Conservation of cofitness between CSW01_04375 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04375 SsrA-binding protein 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.51 14
Escherichia coli ECRC101 0.72 MCAODC_11650 smpB SsrA-binding protein SmpB 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC98 0.72 JDDGAC_24790 smpB SsrA-binding protein SmpB 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01087 SsrA-binding protein 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Escherichia coli ECRC62 0.72 BNILDI_11600 smpB SsrA-binding protein SmpB 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli ECOR38 0.72 HEPCGN_20245 smpB SsrA-binding protein SmpB 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC99 0.72 KEDOAH_07095 smpB SsrA-binding protein SmpB 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECOR27 0.72 NOLOHH_12795 smpB SsrA-binding protein SmpB 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS14795 SsrA-binding protein SmpB 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia fergusonii Becca 0.72 EFB2_01273 SsrA-binding protein 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli ECRC100 0.72 OKFHMN_21125 smpB SsrA-binding protein SmpB 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli BL21 0.72 ECD_02508 tmRNA-binding trans-translation protein 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Escherichia coli BW25113 0.72 b2620 smpB SsrA-binding protein (NCBI) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia coli ECRC102 0.72 NIAGMN_18895 smpB SsrA-binding protein SmpB 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4158 tmRNA-binding protein SmpB 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Enterobacter sp. TBS_079 0.70 MPMX20_03490 SsrA-binding protein 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2723 SsrA-binding protein 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase low > 76
Dickeya dadantii 3937 0.70 DDA3937_RS04305 SsrA-binding protein SmpB 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA — —
Klebsiella pneumoniae MKP103 0.70 KDGMDA_02270 SsrA-binding protein SmpB 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.40 23
Dickeya dianthicola ME23 0.70 DZA65_RS04215 SsrA-binding protein SmpB 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS04300 SsrA-binding protein SmpB 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Klebsiella michiganensis M5al 0.69 BWI76_RS21580 SsrA-binding protein 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.27 45
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS14680 SsrA-binding protein SmpB 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA — —
Pantoea sp. MT58 0.68 IAI47_04790 SsrA-binding protein SmpB 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA — —
Erwinia tracheiphila SCR3 0.68 LU632_RS17025 smpB SsrA-binding protein SmpB 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Rahnella sp. WP5 0.68 EX31_RS21740 SsrA-binding protein SmpB 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA — —
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_26965 smpB SsrA-binding protein SmpB 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS17440 SsrA-binding protein SmpB 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Erwinia amylovora T8 0.67 OLJFJH_10155 SsrA-binding protein SmpB 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA — —
Serratia liquefaciens MT49 0.63 IAI46_19655 SsrA-binding protein SmpB 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 87
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0969 SsrA-binding protein 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Alteromonas macleodii MIT1002 0.59 MIT1002_01806 Small protein B 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Shewanella oneidensis MR-1 0.57 SO1473 smpB SsrA-binding protein (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.57 Shewana3_2952 smpB SsrA-binding protein (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) — —
Shewanella amazonensis SB2B 0.55 Sama_2388 smpB SsrA-binding protein (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Shewanella loihica PV-4 0.55 Shew_1268 smpB SsrA-binding protein (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Marinobacter adhaerens HP15 0.55 HP15_3090 SsrA-binding protein 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.3437.1 tmRNA-binding protein SmpB 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Acinetobacter baumannii LAC-4 0.54 RR41_RS15055 SsrA-binding protein SmpB 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 — —
Acinetobacter radioresistens SK82 0.54 MPMX26_00737 SsrA-binding protein 0.39 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Lysobacter sp. OAE881 0.53 ABIE51_RS11680 SsrA-binding protein SmpB 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Pseudomonas sp. S08-1 0.53 OH686_17025 SsrA-binding protein 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas stutzeri RCH2 0.52 Psest_0957 SsrA-binding protein 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas sp. SVBP6 0.52 COO64_RS15300 smpB SsrA-binding protein SmpB 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein low > 93
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS05700 SsrA-binding protein SmpB 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas sp. BP01 0.52 JOY50_RS26715 smpB SsrA-binding protein SmpB 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein low > 84
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05690 SsrA-binding protein 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_07540 SsrA-binding protein 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas aeruginosa PA14 0.51 IKLFDK_29750 SsrA-binding protein SmpB 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase low > 98
Pseudomonas aeruginosa PUPa3 0.51 DQ20_RS52440 smpB;go_function=RNA SsrA-binding protein SmpB 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein low > 101
Pseudomonas segetis P6 0.51 MPMX49_01175 SsrA-binding protein 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC — —
Pseudomonas aeruginosa MRSN321 0.51 DY961_RS09600 smpB;go_function=RNA SsrA-binding protein SmpB 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein low > 100
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3378 tmRNA-binding protein SmpB 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Dechlorosoma suillum PS 0.51 Dsui_2675 SsrA-binding protein 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas putida KT2440 0.51 PP_4733 SsrA-binding protein 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas sp. RS175 0.50 PFR28_00065 SsrA-binding protein 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_07375 smpB SsrA-binding protein SmpB 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase low > 53
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS11435 SsrA-binding protein SmpB 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS17925 SsrA-binding protein SmpB 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS17780 SsrA-binding protein SmpB 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS17000 SsrA-binding protein SmpB 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum GMI1000 0.49 RS_RS07145 SsrA-binding protein 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_4203 SsrA-binding protein 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_4203 SsrA-binding protein 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS00490 SsrA-binding protein SmpB 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum UW163 0.49 UW163_RS13820 SsrA-binding protein SmpB 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas sp. DMC3 0.48 GFF4965 SsrA-binding protein 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC low > 89
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_1184 tmRNA-binding protein SmpB 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS11940 SsrA-binding protein SmpB 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS11775 single-stranded DNA-binding protein 0.39 RR42_RS01680 cytochrome C550 — —
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_5112 tmRNA-binding protein SmpB 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Methylophilus sp. DMC18 0.48 GFF1142 SsrA-binding protein 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS04010 SsrA-binding protein SmpB 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas orientalis W4I3 0.47 QF045_RS26350 SsrA-binding protein SmpB 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS25935 SsrA-binding protein SmpB 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas simiae WCS417 0.47 PS417_24095 SsrA-binding protein 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04969 SsrA-binding protein 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS25935 SsrA-binding protein SmpB 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase — —
Variovorax sp. OAS795 0.47 ABID97_RS16435 SsrA-binding protein SmpB 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Paraburkholderia graminis OAS925 0.46 ABIE53_002482 SsrA-binding protein 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS12040 single-stranded DNA-binding protein 0.37 BPHYT_RS02415 cytochrome C550 — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_00630 SsrA-binding protein 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2861 tmRNA-binding protein SmpB 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS11000 single-stranded DNA-binding protein 0.35 HSERO_RS21530 cytochrome C550 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4352 tmRNA-binding protein SmpB 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06520 SsrA-binding protein SmpB 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein — —
Dinoroseobacter shibae DFL-12 0.42 Dshi_0147 SsrA-binding protein (RefSeq) 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Rhodospirillum rubrum S1H 0.41 Rru_A1864 SmpB protein (NCBI) 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.40 PGA1_c29450 SsrA-binding protein SmpB 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Sphingobium sp. HT1-2 0.40 GFF3116 tmRNA-binding protein SmpB 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0212 SsrA-binding protein 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Sinorhizobium meliloti 1021 0.39 SMc02405 SsrA-binding protein 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Magnetospirillum magneticum AMB-1 0.38 AMB_RS12810 SsrA-binding protein 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum sp. SherDot2 0.38 MPMX19_01218 SsrA-binding protein 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Azospirillum brasilense Sp245 0.38 AZOBR_RS08425 single-stranded DNA-binding protein 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Agrobacterium fabrum C58 0.37 Atu1025 SSRA-binding protein 0.21 Atu1499 penicillin binding protein — —
Rhodopseudomonas palustris CGA009 0.37 TX73_013930 SsrA-binding protein SmpB 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase — —
Bosea sp. OAE506 0.35 ABIE41_RS19950 SsrA-binding protein SmpB 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Xanthobacter sp. DMC5 0.34 GFF405 SsrA-binding protein 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC — —

Not shown: 23 genomes with orthologs for CSW01_04375 only; 0 genomes with orthologs for CSW01_04845 only