| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00260 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 1.0 | CSW01_04845 | | D-alanyl-D-alanine carboxypeptidase | 0.64 | 8 |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_00522 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.62 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | — | — |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_03050 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.39 | MPMX26_01051 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 36 |
| Pseudomonas fluorescens FW300-N2E2 | 0.37 | Pf6N2E2_4081 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.46 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas sp. S08-1 | 0.37 | OH686_13380 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.45 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas stutzeri RCH2 | 0.37 | Psest_4068 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.46 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas sp. RS175 | 0.37 | PFR28_04495 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.47 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Pseudomonas sp. BP01 | 0.37 | JOY50_RS08825 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.45 | JOY50_RS17720 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_5335 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.45 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas sp. SVBP6 | 0.36 | COO64_RS01745 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.46 | COO64_RS15590 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_11075 | | phosphoribosylaminoimidazole carboxylase | 0.46 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas sp. DMC3 | 0.36 | GFF485 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.46 | GFF3884 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 89 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_5047 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.47 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_5047 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.47 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | — | — |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS29800 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.46 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS29800 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.46 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas simiae WCS417 | 0.36 | PS417_28115 | | phosphoribosylaminoimidazole carboxylase | 0.46 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_747 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.46 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_09935 | | phosphoribosylaminoimidazole carboxylase | 0.46 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_2028 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.46 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas aeruginosa PA14 | 0.34 | IKLFDK_26300 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.45 | IKLFDK_20625 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 101 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_2350 | | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.45 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Lysobacter sp. OAE881 | 0.32 | ABIE51_RS15390 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.40 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_03050 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.42 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.32 | Xcc-8004.2012.1 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.42 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.31 | B158DRAFT_0610 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.50 | B158DRAFT_0079 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS13815 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.41 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS13530 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.41 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS06470 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.58 | HER17_RS15260 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Dyella japonica UNC79MFTsu3.2 | 0.30 | ABZR86_RS09830 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.41 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Shewanella sp. ANA-3 | 0.29 | Shewana3_3156 | | phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) | 0.69 | Shewana3_0991 | | penicillin-binding protein 6 (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF4438 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.55 | GFF4545 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 78 |
| Serratia liquefaciens MT49 | 0.29 | IAI46_05370 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.56 | IAI46_05915 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 86 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS07065 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | BWI76_RS08020 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Dickeya dianthicola 67-19 | 0.29 | HGI48_RS15190 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.57 | HGI48_RS06200 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 71 |
| Rahnella sp. WP5 | 0.29 | EX31_RS22620 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.57 | EX31_RS23105 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 89 |
| Rhodanobacter sp000427505 FW510-R12 | 0.29 | LRK53_RS14785 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.41 | LRK53_RS17780 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Shewanella loihica PV-4 | 0.29 | Shew_1249 | | phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) | 0.68 | Shew_2939 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.29 | Sama_1063 | | phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) | 0.69 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Dickeya dianthicola ME23 | 0.29 | DZA65_RS15995 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.56 | DZA65_RS06545 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS15110 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.57 | DDA3937_RS06155 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS15250 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.56 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 74 |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS06140 | | phosphoribosylaminoimidazole carboxylase | 0.33 | AZOBR_RS08775 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Shewanella oneidensis MR-1 | 0.28 | SO3555 | purK | phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) | 0.69 | SO1164 | dacA-1 | D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | — | — |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS03025 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | ECOLIN_RS03445 | | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_2460 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.55 | EX28DRAFT_2331 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pantoea sp. MT58 | 0.28 | IAI47_14355 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.57 | IAI47_14040 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 76 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01418 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.35 | MPMX19_01465 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Escherichia fergusonii Becca | 0.28 | EFB2_03540 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.54 | EFB2_03460 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 86 |
| Erwinia amylovora T8 | 0.28 | OLJFJH_17635 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | OLJFJH_17245 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 58 |
| Escherichia coli ECOR27 | 0.28 | NOLOHH_00830 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | NOLOHH_23755 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Escherichia coli ECRC101 | 0.27 | MCAODC_27060 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | MCAODC_26595 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 87 |
| Escherichia coli ECRC102 | 0.27 | NIAGMN_05895 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | NIAGMN_05435 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Escherichia coli ECRC100 | 0.27 | OKFHMN_07840 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | OKFHMN_07380 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 80 |
| Escherichia coli ECRC99 | 0.27 | KEDOAH_20130 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | KEDOAH_20590 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Escherichia coli BL21 | 0.27 | ECD_00472 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.55 | ECD_00601 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) | low | > 61 |
| Escherichia coli ECRC98 | 0.27 | JDDGAC_11490 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | JDDGAC_11025 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 86 |
| Escherichia coli BW25113 | 0.27 | b0522 | purK | phosphoribosylaminoimidazole carboxylase (NCBI) | 0.55 | b0632 | dacA | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.27 | HEPCGN_06480 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | HEPCGN_00895 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 87 |
| Escherichia coli ECRC62 | 0.27 | BNILDI_22260 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.55 | BNILDI_21765 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.27 | OHPLBJKB_03159 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.55 | OHPLBJKB_03074 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_1428 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.28 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Sinorhizobium meliloti 1021 | 0.27 | SMc04002 | | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.22 | SMc01188 | | penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein | — | — |
| Enterobacter sp. TBS_079 | 0.27 | MPMX20_01097 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.55 | MPMX20_01291 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 85 |
| Agrobacterium fabrum C58 | 0.26 | Atu3755 | | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.21 | Atu1499 | | penicillin binding protein | low | > 89 |
| Xanthobacter sp. DMC5 | 0.26 | GFF3228 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.26 | GFF689 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Bosea sp. OAE506 | 0.26 | ABIE41_RS09245 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.30 | ABIE41_RS15965 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.26 | Dshi_0680 | | phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) | 0.25 | Dshi_0923 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_021645 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.26 | TX73_014370 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF2770 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.33 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.25 | PGA1_c24870 | | phosphoribosylaminoimidazole carboxylase ATPase subunit PurK | 0.26 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Magnetospirillum magneticum AMB-1 | 0.24 | AMB_RS11140 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.30 | AMB_RS12315 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Methylophilus sp. DMC18 | 0.24 | GFF1769 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.39 | GFF2179 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.24 | H281DRAFT_04185 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | — | — |
| Herbaspirillum seropedicae SmR1 | 0.23 | HSERO_RS03370 | | phosphoribosylaminoimidazole carboxylase | 0.35 | HSERO_RS21530 | | cytochrome C550 | — | — |
| Burkholderia phytofirmans PsJN | 0.23 | BPHYT_RS16245 | | phosphoribosylaminoimidazole carboxylase | 0.37 | BPHYT_RS02415 | | cytochrome C550 | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS00565 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.34 | ABCV34_RS13340 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Rhodospirillum rubrum S1H | 0.23 | Rru_A1051 | | Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) | 0.38 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | — | — |
| Paraburkholderia graminis OAS925 | 0.23 | ABIE53_003423 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | ABIE53_000626 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) | — | — |
| Variovorax sp. OAS795 | 0.23 | ABID97_RS01700 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.32 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Dechlorosoma suillum PS | 0.23 | Dsui_0091 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.37 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.22 | QEN71_RS02450 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | QEN71_RS01300 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.39 | 134 |
| Acidovorax sp. GW101-3H11 | 0.22 | Ac3H11_675 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.32 | Ac3H11_2142 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS02885 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | RS_RS01610 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS03230 | | phosphoribosylaminoimidazole carboxylase | 0.39 | RR42_RS01680 | | cytochrome C550 | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.20 | RALBFv3_RS12200 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.34 | RALBFv3_RS10770 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum UW163 | 0.20 | UW163_RS01410 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.34 | UW163_RS02810 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.20 | ABZR87_RS08090 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | ABZR87_RS06610 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS21130 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | RPSI07_RS22545 | | D-alanyl-D-alanine carboxypeptidase | — | — |
Not shown: 14 genomes with orthologs for CSW01_00260 only; 0 genomes with orthologs for CSW01_04845 only