Conservation of cofitness between CSW01_03705 and CSW01_01825 in Vibrio cholerae E7946 ATCC 55056

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03705 chaperone protein ClpB 1.0 CSW01_01825 DNA mismatch repair protein MutL 0.59 3
Shewanella amazonensis SB2B 0.80 Sama_2603 clpB protein (RefSeq) 0.36 Sama_3027 mutL DNA mismatch repair protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.80 SO3577 clpB clpB protein (NCBI ptt file) 0.37 SO0601 mutL DNA mismatch repair protein MutL (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_3169 ATPase (RefSeq) 0.37 Shewana3_0595 mutL DNA mismatch repair protein (RefSeq) low > 73
Shewanella loihica PV-4 0.80 Shew_2948 ATPase (RefSeq) 0.37 Shew_0564 DNA mismatch repair protein MutL (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF4184 ClpB protein 0.43 GFF823 DNA mismatch repair protein MutL low > 78
Alteromonas macleodii MIT1002 0.78 MIT1002_02677 Heat shock protein F84.1 0.32 MIT1002_03790 DNA mismatch repair protein MutL low > 70
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB 0.44 EX28DRAFT_3367 DNA mismatch repair protein MutL low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03461 Chaperone protein ClpB 0.44 MPMX20_00451 DNA mismatch repair protein MutL low > 85
Dickeya dianthicola ME23 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB 0.44 DZA65_RS19690 DNA mismatch repair endonuclease MutL low > 75
Escherichia coli BW25113 0.78 b2592 clpB protein disaggregation chaperone (NCBI) 0.44 b4170 mutL DNA mismatch repair protein (NCBI) low > 76
Escherichia coli ECOR27 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB 0.43 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL low > 76
Escherichia coli ECRC100 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB 0.43 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL low > 79
Escherichia coli ECRC62 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB 0.43 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL low > 75
Klebsiella michiganensis M5al 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB 0.44 BWI76_RS02525 DNA mismatch repair protein MutL low > 92
Escherichia coli ECRC101 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB 0.43 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL low > 88
Escherichia coli ECRC98 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB 0.43 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01114 Chaperone protein ClpB 0.43 OHPLBJKB_03872 DNA mismatch repair protein MutL low > 74
Escherichia coli ECRC102 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB 0.43 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL low > 80
Escherichia coli ECOR38 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB 0.43 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL low > 88
Escherichia coli BL21 0.78 ECD_02482 protein disaggregation chaperone 0.44 ECD_04037 methyl-directed mismatch repair protein low > 61
Escherichia fergusonii Becca 0.78 EFB2_01298 Chaperone protein ClpB 0.44 EFB2_04365 DNA mismatch repair protein MutL low > 86
Escherichia coli ECRC99 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB 0.43 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL — —
Klebsiella pneumoniae MKP103 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB 0.43 KDGMDA_11025 DNA mismatch repair endonuclease MutL low > 95
Dickeya dianthicola 67-19 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB 0.44 HGI48_RS18555 DNA mismatch repair endonuclease MutL low > 71
Escherichia coli Nissle 1917 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB 0.43 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL — —
Pectobacterium carotovorum WPP14 0.77 HER17_RS05410 ATP-dependent chaperone ClpB 0.44 HER17_RS02575 DNA mismatch repair endonuclease MutL low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB 0.45 DDA3937_RS18620 DNA mismatch repair endonuclease MutL 0.38 13
Serratia liquefaciens MT49 0.77 IAI46_03995 ATP-dependent chaperone ClpB 0.45 IAI46_01615 DNA mismatch repair endonuclease MutL low > 86
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB 0.46 PagCFBP13505_RS11175 DNA mismatch repair endonuclease MutL low > 74
Pantoea sp. MT58 0.77 IAI47_04435 ATP-dependent chaperone ClpB 0.46 IAI47_02580 DNA mismatch repair endonuclease MutL low > 76
Rahnella sp. WP5 0.76 EX31_RS07560 ATP-dependent chaperone ClpB 0.44 EX31_RS08830 DNA mismatch repair endonuclease MutL low > 89
Erwinia amylovora T8 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB 0.45 OLJFJH_02510 DNA mismatch repair endonuclease MutL low > 58
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB 0.46 IJEDHG_06875 mutL DNA mismatch repair endonuclease MutL low > 61
Erwinia tracheiphila SCR3 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB 0.46 LU632_RS02045 mutL DNA mismatch repair endonuclease MutL low > 74
Marinobacter adhaerens HP15 0.74 HP15_529 protein disaggregation chaperone 0.35 HP15_2501 DNA mismatch repair protein mutL 0.59 36
Lysobacter sp. OAE881 0.72 ABIE51_RS04925 ATP-dependent chaperone ClpB 0.28 ABIE51_RS08065 DNA mismatch repair endonuclease MutL low > 62
Pseudomonas sp. RS175 0.71 PFR28_03746 Chaperone protein ClpB 0.34 PFR28_05119 DNA mismatch repair protein MutL low > 88
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5129 ClpB protein 0.35 Pf6N2E2_3616 DNA mismatch repair protein MutL low > 103
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15935 ATP-dependent chaperone ClpB 0.33 AO356_08665 DNA mismatch repair protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2824 ClpB protein 0.34 Pf1N1B4_1414 DNA mismatch repair protein MutL low > 87
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_00971 Chaperone protein ClpB 0.35 GEMAOFIL_00734 DNA mismatch repair protein MutL low > 93
Pseudomonas sp. S08-1 0.71 OH686_16420 ATP-dependent chaperone protein ClpB 0.35 OH686_09480 DNA mismatch repair protein MutL low > 80
Pseudomonas simiae WCS417 0.71 PS417_03830 protein disaggregation chaperone 0.35 PS417_02480 DNA mismatch repair protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.35 PFLU_RS02560 DNA mismatch repair endonuclease MutL low > 109
Pseudomonas fluorescens SBW25 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.35 PFLU_RS02560 DNA mismatch repair endonuclease MutL low > 109
Pseudomonas aeruginosa PA14 0.71 IKLFDK_00820 Chaperone protein ClpB 0.32 IKLFDK_28810 DNA mismatch repair endonuclease MutL low > 100
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1495 ClpB protein 0.34 PfGW456L13_156 DNA mismatch repair protein MutL low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.34 Psyr_0570 DNA mismatch repair protein MutL low > 86
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14230 ATP-dependent chaperone ClpB 0.34 AO353_13135 DNA mismatch repair protein low > 101
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.34 Psyr_0570 DNA mismatch repair protein MutL low > 86
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.1382.1 ClpB protein 0.28 Xcc-8004.2256.1 DNA mismatch repair protein MutL low > 74
Pseudomonas sp. BP01 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB 0.34 JOY50_RS17220 mutL DNA mismatch repair endonuclease MutL low > 84
Pseudomonas sp. DMC3 0.70 GFF4006 Chaperone protein ClpB 0.32 GFF3218 DNA mismatch repair protein MutL low > 89
Pseudomonas putida KT2440 0.70 PP_0625 Chaperone protein ClpB 0.34 PP_4896 DNA mismatch repair protein MutL low > 96
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB 0.29 ABZR86_RS00855 DNA mismatch repair endonuclease MutL low > 74
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB 0.28 LRK53_RS13465 DNA mismatch repair endonuclease MutL low > 59
Rhodanobacter denitrificans MT42 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB 0.30 LRK55_RS14865 DNA mismatch repair endonuclease MutL low > 63
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.29 OKGIIK_03920 mutL DNA mismatch repair endonuclease MutL low > 53
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB 0.30 LRK54_RS15150 DNA mismatch repair endonuclease MutL low > 59
Methylophilus sp. DMC18 0.68 GFF1788 Chaperone protein ClpB 0.29 GFF1253 DNA mismatch repair protein MutL low > 43
Dechlorosoma suillum PS 0.67 Dsui_2161 ATP-dependent chaperone ClpB 0.27 Dsui_1551 DNA mismatch repair protein MutL low > 51
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB 0.25 H281DRAFT_04712 DNA mismatch repair protein MutL low > 103
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB 0.25 QEN71_RS26435 DNA mismatch repair endonuclease MutL low > 153
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS08990 protein disaggregation chaperone 0.23 BPHYT_RS03650 DNA mismatch repair protein low > 109
Ralstonia solanacearum PSI07 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB 0.26 RPSI07_RS12070 DNA mismatch repair endonuclease MutL low > 81
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB 0.26 ABZR87_RS00870 DNA mismatch repair endonuclease MutL low > 80
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB 0.27 RALBFv3_RS05230 DNA mismatch repair endonuclease MutL low > 76
Ralstonia solanacearum UW163 0.65 UW163_RS13360 ATP-dependent chaperone ClpB 0.27 UW163_RS08395 DNA mismatch repair endonuclease MutL — —
Ralstonia solanacearum GMI1000 0.65 RS_RS06695 chaperone protein ClpB 0.27 RS_RS12850 DNA mismatch repair protein MutL low > 80
Acidovorax sp. GW101-3H11 0.65 Ac3H11_1474 ClpB protein 0.23 Ac3H11_313 DNA mismatch repair protein MutL low > 79
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10545 protein disaggregation chaperone 0.26 HSERO_RS04190 DNA mismatch repair protein low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF3942 ClpB protein 0.23 GFF5485 DNA mismatch repair protein MutL low > 90
Acinetobacter radioresistens SK82 0.64 MPMX26_01096 Chaperone protein ClpB 0.25 MPMX26_01207 DNA mismatch repair protein MutL low > 36
Acinetobacter baumannii LAC-4 0.63 RR41_RS10060 ATP-dependent chaperone ClpB 0.26 RR41_RS07070 DNA mismatch repair endonuclease MutL low > 55
Variovorax sp. SCN45 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) 0.24 GFF4800 DNA mismatch repair protein MutL low > 127
Variovorax sp. OAS795 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB 0.24 ABID97_RS20310 DNA mismatch repair endonuclease MutL low > 91
Castellaniella sp019104865 MT123 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB 0.22 ABCV34_RS08785 DNA mismatch repair endonuclease MutL low > 48
Rhizobium sp. OAE497 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB 0.20 ABIE40_RS05235 DNA mismatch repair endonuclease MutL low > 107
Agrobacterium fabrum C58 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit 0.19 Atu0699 DNA mismatch repair protein MutL low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS11010 ATP-dependent chaperone ClpB 0.21 A4249_RS04225 DNA mismatch repair endonuclease MutL low > 48
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_00922 ClpB protein 0.20 CCNA_00731 DNA mismatch repair protein mutL low > 67
Caulobacter crescentus NA1000 0.56 CCNA_00922 ClpB protein 0.20 CCNA_00731 DNA mismatch repair protein mutL low > 66
Rhodospirillum rubrum S1H 0.56 Rru_A0753 Chaperone clpB (NCBI) 0.21 Rru_A2946 DNA mismatch repair protein (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.56 TX73_023005 ATP-dependent chaperone ClpB 0.21 TX73_022655 DNA mismatch repair endonuclease MutL low > 86
Sinorhizobium meliloti 1021 0.55 SMc02433 ATP-dependent protease 0.19 SMc00932 DNA mismatch repair protein low > 103
Dinoroseobacter shibae DFL-12 0.55 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) 0.20 Dshi_0363 DNA mismatch repair protein MutL (RefSeq) 0.33 20
Phaeobacter inhibens DSM 17395 0.55 PGA1_c32440 chaperone protein ClpB 0.20 PGA1_c32740 DNA mismatch repair protein MutL low > 62
Xanthobacter sp. DMC5 0.54 GFF3670 Chaperone protein ClpB 0.21 GFF67 DNA mismatch repair protein MutL — —
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS11960 ATP-dependent chaperone ClpB 0.18 HMPREF1181_RS07405 DNA mismatch repair endonuclease MutL — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS10630 ATP-dependent chaperone ClpB 0.20 ABZR88_RS00380 DNA mismatch repair endonuclease MutL — —
Bacteroides ovatus ATCC 8483 0.53 BACOVA_05393 ATP-dependent chaperone protein ClpB 0.18 BACOVA_00344 DNA mismatch repair domain protein — —
Bacteroides thetaiotaomicron VPI-5482 0.52 BT4597 endopeptidase Clp ATP-binding chain B (NCBI ptt file) 0.18 BT3851 DNA mismatch repair protein mutL (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.52 HMPREF1078_RS00500 ATP-dependent chaperone ClpB 0.18 HMPREF1078_RS17005 DNA mismatch repair endonuclease MutL low > 61
Cellulophaga baltica 18 0.52 M666_RS14965 ATP-dependent chaperone ClpB 0.19 M666_RS11075 DNA mismatch repair endonuclease MutL 0.65 9
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_14135 ATP-dependent chaperone ClpB 0.20 CA264_13305 DNA mismatch repair protein MutL — —
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS12775 ATP-dependent chaperone ClpB 0.20 CA265_RS17200 DNA mismatch repair protein MutL low > 88
Fusobacterium nucleatum SB010 0.51 HUW76_09935 ATP-dependent chaperone ClpB 0.18 HUW76_07720 DNA mismatch repair endonuclease MutL low > 35
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS18885 ATP-dependent chaperone ClpB 0.18 ABI39_RS02285 DNA mismatch repair endonuclease MutL low > 72
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS04980 ATP-dependent chaperone ClpB 0.18 HMPREF1058_RS02970 DNA mismatch repair endonuclease MutL low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_0754 ATP-dependent chaperone ClpB 0.19 Echvi_0780 DNA mismatch repair protein MutL — —

Not shown: 18 genomes with orthologs for CSW01_03705 only; 0 genomes with orthologs for CSW01_01825 only