Conservation of cofitness between CSW01_04845 and CSW01_00260 in Vibrio cholerae E7946 ATCC 55056

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 1.0 CSW01_00260 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 14
Shewanella sp. ANA-3 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.29 Shewana3_3156 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.28 SO3555 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file)
Shewanella amazonensis SB2B 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.29 Sama_1063 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq)
Shewanella loihica PV-4 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.29 Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.46 MIT1002_00522 N5-carboxyaminoimidazole ribonucleotide synthase
Pectobacterium carotovorum WPP14 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.30 HER17_RS06470 5-(carboxyamino)imidazole ribonucleotide synthase 0.56 39
Pantoea sp. MT58 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.28 IAI47_14355 5-(carboxyamino)imidazole ribonucleotide synthase low > 76
Rahnella sp. WP5 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.29 EX31_RS22620 5-(carboxyamino)imidazole ribonucleotide synthase low > 89
Dickeya dianthicola 67-19 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA 0.29 HGI48_RS15190 5-(carboxyamino)imidazole ribonucleotide synthase low > 71
Dickeya dadantii 3937 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.28 DDA3937_RS15110 5-(carboxyamino)imidazole ribonucleotide synthase low > 74
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA 0.27 PagCFBP13505_RS10855 5-(carboxyamino)imidazole ribonucleotide synthase
Dickeya dianthicola ME23 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA 0.29 DZA65_RS15995 5-(carboxyamino)imidazole ribonucleotide synthase 0.38 31
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC 0.29 IJEDHG_01025 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Erwinia tracheiphila SCR3 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.28 LU632_RS15250 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 73
Serratia liquefaciens MT49 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.29 IAI46_05370 5-(carboxyamino)imidazole ribonucleotide synthase low > 87
Klebsiella pneumoniae MKP103 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.29 KDGMDA_15000 5-(carboxyamino)imidazole ribonucleotide synthase low > 95
Erwinia amylovora T8 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA 0.28 OLJFJH_17635 5-(carboxyamino)imidazole ribonucleotide synthase low > 58
Escherichia coli BW25113 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) 0.27 b0522 purK phosphoribosylaminoimidazole carboxylase (NCBI) low > 76
Escherichia coli ECRC100 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 OKFHMN_07840 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 79
Escherichia coli BL21 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.27 ECD_00472 N5-carboxyaminoimidazole ribonucleotide synthase low > 61
Escherichia coli ECOR38 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 HEPCGN_06480 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 88
Klebsiella michiganensis M5al 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.29 BWI76_RS07065 5-(carboxyamino)imidazole ribonucleotide synthase low > 92
Escherichia coli ECRC98 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 JDDGAC_11490 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 87
Escherichia coli ECRC99 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 KEDOAH_20130 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC102 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 NIAGMN_05895 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 80
Enterobacter sp. TBS_079 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.27 MPMX20_01097 N5-carboxyaminoimidazole ribonucleotide synthase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.27 OHPLBJKB_03159 N5-carboxyaminoimidazole ribonucleotide synthase low > 74
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA 0.28 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC101 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 MCAODC_27060 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 87
Escherichia coli ECRC62 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 BNILDI_22260 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 75
Escherichia coli ECOR27 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.28 NOLOHH_00830 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.29 GFF4438 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 78
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.28 EX28DRAFT_2460 phosphoribosylaminoimidazole carboxylase, PurK protein
Escherichia fergusonii Becca 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA 0.28 EFB2_03540 N5-carboxyaminoimidazole ribonucleotide synthase low > 86
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.31 B158DRAFT_0610 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas sp. RS175 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.37 PFR28_04495 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.35 Pf1N1B4_2028 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.36 AO356_11075 phosphoribosylaminoimidazole carboxylase
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.37 Pf6N2E2_4081 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Pseudomonas segetis P6 0.46 ACVTMO_RS05235 D-alanyl-D-alanine carboxypeptidase family protein 0.36 ACVTMO_RS00755 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.35 AO353_09935 phosphoribosylaminoimidazole carboxylase
Pseudomonas sp. SVBP6 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein 0.36 COO64_RS01745 5-(carboxyamino)imidazole ribonucleotide synthase low > 93
Pseudomonas sp. DMC3 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC 0.36 GFF485 N5-carboxyaminoimidazole ribonucleotide synthase low > 89
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.36 PfGW456L13_747 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Pseudomonas stutzeri RCH2 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.37 Psest_4068 phosphoribosylaminoimidazole carboxylase, PurK protein
Pseudomonas simiae WCS417 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.36 PS417_28115 phosphoribosylaminoimidazole carboxylase
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas fluorescens SBW25 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas orientalis W4I3 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein 0.36 QF045_RS02475 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC 0.36 GEMAOFIL_00089 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas sp. BP01 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein 0.37 JOY50_RS08825 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas putida KT2440 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.36 PP_5335 N5-carboxyaminoimidazole ribonucleotide synthase
Pseudomonas sp. S08-1 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.37 OH686_13380 N5-carboxyaminoimidazole ribonucleotide synthase
Marinobacter adhaerens HP15 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.33 HP15_2350 phosphoribosylaminoimidazole carboxylase ATPase subunit
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein 0.34 DQ20_RS57855 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas aeruginosa PA14 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase 0.34 IKLFDK_26300 5-(carboxyamino)imidazole ribonucleotide synthase low > 98
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein 0.34 DY961_RS25395 5-(carboxyamino)imidazole ribonucleotide synthase low > 100
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.32 Xcc-8004.2012.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 74
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.32 OKGIIK_03050 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase 0.29 LRK53_RS14785 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.30 LRK54_RS13815 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.30 LRK55_RS13530 5-(carboxyamino)imidazole ribonucleotide synthase
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.30 ABZR86_RS09830 5-(carboxyamino)imidazole ribonucleotide synthase
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.32 ABIE51_RS15390 5-(carboxyamino)imidazole ribonucleotide synthase low > 62
Acinetobacter baumannii LAC-4 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 0.39 RR41_RS18910 5-(carboxyamino)imidazole ribonucleotide synthase low > 55
Acinetobacter radioresistens SK82 0.39 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.39 MPMX26_03050 N5-carboxyaminoimidazole ribonucleotide synthase low > 36
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS01680 cytochrome C550 0.20 RR42_RS03230 phosphoribosylaminoimidazole carboxylase
Methylophilus sp. DMC18 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC 0.24 GFF1769 N5-carboxyaminoimidazole ribonucleotide synthase
Rhodospirillum rubrum S1H 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.23 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI)
Dechlorosoma suillum PS 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.23 Dsui_0091 phosphoribosylaminoimidazole carboxylase, PurK protein
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02415 cytochrome C550 0.23 BPHYT_RS16245 phosphoribosylaminoimidazole carboxylase low > 109
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.20 RPSI07_RS21130 5-(carboxyamino)imidazole ribonucleotide synthase
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.24 H281DRAFT_04185 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.20 ABZR87_RS08090 5-(carboxyamino)imidazole ribonucleotide synthase
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.22 QEN71_RS02450 5-(carboxyamino)imidazole ribonucleotide synthase low > 153
Paraburkholderia graminis OAS925 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.23 ABIE53_003423 5-(carboxyamino)imidazole ribonucleotide synthase
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21530 cytochrome C550 0.23 HSERO_RS03370 phosphoribosylaminoimidazole carboxylase
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.20 RS_RS02885 5-(carboxyamino)imidazole ribonucleotide synthase
Azospirillum sp. SherDot2 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.28 MPMX19_01418 N5-carboxyaminoimidazole ribonucleotide synthase
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.23 ABCV34_RS00565 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.20 UW163_RS01410 5-(carboxyamino)imidazole ribonucleotide synthase
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.20 RALBFv3_RS12200 5-(carboxyamino)imidazole ribonucleotide synthase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.25 GFF2770 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Azospirillum brasilense Sp245 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.28 AZOBR_RS06140 phosphoribosylaminoimidazole carboxylase
Acidovorax sp. GW101-3H11 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.22 Ac3H11_675 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.23 ABID97_RS01700 5-(carboxyamino)imidazole ribonucleotide synthase
Bosea sp. OAE506 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.26 ABIE41_RS09245 5-(carboxyamino)imidazole ribonucleotide synthase
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.24 AMB_RS11140 5-(carboxyamino)imidazole ribonucleotide synthase
Sphingobium sp. HT1-2 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.28 GFF1298 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18)
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.27 Ga0059261_1428 5-(carboxyamino)imidazole ribonucleotide synthase
Phaeobacter inhibens DSM 17395 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.25 PGA1_c24870 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
Xanthobacter sp. DMC5 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC 0.26 GFF3228 N5-carboxyaminoimidazole ribonucleotide synthase
Rhodopseudomonas palustris CGA009 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.26 TX73_021645 5-(carboxyamino)imidazole ribonucleotide synthase
Dinoroseobacter shibae DFL-12 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.26 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq)
Sinorhizobium meliloti 1021 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.27 SMc04002 phosphoribosylaminoimidazole carboxylase ATPase subunit
Agrobacterium fabrum C58 0.21 Atu1499 penicillin binding protein 0.26 Atu3755 phosphoribosylaminoimidazole carboxylase ATPase subunit low > 89

Not shown: 0 genomes with orthologs for CSW01_04845 only; 14 genomes with orthologs for CSW01_00260 only