| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS00865 | | DNA-binding transcriptional regulator OxyR | 1.0 | BWI76_RS00140 | | phosphate transport system regulator PhoU | 0.35 | 4 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.98 | GFF2347 | | Hydrogen peroxide-inducible genes activator | 0.98 | GFF1738 | | Phosphate transport system regulatory protein PhoU | — | — |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_04519 | | Hydrogen peroxide-inducible genes activator | 0.99 | MPMX20_04643 | | Phosphate-specific transport system accessory protein PhoU | — | — |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_4424 | | Transcriptional regulator | 0.99 | EX28DRAFT_4000 | | phosphate transport system regulatory protein PhoU | — | — |
| Escherichia coli ECRC99 | 0.96 | KEDOAH_14595 | oxyR | DNA-binding transcriptional regulator OxyR | 0.96 | KEDOAH_13250 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia fergusonii Becca | 0.96 | EFB2_04651 | | Hydrogen peroxide-inducible genes activator | 0.94 | EFB2_04909 | | Phosphate-specific transport system accessory protein PhoU | — | — |
| Escherichia coli ECRC102 | 0.96 | NIAGMN_11315 | oxyR | DNA-binding transcriptional regulator OxyR | 0.96 | NIAGMN_12655 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC100 | 0.96 | OKFHMN_13565 | oxyR | DNA-binding transcriptional regulator OxyR | 0.96 | OKFHMN_14900 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli Nissle 1917 | 0.96 | ECOLIN_RS22870 | | DNA-binding transcriptional regulator OxyR | 0.94 | ECOLIN_RS21430 | | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC101 | 0.96 | MCAODC_04065 | oxyR | DNA-binding transcriptional regulator OxyR | 0.96 | MCAODC_05405 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECOR38 | 0.96 | HEPCGN_12210 | oxyR | DNA-binding transcriptional regulator OxyR | 0.96 | HEPCGN_13610 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC62 | 0.96 | BNILDI_05825 | oxyR | DNA-binding transcriptional regulator OxyR | 0.95 | BNILDI_04495 | pstA | phosphate ABC transporter permease PstA | — | — |
| Escherichia coli ECRC98 | 0.96 | JDDGAC_17190 | oxyR | DNA-binding transcriptional regulator OxyR | 0.96 | JDDGAC_18520 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli BL21 | 0.96 | ECD_03846 | | oxidative and nitrosative stress transcriptional regulator | 0.95 | ECD_03608 | | negative regulator of PhoR/PhoB two-component regulator | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.96 | OHPLBJKB_04089 | | Hydrogen peroxide-inducible genes activator | 0.95 | OHPLBJKB_04329 | | Phosphate-specific transport system accessory protein PhoU | — | — |
| Escherichia coli BW25113 | 0.96 | b3961 | oxyR | DNA-binding transcriptional dual regulator (NCBI) | 0.95 | b3724 | phoU | negative regulator of PhoR/PhoB two-component regulator (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.96 | NOLOHH_05700 | oxyR | DNA-binding transcriptional regulator OxyR | 0.95 | NOLOHH_07030 | pstA | phosphate ABC transporter permease PstA | — | — |
| Pectobacterium carotovorum WPP14 | 0.90 | HER17_RS00955 | | DNA-binding transcriptional regulator OxyR | 0.92 | HER17_RS21695 | | phosphate signaling complex protein PhoU | — | — |
| Dickeya dianthicola 67-19 | 0.89 | HGI48_RS20405 | | DNA-binding transcriptional regulator OxyR | 0.90 | HGI48_RS21580 | | phosphate signaling complex protein PhoU | — | — |
| Dickeya dianthicola ME23 | 0.89 | DZA65_RS21450 | | DNA-binding transcriptional regulator OxyR | 0.90 | DZA65_RS22560 | | phosphate signaling complex protein PhoU | — | — |
| Dickeya dadantii 3937 | 0.89 | DDA3937_RS00970 | | DNA-binding transcriptional regulator OxyR | 0.90 | DDA3937_RS21450 | | phosphate signaling complex protein PhoU | — | — |
| Pantoea sp. MT58 | 0.88 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | 0.88 | IAI47_00215 | | phosphate signaling complex protein PhoU | — | — |
| Serratia liquefaciens MT49 | 0.88 | IAI46_24475 | | DNA-binding transcriptional regulator OxyR | 0.93 | IAI46_25195 | | phosphate signaling complex protein PhoU | low | > 86 |
| Rahnella sp. WP5 | 0.88 | EX31_RS14170 | | DNA-binding transcriptional regulator OxyR | 0.92 | EX31_RS06050 | | phosphate signaling complex protein PhoU | — | — |
| Erwinia tracheiphila SCR3 | 0.87 | LU632_RS19590 | oxyR | DNA-binding transcriptional regulator OxyR | 0.87 | LU632_RS24900 | phoU | phosphate signaling complex protein PhoU | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.63 | CSW01_13340 | | DNA-binding transcriptional regulator OxyR | 0.61 | CSW01_03800 | | phosphate transport system regulator PhoU | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.42 | LRK54_RS04765 | | LysR substrate-binding domain-containing protein | 0.26 | LRK54_RS00475 | | phosphate signaling complex protein PhoU | — | — |
| Rhodanobacter denitrificans MT42 | 0.42 | LRK55_RS04545 | | LysR substrate-binding domain-containing protein | 0.26 | LRK55_RS00215 | | phosphate signaling complex protein PhoU | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_01995 | lysR | DNA-binding transcriptional regulator OxyR | 0.27 | OKGIIK_06835 | phoU | phosphate signaling complex protein PhoU | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.4224.1 | | Hydrogen peroxide-inducible genes activator | 0.27 | Xcc-8004.3364.1 | | Phosphate transport system regulatory protein PhoU | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS19355 | | DNA-binding transcriptional regulator OxyR | 0.26 | ABZR86_RS08250 | | phosphate signaling complex protein PhoU | low | > 74 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS05475 | | LysR substrate-binding domain-containing protein | 0.26 | ABIE51_RS07525 | | phosphate signaling complex protein PhoU | low | > 62 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A0334 | | Transcriptional Regulator, LysR family (NCBI) | 0.33 | Rru_A0602 | | Phosphate uptake regulator, PhoU (NCBI) | low | > 58 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_0202 | | transcriptional regulator, LysR family | 0.43 | Psyr_5037 | | phosphate uptake regulator, PhoU | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_0202 | | transcriptional regulator, LysR family | 0.43 | Psyr_5037 | | phosphate uptake regulator, PhoU | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_4191 | | Transcriptional regulator | 0.45 | Psest_0223 | | phosphate transport system regulatory protein PhoU | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_5309 | | oxidative and nitrosative stress transcriptional dual regulator | 0.45 | PP_5325 | | phosphate transport-associated protein | — | — |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS03575 | | LysR substrate-binding domain-containing protein | 0.36 | ABCV34_RS02395 | | phosphate signaling complex protein PhoU | — | — |
| Herbaspirillum seropedicae SmR1 | 0.36 | HSERO_RS18935 | | LysR family transcriptional regulator | 0.40 | HSERO_RS06330 | | transcriptional regulator | low | > 78 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_4353 | | Hydrogen peroxide-inducible genes activator | 0.45 | Pf6N2E2_4071 | | Phosphate transport system regulatory protein PhoU | low | > 103 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS31340 | | LysR family transcriptional regulator | 0.29 | AZOBR_RS08185 | | PhoU family transcriptional regulator | low | > 97 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_04930 | | Hydrogen peroxide-inducible genes activator | 0.29 | MPMX19_01281 | | Phosphate-specific transport system accessory protein PhoU | low | > 112 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_13510 | | Hydrogen peroxide-inducible genes activator | 0.44 | OH686_13430 | | phosphate transport system regulatory protein PhoU | low | > 80 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_27865 | | LysR family transcriptional regulator | 0.44 | PS417_28065 | | transcriptional regulator PhoU | — | — |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS01255 | | LysR substrate-binding domain-containing protein | 0.41 | ABZR87_RS14080 | | phosphate signaling complex protein PhoU | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_04673 | | transcriptional regulator, LysR family | 0.40 | H281DRAFT_04415 | | phosphate uptake regulator, PhoU | low | > 103 |
| Kangiella aquimarina DSM 16071 | 0.35 | B158DRAFT_0567 | | Transcriptional regulator | 0.49 | B158DRAFT_0894 | | phosphate uptake regulator, PhoU | low | > 40 |
| Dechlorosoma suillum PS | 0.34 | Dsui_0823 | | transcriptional regulator | 0.43 | Dsui_1573 | | phosphate transport system regulatory protein PhoU | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS17385 | | LysR family transcriptional regulator | 0.41 | RR42_RS13450 | | PhoU family transcriptional regulator | low | > 128 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS05605 | | hydrogen peroxide-inducible genes activator | 0.41 | RALBFv3_RS02130 | | phosphate transport system regulatory protein PhoU | 0.56 | 37 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS08020 | | hydrogen peroxide-inducible genes activator | 0.41 | UW163_RS15440 | | phosphate transport system regulatory protein PhoU | — | — |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | 0.44 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | 0.44 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_12385 | | LysR family transcriptional regulator | 0.45 | AO356_11025 | | transcriptional regulator PhoU | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.34 | PfGW456L13_773 | | Hydrogen peroxide-inducible genes activator | 0.44 | PfGW456L13_757 | | Phosphate transport system regulatory protein PhoU | low | > 87 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS13470 | | hydrogen peroxide-inducible genes activator | 0.41 | RS_RS07690 | | phosphate transport system regulatory protein PhoU | 0.89 | 3 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS11690 | | hydrogen peroxide-inducible genes activator | 0.41 | RPSI07_RS15315 | | phosphate transport system regulatory protein PhoU | 0.57 | 8 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS03470 | | LysR family transcriptional regulator | 0.40 | BPHYT_RS14125 | | transcriptional regulator | low | > 109 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_04434 | | Hydrogen peroxide-inducible genes activator | 0.45 | PFR28_04485 | | Phosphate-specific transport system accessory protein PhoU | 0.27 | 82 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS26625 | | LysR substrate-binding domain-containing protein | 0.41 | QEN71_RS04840 | | phosphate signaling complex protein PhoU | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_000834 | | LysR family hydrogen peroxide-inducible transcriptional activator | 0.40 | ABIE53_002991 | | phosphate transport system protein | low | > 113 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002235 | | LysR substrate-binding domain-containing protein | 0.30 | TX73_024825 | | phosphate signaling complex protein PhoU | — | — |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00818 | | hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) | 0.31 | SMc02141 | | phosphate transporter PhoU | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_2106 | | Hydrogen peroxide-inducible genes activator | 0.45 | Pf1N1B4_2038 | | Phosphate transport system regulatory protein PhoU | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.34 | AO353_09315 | | LysR family transcriptional regulator | 0.44 | AO353_09885 | | transcriptional regulator PhoU | low | > 101 |
| Agrobacterium fabrum C58 | 0.33 | Atu4641 | | LysR family transcriptional regulator | 0.29 | Atu0424 | | phosphate transport system regulatory protein | — | — |
| Marinobacter adhaerens HP15 | 0.33 | HP15_308 | | oxidative stress regulatory protein OxyR | 0.43 | HP15_3385 | | phosphate uptake regulator, PhoU | — | — |
| Phocaeicola dorei CL03T12C01 | 0.32 | ABI39_RS06075 | | hydrogen peroxide-inducible genes activator | 0.17 | ABI39_RS20360 | | phosphate signaling complex protein PhoU | low | > 72 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.32 | BT4716 | | redox-sensitive transcriptional activator (NCBI ptt file) | 0.17 | BT1320 | | putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_784 | | Hydrogen peroxide-inducible genes activator | 0.39 | Ac3H11_460 | | Phosphate transport system regulatory protein PhoU | low | > 79 |
| Bacteroides ovatus ATCC 8483 | 0.31 | BACOVA_05567 | | LysR substrate binding domain protein | 0.17 | BACOVA_00605 | | phosphate transport system regulatory protein PhoU | low | > 94 |
| Caulobacter crescentus NA1000 Δfur | 0.31 | CCNA_03811 | | LysR-family transcriptional regulator | 0.31 | CCNA_00295 | | phosphate transport system protein phoU | — | — |
| Caulobacter crescentus NA1000 | 0.31 | CCNA_03811 | | LysR-family transcriptional regulator | 0.31 | CCNA_00295 | | phosphate transport system protein phoU | — | — |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_78p00040 | | hydrogen peroxide-inducible genes activator OxyR | 0.31 | PGA1_c15740 | | phosphate transport system protein PhoU | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_0159 | | Transcriptional regulator | 0.31 | Ga0059261_3652 | | phosphate transport system regulatory protein PhoU | low | > 68 |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS03045 | | hydrogen peroxide-inducible genes activator | 0.29 | AMB_RS06940 | | phosphate transport system regulatory protein PhoU | low | > 64 |
| Bacteroides stercoris CC31F | 0.30 | HMPREF1181_RS02160 | | hydrogen peroxide-inducible genes activator | 0.18 | HMPREF1181_RS10820 | | phosphate signaling complex protein PhoU | low | > 56 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF2803 | | Hydrogen peroxide-inducible genes activator | 0.37 | GFF4234 | | Phosphate transport system regulatory protein PhoU | low | > 90 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS29270 | | LysR substrate-binding domain-containing protein | 0.30 | ABIE40_RS02305 | | phosphate signaling complex protein PhoU | low | > 107 |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS01195 | | hydrogen peroxide-inducible genes activator | 0.33 | ABIE41_RS08905 | | phosphate signaling complex protein PhoU | 0.32 | 3 |
| Parabacteroides merdae CL09T00C40 | 0.29 | HMPREF1078_RS01140 | | hydrogen peroxide-inducible genes activator | 0.21 | HMPREF1078_RS17190 | | phosphate signaling complex protein PhoU | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.29 | CA264_13765 | | DNA-binding transcriptional regulator OxyR | 0.21 | CA264_18725 | | phosphate transport system regulatory protein PhoU | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0727 | | transcriptional regulator, LysR family (RefSeq) | 0.32 | Dshi_1537 | | phosphate uptake regulator, PhoU (RefSeq) | low | > 64 |
| Acinetobacter radioresistens SK82 | 0.28 | MPMX26_02334 | | Hydrogen peroxide-inducible genes activator | 0.39 | MPMX26_00183 | | Phosphate-specific transport system accessory protein PhoU | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.27 | MIT1002_01120 | | Morphology and auto-aggregation control protein | 0.40 | MIT1002_00877 | | Repressor protein PhoU | low | > 70 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.26 | A4249_RS12755 | | hydrogen peroxide-inducible genes activator | 0.34 | A4249_RS08975 | | phosphate signaling complex protein PhoU | — | — |
| Shewanella oneidensis MR-1 | 0.26 | SO1328 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.63 | SO1726 | phoU | phosphate transport system regulatory protein PhoU (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_3046 | | LysR family transcriptional regulator (RefSeq) | 0.64 | Shewana3_2731 | | transcriptional regulator PhoU (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.25 | Shew_1035 | | LysR family transcriptional regulator (RefSeq) | 0.64 | Shew_1701 | | transcriptional regulator PhoU (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.24 | Sama_0860 | | LysR family transcriptional regulator (RefSeq) | 0.65 | Sama_1411 | | transcriptional regulator PhoU (RefSeq) | — | — |
Not shown: 3 genomes with orthologs for BWI76_RS00865 only; 10 genomes with orthologs for BWI76_RS00140 only