| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS16835 | | glyceraldehyde-3-phosphate dehydrogenase | 1.0 | BPHYT_RS17885 | | 3-dehydroquinate synthase | 0.80 | 16 |
| Paraburkholderia graminis OAS925 | 0.99 | ABIE53_003536 | | glyceraldehyde 3-phosphate dehydrogenase | 0.96 | ABIE53_003740 | | 3-dehydroquinate synthase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.99 | H281DRAFT_06315 | | glyceraldehyde-3-phosphate dehydrogenase (NAD+) | 0.96 | H281DRAFT_05615 | | 3-dehydroquinate synthase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.96 | QEN71_RS27005 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.89 | QEN71_RS28035 | | 3-dehydroquinate synthase | 0.68 | 4 |
| Castellaniella sp019104865 MT123 | 0.87 | ABCV34_RS15455 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.58 | ABCV34_RS12705 | | 3-dehydroquinate synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.76 | ABZR86_RS18615 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.39 | ABZR86_RS10480 | | 3-dehydroquinate synthase | 0.71 | 61 |
| Shewanella sp. ANA-3 | 0.72 | Shewana3_2124 | | glyceraldehyde-3-phosphate dehydrogenase (RefSeq) | 0.52 | Shewana3_3893 | aroB | 3-dehydroquinate synthase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.71 | Shew_2002 | | glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) | 0.51 | Shew_0214 | | 3-dehydroquinate synthase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.71 | Sama_1808 | | glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq) | 0.55 | Sama_3367 | | 3-dehydroquinate synthase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.71 | SO2345 | gapA-2 | glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file) | 0.53 | SO0287 | aroB | 3-dehydroquinate synthase (NCBI ptt file) | — | — |
| Kangiella aquimarina DSM 16071 | 0.67 | B158DRAFT_0511 | | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12) | 0.44 | B158DRAFT_0764 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.67 | Psyr_1108 | | glyceraldehyde-3-phosphate dehydrogenase | 0.54 | Psyr_0409 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.67 | Psyr_1108 | | glyceraldehyde-3-phosphate dehydrogenase | 0.54 | Psyr_0409 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.66 | PFLU_RS24335 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.57 | PFLU_RS02030 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas simiae WCS417 | 0.66 | PS417_22695 | | glyceraldehyde-3-phosphate dehydrogenase | 0.57 | PS417_01985 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.66 | PFLU_RS24335 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.57 | PFLU_RS02030 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.66 | Pf1N1B4_602 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.56 | Pf1N1B4_1537 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Marinobacter adhaerens HP15 | 0.65 | HP15_2175 | | glyceraldehyde-3-phosphate dehydrogenase, type I | 0.55 | HP15_480 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas sp. RS175 | 0.65 | PFR28_00560 | | Glyceraldehyde-3-phosphate dehydrogenase 1 | 0.54 | PFR28_05013 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_1888 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.56 | PfGW456L13_275 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.65 | AO353_03425 | | glyceraldehyde-3-phosphate dehydrogenase | 0.55 | AO353_12505 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_2899 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.56 | Pf6N2E2_3754 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_05225 | | glyceraldehyde-3-phosphate dehydrogenase | 0.56 | AO356_09385 | | 3-dehydroquinate synthase | — | — |
| Sinorhizobium meliloti 1021 | 0.62 | SMc03979 | | glyceraldehyde-3-phosphate dehydrogenase | 0.38 | SMc00696 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas putida KT2440 | 0.62 | PP_1009 | | glyceraldehyde-3-phosphate dehydrogenase | 0.58 | PP_5078 | | 3-dehydroquinate synthase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_004865 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.37 | TX73_002610 | | 3-dehydroquinate synthase | — | — |
| Agrobacterium fabrum C58 | 0.61 | Atu3737 | | glyceraldehyde 3-phosphate dehydrogenase | 0.36 | Atu3625 | | 3-dehydroquinate synthase | — | — |
| Rhodospirillum rubrum S1H | 0.61 | Rru_A0222 | | Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI) | 0.43 | Rru_A3741 | | 3-dehydroquinate synthase (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_0730 | | glyceraldehyde-3-phosphate dehydrogenase, type I | 0.35 | Ga0059261_3591 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Rhizobium sp. OAE497 | 0.60 | ABIE40_RS15870 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.38 | ABIE40_RS17670 | | 3-dehydroquinate synthase | — | — |
| Azospirillum brasilense Sp245 | 0.59 | AZOBR_RS10375 | | glyceraldehyde-3-phosphate dehydrogenase | 0.38 | AZOBR_RS03220 | | 3-dehydroquinate synthase | — | — |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_02850 | | Glyceraldehyde-3-phosphate dehydrogenase 1 | 0.39 | MPMX19_02639 | | 3-dehydroquinate synthase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_1742 | | glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) | 0.36 | Dshi_1608 | | 3-dehydroquinate synthase (RefSeq) | — | — |
| Dechlorosoma suillum PS | 0.58 | Dsui_1560 | | glyceraldehyde-3-phosphate dehydrogenase, type I | 0.57 | Dsui_1095 | | 3-dehydroquinate synthase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.57 | A4249_RS10040 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.38 | A4249_RS04175 | | 3-dehydroquinate synthase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.56 | PGA1_c27490 | | glyceraldehyde-3-phosphate dehydrogenase Gap | 0.37 | PGA1_c14100 | | 3-dehydroquinate synthase AroB | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.56 | CCNA_03358 | | glyceraldehyde 3-phosphate dehydrogenase | 0.40 | CCNA_03104 | | 3-dehydroquinate synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.56 | CCNA_03358 | | glyceraldehyde 3-phosphate dehydrogenase | 0.40 | CCNA_03104 | | 3-dehydroquinate synthase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF3022 | | D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) | 0.48 | GFF630 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 78 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_19385 | epd | erythrose-4-phosphate dehydrogenase | 0.50 | OKFHMN_17115 | aroB | 3-dehydroquinate synthase | 0.63 | 42 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_09905 | epd | erythrose-4-phosphate dehydrogenase | 0.50 | MCAODC_07645 | aroB | 3-dehydroquinate synthase | low | > 87 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_23015 | epd | erythrose-4-phosphate dehydrogenase | 0.50 | JDDGAC_20745 | aroB | 3-dehydroquinate synthase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_00789 | | D-erythrose-4-phosphate dehydrogenase | 0.51 | OHPLBJKB_00314 | | 3-dehydroquinate synthase | low | > 73 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_09835 | epd | erythrose-4-phosphate dehydrogenase | 0.51 | BNILDI_02615 | aroB | 3-dehydroquinate synthase | low | > 75 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_17150 | epd | erythrose-4-phosphate dehydrogenase | 0.50 | NIAGMN_14885 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli BL21 | 0.55 | ECD_02758 | | D-erythrose 4-phosphate dehydrogenase | 0.51 | ECD_03241 | | 3-dehydroquinate synthase | low | > 61 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_11295 | epd | erythrose-4-phosphate dehydrogenase | 0.51 | NOLOHH_08905 | aroB | 3-dehydroquinate synthase | low | > 75 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_08755 | epd | erythrose-4-phosphate dehydrogenase | 0.50 | KEDOAH_11025 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli BW25113 | 0.55 | b2927 | epd | D-erythrose 4-phosphate dehydrogenase (NCBI) | 0.50 | b3389 | aroB | 3-dehydroquinate synthase (NCBI) | 0.31 | 27 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS16265 | | erythrose-4-phosphate dehydrogenase | 0.50 | ECOLIN_RS19360 | | 3-dehydroquinate synthase | low | > 55 |
| Pantoea sp. MT58 | 0.55 | IAI47_03685 | | erythrose-4-phosphate dehydrogenase | 0.50 | IAI47_01895 | | 3-dehydroquinate synthase | — | — |
| Escherichia fergusonii Becca | 0.54 | EFB2_00979 | | D-erythrose-4-phosphate dehydrogenase | 0.50 | EFB2_00439 | | 3-dehydroquinate synthase | 0.30 | 78 |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_18695 | epd | erythrose-4-phosphate dehydrogenase | 0.50 | HEPCGN_15935 | aroB | 3-dehydroquinate synthase | low | > 87 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS23985 | | erythrose-4-phosphate dehydrogenase | 0.49 | BWI76_RS26085 | | 3-dehydroquinate synthase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2973 | | erythrose-4-phosphate dehydrogenase | 0.48 | EX28DRAFT_4153 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_3784 | | glyceraldehyde-3-phosphate dehydrogenase, type I | 0.54 | Psest_3713 | | 3-dehydroquinate synthase | — | — |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_03779 | | D-erythrose-4-phosphate dehydrogenase | 0.49 | MPMX20_04278 | | 3-dehydroquinate synthase | low | > 85 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_21015 | | erythrose-4-phosphate dehydrogenase | 0.49 | IAI46_23700 | | 3-dehydroquinate synthase | low | > 86 |
| Rahnella sp. WP5 | 0.52 | EX31_RS21405 | | erythrose-4-phosphate dehydrogenase | 0.51 | EX31_RS04720 | | 3-dehydroquinate synthase | — | — |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS02685 | | erythrose-4-phosphate dehydrogenase | 0.48 | HER17_RS01780 | | 3-dehydroquinate synthase | low | > 75 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.52 | CA264_03770 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.24 | CA264_13105 | | 3-dehydroquinate synthase | — | — |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS05535 | epd | erythrose-4-phosphate dehydrogenase | 0.48 | LU632_RS22865 | aroB | 3-dehydroquinate synthase | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.52 | Rv1436 | | Probable glyceraldehyde 3-phosphate dehydrogenase Gap (GAPDH) | 0.30 | Rv2538c | | 3-dehydroquinate synthase AroB | — | — |
| Dickeya dianthicola 67-19 | 0.51 | HGI48_RS18445 | | erythrose-4-phosphate dehydrogenase | 0.48 | HGI48_RS19675 | | 3-dehydroquinate synthase | — | — |
| Dickeya dianthicola ME23 | 0.51 | DZA65_RS19580 | | erythrose-4-phosphate dehydrogenase | 0.48 | DZA65_RS20760 | | 3-dehydroquinate synthase | — | — |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS18520 | | erythrose-4-phosphate dehydrogenase | 0.49 | DDA3937_RS19545 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_10765 | | erythrose-4-phosphate dehydrogenase | 0.57 | OH686_10015 | | 3-dehydroquinate synthase | — | — |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_00862 | | D-erythrose-4-phosphate dehydrogenase | 0.53 | MIT1002_00447 | | 3-dehydroquinate synthase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.50 | CSW01_02530 | | D-erythrose-4-phosphate dehydrogenase | 0.50 | CSW01_13300 | | 3-dehydroquinate synthase | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_01087 | | D-erythrose-4-phosphate dehydrogenase | 0.55 | MPMX26_02810 | | 3-dehydroquinate synthase | — | — |
| Variovorax sp. SCN45 | 0.49 | GFF7175 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.61 | GFF5325 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS11435 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.71 | RPSI07_RS10300 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS05865 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.72 | RALBFv3_RS06935 | | 3-dehydroquinate synthase | — | — |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS02440 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.63 | ABID97_RS23255 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum UW163 | 0.49 | UW163_RS07760 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.72 | UW163_RS06680 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.49 | RS_RS13755 | | aldehyde dehydrogenase | 0.71 | RS_RS14880 | | 3-dehydroquinate synthase | — | — |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS05540 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.41 | LRK55_RS04085 | | 3-dehydroquinate synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.49 | ABZR87_RS01435 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.71 | ABZR87_RS02590 | | 3-dehydroquinate synthase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS05785 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.41 | LRK54_RS04310 | | 3-dehydroquinate synthase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS17570 | | glyceraldehyde-3-phosphate dehydrogenase | 0.75 | RR42_RS19005 | | 3-dehydroquinate synthase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.48 | ABZR88_RS12470 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.27 | ABZR88_RS05215 | | 3-dehydroquinate synthase | — | — |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS17095 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.42 | ABIE51_RS16100 | | 3-dehydroquinate synthase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.47 | Echvi_3029 | | glyceraldehyde-3-phosphate dehydrogenase, type I | 0.23 | Echvi_0121 | | 3-dehydroquinate synthase | — | — |
| Synechococcus elongatus PCC 7942 | 0.47 | Synpcc7942_1742 | gap2 | glyceraldehyde-3-phosphate dehydrogenase | 0.40 | Synpcc7942_0525 | aroB | 3-dehydroquinate synthase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_01060 | gap | type I glyceraldehyde-3-phosphate dehydrogenase | 0.41 | OKGIIK_11185 | aroB | 3-dehydroquinate synthase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.1236.1 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.38 | Xcc-8004.1615.1 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_648 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.56 | Ac3H11_4705 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.45 | HMPREF1078_RS15885 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.22 | HMPREF1078_RS04395 | | 3-dehydroquinate synthase | — | — |
| Bacteroides stercoris CC31F | 0.45 | HMPREF1181_RS06145 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.24 | HMPREF1181_RS09265 | | 3-dehydroquinate synthase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.44 | AMB_RS02635 | | type I glyceraldehyde-3-phosphate dehydrogenase | 0.40 | AMB_RS19865 | | 3-dehydroquinate synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF1114 | | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) | 0.60 | GFF1331 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 90 |
Not shown: 11 genomes with orthologs for BPHYT_RS16835 only; 0 genomes with orthologs for BPHYT_RS17885 only