Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS13705 in Burkholderia phytofirmans PsJN

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS13705 chorismate synthase 0.75 4
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.97 ABIE53_002916 chorismate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.97 H281DRAFT_04489 chorismate synthase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.95 QEN71_RS05215 chorismate synthase 0.83 3
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.84 RPSI07_RS15640 chorismate synthase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.84 RALBFv3_RS01850 chorismate synthase — —
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.84 UW163_RS15160 chorismate synthase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.84 RS_RS07885 chorismate synthase 0.50 28
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.87 ABZR87_RS13790 chorismate synthase 0.55 41
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.80 HSERO_RS16525 chorismate synthase — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.86 RR42_RS06485 chorismate synthase 0.87 3
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.66 OH686_00675 chorismate synthase — —
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.66 PP_1830 Chorismate synthase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.62 Shewana3_1469 chorismate synthase (RefSeq) 0.95 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.65 Psyr_1853 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.65 Psyr_1853 chorismate synthase — —
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.64 PFR28_03126 Chorismate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.64 AO356_19540 chorismate synthase — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.64 PS417_19315 chorismate synthase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.64 PFLU_RS21280 chorismate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 Pf6N2E2_5822 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 Pf1N1B4_3780 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.64 PFLU_RS21280 chorismate synthase — —
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.71 HP15_1838 chorismate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.64 CSW01_10560 chorismate synthase low > 62
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 PfGW456L13_4165 Chorismate synthase (EC 4.2.3.5) 0.73 47
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.76 ABCV34_RS04300 chorismate synthase — —
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.65 Psest_1903 chorismate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.65 AO353_02250 chorismate synthase low > 101
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.65 Sama_2159 chorismate synthase (RefSeq) — —
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.61 IAI47_06150 chorismate synthase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.63 Shew_2416 chorismate synthase (RefSeq) 0.89 3
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.62 OHPLBJKB_01376 Chorismate synthase low > 73
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.62 b2329 aroC chorismate synthase (NCBI) 0.94 9
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.62 ECD_02254 chorismate synthase 0.71 3
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.62 BNILDI_13170 aroC chorismate synthase low > 75
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.62 NOLOHH_14250 aroC chorismate synthase 0.89 16
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.62 HEPCGN_21820 aroC chorismate synthase 0.88 5
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.62 KEDOAH_05580 aroC chorismate synthase — —
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.62 MCAODC_13655 aroC chorismate synthase 0.85 18
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.62 NIAGMN_20390 aroC chorismate synthase — —
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.62 OKFHMN_22615 aroC chorismate synthase 0.93 45
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.62 JDDGAC_26575 aroC chorismate synthase 0.75 69
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.62 ECOLIN_RS13490 chorismate synthase — —
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.76 Ac3H11_2925 Chorismate synthase (EC 4.2.3.5) 0.91 13
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.62 EFB2_01529 Chorismate synthase 0.65 50
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.61 EX28DRAFT_0275 chorismate synthase (EC 4.2.3.5) — —
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.63 IAI46_18025 chorismate synthase 0.69 15
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.65 LU632_RS07775 aroC chorismate synthase 0.56 31
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.61 BWI76_RS20435 chorismate synthase 0.53 83
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.61 MPMX20_03264 Chorismate synthase 0.89 9
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 GFF1950 Chorismate synthase (EC 4.2.3.5) low > 78
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.70 GFF2627 Chorismate synthase (EC 4.2.3.5) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.58 MPMX26_01340 Chorismate synthase — —
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.62 DDA3937_RS14580 chorismate synthase — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.63 DZA65_RS15465 chorismate synthase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.66 MIT1002_01229 Chorismate synthase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.63 HGI48_RS14530 chorismate synthase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.70 ABID97_RS19805 chorismate synthase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.63 HER17_RS06935 chorismate synthase 0.89 50
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.67 Xcc-8004.1955.1 Chorismate synthase (EC 4.2.3.5) 0.85 17
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.65 ABIE51_RS08220 chorismate synthase — —
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.47 B158DRAFT_2433 chorismate synthase (EC 4.2.3.5) 0.82 3
Methanococcus maripaludis JJ 0.21 MMJJ_RS00280 shikimate dehydrogenase 0.35 MMJJ_RS07475 chorismate synthase — —
Methanococcus maripaludis S2 0.21 MMP_RS04855 shikimate dehydrogenase 0.34 MMP_RS06880 chorismate synthase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.54 TX73_006170 chorismate synthase — —
Sinorhizobium meliloti 1021 0.20 SMc02791 shikimate 5-dehydrogenase 0.50 SMc00007 chorismate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.47 DVU0894 aroC chorismate synthase (TIGR) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.45 Synpcc7942_0212 aroC chorismate synthase — —
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.45 DvMF_1408 chorismate synthase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.53 PGA1_c34060 chorismate synthase AroC — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.56 Rru_A2623 Chorismate synthase (NCBI) — —
Azospirillum sp. SherDot2 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.56 MPMX19_01810 Chorismate synthase — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.50 ABIE40_RS03980 chorismate synthase — —
Bosea sp. OAE506 0.18 ABIE41_RS04650 shikimate dehydrogenase 0.53 ABIE41_RS10190 chorismate synthase — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase 0.58 AZOBR_RS10730 chorismate synthase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.47 CCNA_03256 chorismate synthase low > 67
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.47 CCNA_03256 chorismate synthase low > 66
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.43 HMPREF1078_RS16710 chorismate synthase 0.91 40
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.39 HMPREF1181_RS08365 chorismate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.43 ABZR88_RS06995 chorismate synthase — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.39 HMPREF1058_RS16730 chorismate synthase 0.81 3
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS12665 shikimate dehydrogenase 0.39 ABI39_RS12645 chorismate synthase 0.87 2
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.47 Echvi_1518 chorismate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.43 CA264_19835 chorismate synthase — —
Magnetospirillum magneticum AMB-1 0.14 AMB_RS23010 shikimate dehydrogenase 0.57 AMB_RS08025 chorismate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.45 CA265_RS11645 chorismate synthase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.38 BT2084 chorismate synthase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.38 BACOVA_03296 chorismate synthase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.25 Rv2540c Probable chorismate synthase AroF (5-enolpyruvylshikimate-3-phosphate phospholyase) — —

Not shown: 1 genomes with orthologs for BPHYT_RS16975 only; 13 genomes with orthologs for BPHYT_RS13705 only