Conservation of cofitness between B158DRAFT_0582 and B158DRAFT_0683 in Kangiella aquimarina DSM 16071

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_0582 TIGR00255 family protein 1.0 B158DRAFT_0683 Transcriptional accessory protein 0.87 2
Alteromonas macleodii MIT1002 0.57 MIT1002_04072 hypothetical protein 0.62 MIT1002_04012 hypothetical protein low > 70
Dickeya dadantii 3937 0.56 DDA3937_RS20645 YicC family protein 0.59 DDA3937_RS19635 RNA-binding transcriptional accessory protein low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS00540 YicC family protein 0.60 HGI48_RS19770 RNA-binding transcriptional accessory protein low > 71
Dickeya dianthicola ME23 0.55 DZA65_RS00575 YicC family protein 0.60 DZA65_RS20860 RNA-binding transcriptional accessory protein low > 75
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_01110 YicC family protein 0.59 CSW01_13705 RNA-binding transcriptional accessory protein low > 62
Enterobacter sp. TBS_079 0.55 MPMX20_00091 hypothetical protein 0.59 MPMX20_04294 Protein YhgF low > 85
Shewanella sp. ANA-3 0.54 Shewana3_3778 hypothetical protein (RefSeq) 0.58 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) 0.42 41
Shewanella oneidensis MR-1 0.54 SO4257 conserved hypothetical protein TIGR00255 (NCBI ptt file) 0.58 SO4629 conserved hypothetical protein (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.54 HER17_RS20905 YicC family protein 0.60 HER17_RS01615 RNA-binding transcriptional accessory protein low > 75
Shewanella amazonensis SB2B 0.54 Sama_0319 hypothetical protein (RefSeq) 0.59 Sama_3508 hypothetical protein (RefSeq) low > 62
Klebsiella michiganensis M5al 0.54 BWI76_RS27395 hypothetical protein 0.59 BWI76_RS26655 transcription accessory protein low > 92
Erwinia tracheiphila SCR3 0.54 LU632_RS22050 YicC family protein 0.60 LU632_RS22955 RNA-binding transcriptional accessory protein low > 74
Serratia liquefaciens MT49 0.54 IAI46_24855 YicC family protein 0.60 IAI46_23800 RNA-binding transcriptional accessory protein low > 86
Escherichia coli BW25113 0.53 b3644 yicC hypothetical protein (NCBI) 0.60 b3407 yhgF orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR38 0.53 HEPCGN_14405 yicC UPF0701 protein YicC 0.60 HEPCGN_15835 yhgF Protein YhgF low > 87
Escherichia coli Nissle 1917 0.53 ECOLIN_RS20760 YicC/YloC family endoribonuclease 0.60 ECOLIN_RS19465 Tex family protein low > 55
Escherichia coli ECRC99 0.53 KEDOAH_12560 yicC UPF0701 protein YicC 0.60 KEDOAH_11115 yhgF Protein YhgF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00058 hypothetical protein 0.60 OHPLBJKB_00296 Protein YhgF low > 73
Escherichia coli ECRC101 0.53 MCAODC_06095 yicC UPF0701 protein YicC 0.60 MCAODC_07555 yhgF Protein YhgF low > 87
Enterobacter asburiae PDN3 0.53 EX28DRAFT_3894 TIGR00255 family protein 0.59 EX28DRAFT_4136 Transcriptional accessory protein low > 76
Escherichia coli ECRC102 0.53 NIAGMN_13345 yicC UPF0701 protein YicC 0.60 NIAGMN_14795 yhgF Protein YhgF — —
Escherichia coli ECRC100 0.53 OKFHMN_15585 yicC UPF0701 protein YicC 0.60 OKFHMN_17025 yhgF Protein YhgF low > 80
Escherichia coli ECOR27 0.53 NOLOHH_07465 yicC UPF0701 protein YicC 0.60 NOLOHH_08815 yhgF Protein YhgF low > 75
Escherichia coli BL21 0.53 ECD_03501 UPF0701 family protein 0.60 ECD_03259 putative transcriptional accessory protein 0.63 30
Escherichia coli ECRC62 0.53 BNILDI_04050 yicC UPF0701 protein YicC 0.60 BNILDI_02705 yhgF Protein YhgF low > 75
Pantoea sp. MT58 0.53 IAI47_00580 YicC family protein 0.59 IAI47_01805 RNA-binding transcriptional accessory protein low > 76
Escherichia fergusonii Becca 0.53 EFB2_00169 hypothetical protein 0.60 EFB2_00421 Protein YhgF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF365 Protein YicC 0.59 GFF611 Transcription accessory protein (S1 RNA-binding domain) low > 78
Rahnella sp. WP5 0.53 EX31_RS14510 YicC family protein 0.59 EX31_RS04840 RNA-binding transcriptional accessory protein low > 89
Escherichia coli ECRC98 0.53 JDDGAC_19210 yicC UPF0701 protein YicC 0.60 JDDGAC_20655 yhgF Protein YhgF low > 86
Shewanella loihica PV-4 0.53 Shew_3489 hypothetical protein (RefSeq) 0.61 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_4364 Protein YicC 0.59 Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) low > 103
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_09265 hypothetical protein 0.59 AO353_11740 DNA damage response protein (yhgF like) (from data) low > 101
Pseudomonas stutzeri RCH2 0.51 Psest_3814 TIGR00255 family protein 0.59 Psest_3996 Transcriptional accessory protein — —
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_12495 hypothetical protein 0.59 AO356_10175 transcription accessory protein low > 104
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_783 Protein YicC 0.59 PfGW456L13_428 Transcription accessory protein (S1 RNA-binding domain) low > 87
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_2116 Protein YicC 0.59 Pf1N1B4_1771 Transcription accessory protein (S1 RNA-binding domain) — —
Pseudomonas sp. RS175 0.50 PFR28_04421 hypothetical protein 0.59 PFR28_04867 Protein YhgF — —
Pseudomonas putida KT2440 0.50 PP_5295 conserved protein of unknown function 0.59 PP_0245 putative transcriptional accessory protein low > 96
Pseudomonas sp. S08-1 0.50 OH686_13565 UPF0701 protein YicC 0.59 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) low > 80
Pseudomonas simiae WCS417 0.49 PS417_27815 hypothetical protein 0.59 PS417_01165 transcription accessory protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS29495 YicC family protein 0.59 PFLU_RS01275 RNA-binding transcriptional accessory protein low > 109
Pseudomonas fluorescens SBW25 0.49 PFLU_RS29495 YicC family protein 0.59 PFLU_RS01275 RNA-binding transcriptional accessory protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0212 Conserved hypothetical protein 255 0.59 Psyr_0257 RNA binding S1 low > 86
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0212 Conserved hypothetical protein 255 0.59 Psyr_0257 RNA binding S1 low > 86
Marinobacter adhaerens HP15 0.48 HP15_301 conserved hypothetical protein 0.61 HP15_216 DNA damage response protein (yhgF like) (from data) low > 73
Lysobacter sp. OAE881 0.42 ABIE51_RS17280 YicC/YloC family endoribonuclease 0.57 ABIE51_RS00300 Tex family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS11895 YicC/YloC family endoribonuclease 0.57 ABZR86_RS15750 Tex family protein low > 74
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1220.1 Protein YicC 0.55 Xcc-8004.2426.1 Transcription accessory protein (S1 RNA-binding domain) low > 74
Rhodanobacter denitrificans MT42 0.39 LRK55_RS11475 YicC family protein 0.58 LRK55_RS09820 Tex family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS11750 YicC family protein 0.58 LRK54_RS10180 RNA-binding transcriptional accessory protein low > 59
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_12145 yicC YicC-like family, N-terminal region 0.57 OKGIIK_13735 tex RNA-binding transcriptional accessory protein — —
Dechlorosoma suillum PS 0.37 Dsui_0497 TIGR00255 family protein 0.60 Dsui_2546 transcriptional accessory protein low > 51
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS04905 hypothetical protein 0.57 RR42_RS07565 transcription accessory protein — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS13855 YicC family protein 0.57 RPSI07_RS15945 RNA-binding transcriptional accessory protein low > 81
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS15240 YicC/YloC family endoribonuclease 0.58 ABZR87_RS13340 Tex family protein low > 80
Ralstonia solanacearum GMI1000 0.35 RS_RS10815 YicC family protein 0.58 RS_RS08180 RNA-binding transcriptional accessory protein — —
Ralstonia solanacearum UW163 0.34 UW163_RS10390 YicC family protein 0.57 UW163_RS14855 RNA-binding transcriptional accessory protein — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03330 YicC family protein 0.57 RALBFv3_RS01545 RNA-binding transcriptional accessory protein low > 76
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS03650 YicC/YloC family endoribonuclease 0.58 QEN71_RS06045 Tex family protein 0.33 152
Paraburkholderia graminis OAS925 0.34 ABIE53_003233 uncharacterized protein (TIGR00255 family) 0.58 ABIE53_002728 uncharacterized protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04007 TIGR00255 family protein 0.58 H281DRAFT_00530 uncharacterized protein low > 103
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS10650 hypothetical protein 0.58 HSERO_RS20945 RNA-binding protein low > 78
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS15320 hypothetical protein 0.58 BPHYT_RS12510 RNA-binding protein low > 109
Variovorax sp. OAS795 0.31 ABID97_RS23655 YicC/YloC family endoribonuclease 0.52 ABID97_RS15930 Tex family protein low > 91
Phaeobacter inhibens DSM 17395 0.31 PGA1_c15840 TIGR00255 family protein 0.53 PGA1_c09850 S1 domain-containing protein low > 62
Variovorax sp. SCN45 0.31 GFF2378 UPF0701 protein YicC 0.52 GFF2 Transcription accessory protein (S1 RNA-binding domain) — —
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3667 Protein YicC 0.53 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) — —
Azospirillum sp. SherDot2 0.28 MPMX19_00983 hypothetical protein 0.59 MPMX19_04277 Protein YhgF — —
Rhodopseudomonas palustris CGA009 0.28 TX73_015880 YicC family protein 0.54 TX73_003025 Tex family protein low > 86
Sinorhizobium meliloti 1021 0.27 SMc00576 hypothetical protein 0.52 SMc02644 hypothetical protein low > 103
Azospirillum brasilense Sp245 0.27 AZOBR_RS16330 hypothetical protein 0.59 AZOBR_RS14535 RNA-binding protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF3251 Protein YicC 0.52 GFF4649 Transcription accessory protein (S1 RNA-binding domain) — —
Rhizobium sp. OAE497 0.27 ABIE40_RS06380 YicC/YloC family endoribonuclease 0.52 ABIE40_RS05475 Tex family protein low > 107
Castellaniella sp019104865 MT123 0.27 ABCV34_RS03510 DUF1732 domain-containing protein 0.54 ABCV34_RS01870 Tex family protein low > 48
Magnetospirillum magneticum AMB-1 0.27 AMB_RS03835 YicC family protein 0.58 AMB_RS17285 RNA-binding transcriptional accessory protein low > 64
Agrobacterium fabrum C58 0.26 Atu1100 hypothetical protein 0.51 Atu0648 hypothetical protein low > 89
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_1140 hypothetical protein (RefSeq) 0.39 DvMF_0870 RNA binding S1 domain protein (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU0898 conserved hypothetical protein (TIGR) 0.39 DVU2246 S1 RNA binding domain protein (TIGR) low > 55
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS07870 YicC family protein 0.41 HMPREF1181_RS04035 RNA-binding transcriptional accessory protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.23 BT_2008 hypothetical protein (RefSeq) 0.40 BT1238 putative RNA binding protein with S1 RNA-binding domain (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS01665 YicC/YloC family endoribonuclease 0.42 ABZR88_RS21695 Tex family protein — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_14585 YicC family protein 0.45 CA264_02750 RNA-binding transcriptional accessory protein low > 74
Bacteroides ovatus ATCC 8483 0.22 BACOVA_01437 hypothetical protein 0.39 BACOVA_00531 Tex-like protein N-terminal domain protein low > 94
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS00515 YicC family protein 0.38 HMPREF1058_RS18285 RNA-binding transcriptional accessory protein low > 67
Parabacteroides merdae CL09T00C40 0.22 HMPREF1078_RS10050 YicC family protein 0.40 HMPREF1078_RS02415 Tex family protein — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_2830 TIGR00255 family protein 0.43 Echvi_3978 Transcriptional accessory protein low > 79
Phocaeicola dorei CL03T12C01 0.21 ABI39_RS08135 YicC family protein 0.38 ABI39_RS14580 RNA-binding transcriptional accessory protein low > 72
Fusobacterium nucleatum SB010 0.21 HUW76_10345 YicC family protein 0.35 HUW76_00320 RNA-binding transcriptional accessory protein low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS18780 YicC family protein 0.44 CA265_RS18880 RNA-binding transcriptional accessory protein low > 88

Not shown: 6 genomes with orthologs for B158DRAFT_0582 only; 3 genomes with orthologs for B158DRAFT_0683 only