| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu2747 | | hypothetical protein | 1.0 | Atu3784 | | glutamate synthase large subunit | 0.86 | 16 |
| Sinorhizobium meliloti 1021 | 0.77 | SMc02812 | | hypothetical protein | 0.87 | SMc04028 | | glutamate synthase | 0.38 | 89 |
| Rhizobium sp. OAE497 | 0.76 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.89 | ABIE40_RS16275 | | glutamate synthase large subunit | — | — |
| Magnetospirillum magneticum AMB-1 | 0.61 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | AMB_RS02685 | | glutamate synthase large subunit | low | > 64 |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.39 | MPMX19_02657 | | Glutamate synthase [NADPH] large chain | low | > 112 |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_001485 | | YggS family pyridoxal phosphate-dependent enzyme | 0.69 | TX73_004590 | | glutamate synthase large subunit | — | — |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.74 | ABIE41_RS08565 | | glutamate synthase large subunit | low | > 77 |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A3634 | | Protein of unknown function UPF0001 (NCBI) | 0.39 | Rru_A0019 | | Glutamate synthase (ferredoxin) (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.53 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.37 | Dshi_0002 | | Glutamate synthase (ferredoxin) (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.53 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | 0.35 | A4249_RS16105 | | glutamate synthase large subunit | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS20395 | | YggS family pyridoxal phosphate-dependent enzyme | 0.60 | RS_RS14860 | | glutamate synthase subunit alpha | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.53 | PGA1_c33360 | | putative alanine racemase | 0.37 | PGA1_c36100 | | glutamate synthase [NADPH] large chain | low | > 62 |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.36 | CCNA_03722 | | glutamate synthase (NADPH) large chain GltB | low | > 67 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.36 | CCNA_03722 | | glutamate synthase (NADPH) large chain GltB | 0.56 | 65 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS02580 | | YggS family pyridoxal phosphate-dependent enzyme | 0.59 | RPSI07_RS10320 | | glutamate synthase subunit alpha | low | > 81 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS18890 | | YggS family pyridoxal phosphate-dependent enzyme | 0.60 | UW163_RS06700 | | glutamate synthase subunit alpha | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS20285 | | YggS family pyridoxal phosphate-dependent enzyme | 0.60 | RALBFv3_RS06915 | | glutamate synthase subunit alpha | low | > 76 |
| Sphingomonas koreensis DSMZ 15582 | 0.49 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | 0.38 | Ga0059261_1800 | | Glutamate synthase domain 2 | low | > 68 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS03335 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | DZA65_RS01635 | | glutamate synthase large subunit | low | > 75 |
| Shewanella loihica PV-4 | 0.37 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.38 | Shew_1032 | gltB | glutamate synthase subunit alpha (RefSeq) | low | > 60 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS18995 | | hypothetical protein | 0.60 | HSERO_RS19595 | | glutamate synthase | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.59 | QEN71_RS28010 | | glutamate synthase-related protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS03495 | | hypothetical protein | 0.59 | BPHYT_RS17855 | | glutamate synthase | 0.59 | 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_04680 | | hypothetical protein | 0.60 | H281DRAFT_05620 | | glutamate synthase (NADH) large subunit | low | > 103 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.37 | Shewana3_3050 | gltB | glutamate synthase subunit alpha (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.34 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.46 | CSW01_12020 | | glutamate synthase large subunit | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | 0.59 | ABZR87_RS02570 | | glutamate synthase-related protein | low | > 80 |
| Dickeya dadantii 3937 | 0.33 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | DDA3937_RS01665 | | glutamate synthase large subunit | low | > 74 |
| Shewanella amazonensis SB2B | 0.33 | Sama_2477 | | hypothetical protein (RefSeq) | 0.37 | Sama_0857 | gltB | glutamate synthase subunit alpha (RefSeq) | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.58 | ABCV34_RS11150 | | glutamate synthase-related protein | low | > 48 |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.38 | MIT1002_03139 | | Glutamate synthase [NADPH] large chain precursor | low | > 70 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.38 | EX28DRAFT_3275 | | Glutamate synthase domain 2 | 0.59 | 60 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | 0.58 | ABID97_RS23225 | | glutamate synthase-related protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.35 | LRK54_RS10960 | | glutamate synthase large subunit | low | > 59 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.58 | GFF1327 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | low | > 90 |
| Shewanella oneidensis MR-1 | 0.32 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.37 | SO1325 | gltB | glutamate synthase, large subunit (NCBI ptt file) | low | > 76 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | 0.35 | LRK55_RS10665 | | glutamate synthase large subunit | low | > 63 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.37 | Psyr_0411 | | glutamate synthase (NADPH) large subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_10505 | | hypothetical protein | 0.37 | AO353_12515 | | glutamate synthase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.37 | Psyr_0411 | | glutamate synthase (NADPH) large subunit | low | > 86 |
| Variovorax sp. SCN45 | 0.31 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | 0.58 | GFF5332 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | — | — |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.38 | BWI76_RS25315 | | glutamate synthase large subunit | low | > 92 |
| Dickeya dianthicola 67-19 | 0.31 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | HGI48_RS01560 | | glutamate synthase large subunit | low | > 71 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.38 | OH686_10005 | | Glutamate synthase [NADPH] large chain | low | > 80 |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.38 | MPMX20_04126 | | Glutamate synthase [NADPH] large chain | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | HER17_RS19910 | | glutamate synthase large subunit | low | > 75 |
| Escherichia fergusonii Becca | 0.30 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.38 | EFB2_00611 | | Glutamate synthase [NADPH] large chain | low | > 86 |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | JDDGAC_21510 | gltB | glutamate synthase large subunit | — | — |
| Escherichia coli ECRC101 | 0.30 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | OKFHMN_17885 | gltB | glutamate synthase large subunit | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.38 | OHPLBJKB_00488 | | Glutamate synthase [NADPH] large chain | low | > 73 |
| Escherichia coli ECRC101 | 0.30 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | MCAODC_08405 | gltB | glutamate synthase large subunit | — | — |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | NIAGMN_15645 | gltB | glutamate synthase large subunit | — | — |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | HEPCGN_16760 | gltB3 | Glutamate synthase domain 3 | low | > 85 |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | NOLOHH_09685 | gltB | glutamate synthase large subunit | low | > 57 |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.38 | ECOLIN_RS18475 | | glutamate synthase large subunit | low | > 52 |
| Escherichia coli BW25113 | 0.30 | b2951 | yggS | predicted enzyme (NCBI) | 0.38 | b3212 | gltB | glutamate synthase, large subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | BNILDI_01850 | gltB | glutamate synthase large subunit | — | — |
| Escherichia coli BL21 | 0.30 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.38 | ECD_03077 | | glutamate synthase, large subunit | low | > 60 |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.38 | KEDOAH_10265 | gltB | glutamate synthase large subunit | — | — |
| Dechlorosoma suillum PS | 0.30 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | 0.61 | Dsui_1096 | | glutamate synthase family protein | low | > 51 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.30 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.38 | GFF2956 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | low | > 78 |
| Rhodanobacter sp. FW510-T8 | 0.29 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.58 | OKGIIK_15200 | | Glutamate synthase subunit alpha | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | ABZR86_RS16795 | | glutamate synthase large subunit | — | — |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.58 | Ac3H11_4710 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | 0.36 | 68 |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.37 | Psest_3711 | | Glutamate synthase domain 2 | low | > 67 |
| Rahnella sp. WP5 | 0.29 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | EX31_RS12515 | | glutamate synthase large subunit | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_13425 | | hypothetical protein | 0.37 | AO356_09375 | | glutamate synthase | low | > 104 |
| Pseudomonas putida KT2440 | 0.28 | PP_5094 | | putative enzyme with PLP binding domain | 0.37 | PP_5076 | | L-glutamate synthase(NADPH) alpha subunit | low | > 96 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_26725 | | hypothetical protein | 0.37 | PS417_02000 | | glutamate synthase | 0.28 | 50 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | LU632_RS21315 | gltB | glutamate synthase large subunit | 0.58 | 46 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS17355 | | hypothetical protein | 0.58 | RR42_RS18990 | | glutamate synthase | low | > 128 |
| Pseudomonas fluorescens GW456-L13 | 0.27 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.37 | PfGW456L13_272 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.37 | PFLU_RS02045 | | glutamate synthase large subunit | low | > 109 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | 0.37 | MPMX26_02808 | | Glutamate synthase [NADPH] large chain | low | > 36 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.37 | PFLU_RS02045 | | glutamate synthase large subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.37 | Pf6N2E2_3752 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | low | > 103 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_288 | | alanine racemase domain protein | 0.38 | HP15_482 | | glutamate synthase subunit alpha | — | — |
| Pseudomonas sp. RS175 | 0.26 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.37 | PFR28_05015 | | Glutamate synthase [NADPH] large chain | low | > 88 |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_2060 | ylmE | hypothetical protein | 0.39 | Synpcc7942_0890 | glsF | glutamate synthase (ferredoxin) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | HMPREF1078_RS01270 | | glutamate synthase large subunit | low | > 61 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.25 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | 0.49 | ABZR88_RS06905 | | glutamate synthase large subunit | low | > 71 |
| Serratia liquefaciens MT49 | 0.25 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | IAI46_22345 | | glutamate synthase large subunit | low | > 86 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.25 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | 0.45 | BT0553 | | glutamate synthase, large subunit (NCBI ptt file) | low | > 81 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.25 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.37 | Xcc-8004.44.1 | | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | 0.47 | Echvi_1244 | | Glutamate synthase domain 2 | low | > 79 |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | 0.45 | BACOVA_03756 | | class II glutamine amidotransferase | low | > 94 |
| Bacteroides stercoris CC31F | 0.23 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | 0.45 | HMPREF1181_RS16055 | | glutamate synthase large subunit | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.23 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | 0.50 | CA265_RS08700 | | glutamate synthase large subunit | low | > 88 |
| Mycobacterium tuberculosis H37Rv | 0.21 | Rv2148c | | Conserved protein | 0.46 | Rv3859c | | Probable ferredoxin-dependent glutamate synthase [NADPH] (large subunit) GltB (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH))(NADPH-GOGAT) | — | — |
| Bifidobacterium breve UCC2003 | 0.21 | BBR_RS11570 | | YggS family pyridoxal phosphate-dependent enzyme | 0.44 | BBR_RS15255 | | glutamate synthase large subunit | low | > 34 |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | ABI39_RS20685 | | glutamate synthase large subunit | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | HMPREF1058_RS06920 | | glutamate synthase large subunit | low | > 67 |
Not shown: 9 genomes with orthologs for Atu2747 only; 1 genomes with orthologs for Atu3784 only