| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu1446 | | two component response regulator | 1.0 | Atu3783 | | glutamate synthase subunit beta | 0.46 | 16 |
| Rhizobium sp. OAE497 | 0.95 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | 0.93 | ABIE40_RS16270 | | glutamate synthase subunit beta | — | — |
| Sinorhizobium meliloti 1021 | 0.93 | SMc01043 | | nitrogen assimilation regulatory protein | 0.88 | SMc04026 | | glutamate synthase | 0.46 | 8 |
| Rhodopseudomonas palustris CGA009 | 0.75 | TX73_013420 | | nitrogen regulation protein NR(I) | 0.58 | TX73_004595 | | glutamate synthase subunit beta | — | — |
| Bosea sp. OAE506 | 0.73 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | 0.66 | ABIE41_RS08570 | | glutamate synthase subunit beta | — | — |
| Magnetospirillum magneticum AMB-1 | 0.70 | AMB_RS11950 | | nitrogen regulation protein NR(I) | 0.54 | AMB_RS11780 | | glutamate synthase subunit beta | — | — |
| Azospirillum sp. SherDot2 | 0.69 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | 0.26 | MPMX19_02658 | | Glutamate synthase [NADPH] small chain | — | — |
| Rhodospirillum rubrum S1H | 0.66 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | 0.23 | Rru_A0018 | | Glutamate synthase, NADH/NADPH, small subunit 2 (NCBI) | — | — |
| Caulobacter crescentus NA1000 | 0.56 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | 0.24 | CCNA_03721 | | glutamate synthase (NADPH) small chain GltD | 0.65 | 65 |
| Caulobacter crescentus NA1000 Δfur | 0.56 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | 0.24 | CCNA_03721 | | glutamate synthase (NADPH) small chain GltD | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.49 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | 0.25 | Ga0059261_1797 | | glutamate synthase small subunit family protein, proteobacterial | 0.62 | 14 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_1574 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.23 | Dshi_0001 | | glutamate synthase, small subunit (RefSeq) | 0.61 | 4 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | 0.27 | ECOLIN_RS18480 | | glutamate synthase subunit GltD | low | > 52 |
| Escherichia fergusonii Becca | 0.42 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | 0.26 | EFB2_00610 | | Glutamate synthase [NADPH] small chain | low | > 86 |
| Escherichia coli ECRC101 | 0.42 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | 0.27 | OKFHMN_17880 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli BL21 | 0.42 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | 0.26 | ECD_03078 | | glutamate synthase, 4Fe-4S protein, small subunit | 0.40 | 48 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | 0.27 | KEDOAH_10270 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli BW25113 | 0.42 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | 0.26 | b3213 | gltD | glutamate synthase, 4Fe-4S protein, small subunit (NCBI) | 0.40 | 3 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | 0.27 | MCAODC_08400 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | 0.27 | NIAGMN_15640 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | 0.27 | JDDGAC_21505 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | 0.26 | NOLOHH_09680 | gltD | glutamate synthase subunit GltD | low | > 57 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | 0.26 | BNILDI_01855 | gltD | glutamate synthase subunit GltD | — | — |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | 0.27 | MPMX20_04127 | | Glutamate synthase [NADPH] small chain | 0.80 | 3 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | 0.26 | EX28DRAFT_3276 | | glutamate synthase small subunit family protein, proteobacterial | 0.58 | 12 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | 0.26 | OHPLBJKB_00487 | | Glutamate synthase [NADPH] small chain | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF2220 | | Nitrogen regulation protein NR(I) | 0.26 | GFF2957 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 78 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.26 | BWI76_RS25320 | | glutamate synthase | 0.69 | 4 |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | 0.27 | HEPCGN_16755 | gltD | glutamate synthase subunit GltD | low | > 85 |
| Variovorax sp. SCN45 | 0.41 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | 0.48 | GFF5333 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS21440 | | nitrogen regulation protein NR(I) | 0.26 | HER17_RS19915 | | glutamate synthase small subunit | low | > 75 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_24960 | | nitrogen regulation protein NR(I) | 0.25 | IAI46_22350 | | glutamate synthase small subunit | 0.79 | 2 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | 0.51 | ABID97_RS23220 | | glutamate synthase subunit beta | 0.42 | 25 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | 0.27 | MPMX26_02807 | | Glutamate synthase [NADPH] small chain | 0.96 | 1 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | 0.50 | QEN71_RS28005 | | glutamate synthase subunit beta | low | > 153 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | 0.26 | HGI48_RS01555 | | glutamate synthase small subunit | 0.86 | 2 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | 0.26 | DZA65_RS01630 | | FAD-dependent oxidoreductase | 0.78 | 8 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | 0.26 | DDA3937_RS01660 | | FAD-dependent oxidoreductase | 0.79 | 13 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | 0.47 | RPSI07_RS10325 | | glutamate synthase subunit beta | low | > 81 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.26 | Shewana3_3051 | gltD | glutamate synthase subunit beta (RefSeq) | 0.90 | 3 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c14790 | | nitrogen regulation protein NtrC | 0.23 | PGA1_c36090 | | glutamate synthase [NADPH] small chain | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.27 | Shew_1031 | gltD | glutamate synthase subunit beta (RefSeq) | 0.64 | 47 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS12980 | | chemotaxis protein CheY | 0.52 | RR42_RS18985 | | glutamate synthase | 0.49 | 20 |
| Rahnella sp. WP5 | 0.40 | EX31_RS15880 | | nitrogen regulation protein NR(I) | 0.26 | EX31_RS12510 | | FAD-dependent oxidoreductase | 0.83 | 4 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_425 | | two-component response regulator NtrC | 0.26 | HP15_483 | | oxidoreductase Fe-S binding subunit | — | — |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | 0.50 | ABIE53_003732 | | glutamate synthase (NADPH/NADH) small chain | — | — |
| Shewanella oneidensis MR-1 | 0.40 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | 0.26 | SO1324 | gltD | glutamate synthase, small subunit (NCBI ptt file) | 0.78 | 5 |
| Shewanella amazonensis SB2B | 0.40 | Sama_3427 | | response regulator receiver protein (RefSeq) | 0.26 | Sama_0856 | gltD | glutamate synthase subunit beta (RefSeq) | 0.63 | 10 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.26 | Pf6N2E2_3751 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | 0.43 | 57 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS12935 | | chemotaxis protein CheY | 0.50 | BPHYT_RS17850 | | dihydropyrimidine dehydrogenase subunit A | — | — |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | 0.50 | ABZR87_RS02565 | | glutamate synthase subunit beta | 0.39 | 37 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.26 | AO356_09370 | | glutamate synthase | 0.38 | 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | 0.49 | H281DRAFT_05621 | | glutamate synthase (NADH) small subunit | 0.35 | 49 |
| Pseudomonas simiae WCS417 | 0.40 | PS417_01635 | | nitrogen regulation protein NR(I) | 0.26 | PS417_02005 | | glutamate synthase | 0.48 | 74 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.26 | PFLU_RS02050 | | NAD(P)-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.26 | PFLU_RS02050 | | NAD(P)-binding protein | 0.68 | 4 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | 0.26 | PFR28_05016 | | Glutamate synthase [NADPH] small chain | 0.39 | 26 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.26 | Psyr_0412 | | glutamate synthase (NADPH) small subunit | — | — |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | 0.26 | LU632_RS21320 | | glutamate synthase small subunit | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.26 | Pf1N1B4_1533 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | 0.58 | 10 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.26 | Psyr_0412 | | glutamate synthase (NADPH) small subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_12145 | | nitrogen regulation protein NR(I) | 0.26 | AO353_12520 | | glutamate synthase | 0.57 | 5 |
| Alteromonas macleodii MIT1002 | 0.39 | MIT1002_03186 | | Nitrogen regulation protein NR(I) | 0.26 | MIT1002_03140 | | Glutamate synthase [NADPH] small chain | 0.67 | 63 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_10640 | | nitrogen regulation protein NR(I) | 0.26 | OH686_10000 | | Glutamate synthase [NADPH] small chain | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | 0.26 | PfGW456L13_271 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | 0.75 | 4 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF5269 | | Nitrogen regulation protein NR(I) | 0.51 | GFF1326 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 90 |
| Pseudomonas putida KT2440 | 0.39 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.25 | PP_5075 | | glutamate synthase (NADPH) beta subunit | 0.65 | 5 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | 0.48 | RALBFv3_RS06910 | | glutamate synthase subunit beta | — | — |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.26 | Psest_3710 | | glutamate synthase small subunit family protein, proteobacterial | 0.79 | 3 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS13000 | | nitrogen regulation protein NR(I) | 0.48 | UW163_RS06705 | | glutamate synthase subunit beta | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_13865 | | nitrogen regulation protein NR(I) | 0.43 | CSW01_12025 | | glutamate synthase subunit beta | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS15680 | | chemotaxis protein CheY | 0.48 | HSERO_RS19590 | | dihydropyrimidine dehydrogenase subunit A | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS06320 | | nitrogen regulation protein NR(I) | 0.49 | RS_RS14855 | | glutamate synthase subunit beta | — | — |
| Dechlorosoma suillum PS | 0.38 | Dsui_1051 | | nitrogen regulation protein NR(I) | 0.48 | Dsui_1097 | | NADH/NADPH-dependent glutamate synthase small subunit | low | > 51 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | 0.25 | ABIE51_RS01315 | | FAD-dependent oxidoreductase | 0.77 | 12 |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | 0.26 | LRK55_RS10670 | | FAD-dependent oxidoreductase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | 0.26 | LRK54_RS10965 | | FAD-dependent oxidoreductase | low | > 59 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | 0.25 | Xcc-8004.43.1 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | 0.54 | 72 |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | 0.48 | ABCV34_RS11155 | | glutamate synthase subunit beta | low | > 48 |
| Rhodanobacter sp. FW510-T8 | 0.36 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | 0.47 | OKGIIK_15205 | | Glutamate synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | 0.25 | ABZR86_RS16800 | | FAD-dependent oxidoreductase | 0.67 | 74 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.18 | DvMF_0938 | | putative oxidoreductase (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | 0.19 | DVU2476 | gltA | glutamate synthase, small subunit (TIGR) | low | > 55 |
| Phocaeicola vulgatus CL09T03C04 | 0.31 | HMPREF1058_RS04160 | | sigma-54-dependent Fis family transcriptional regulator | 0.31 | HMPREF1058_RS06925 | | glutamate synthase subunit beta | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.31 | BT1529 | | two-component system response regulator (NCBI ptt file) | 0.32 | BT0552 | | glutamate synthase, small subunit (NCBI ptt file) | low | > 81 |
| Phocaeicola dorei CL03T12C01 | 0.31 | ABI39_RS17060 | | sigma-54-dependent Fis family transcriptional regulator | 0.32 | ABI39_RS20690 | | glutamate synthase subunit beta | low | > 72 |
| Bacteroides stercoris CC31F | 0.30 | HMPREF1181_RS04840 | | sigma-54-dependent Fis family transcriptional regulator | 0.31 | HMPREF1181_RS16050 | | glutamate synthase subunit beta | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.30 | BACOVA_04264 | | Sigma-54 interaction domain protein | 0.32 | BACOVA_03757 | | pyridine nucleotide-disulfide oxidoreductase | low | > 94 |
| Parabacteroides merdae CL09T00C40 | 0.29 | HMPREF1078_RS14380 | | sigma-54 dependent transcriptional regulator | 0.37 | HMPREF1078_RS01265 | | glutamate synthase subunit beta | low | > 61 |
Not shown: 3 genomes with orthologs for Atu1446 only; 7 genomes with orthologs for Atu3783 only