Conservation of cofitness between Atu2832 and Atu3732 in Agrobacterium fabrum C58

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2832 tRNA modification GTPase 1.0 Atu3732 hemolysin 0.56 5
Rhizobium sp. OAE497 0.52 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.73 ABIE40_RS21835 hemolysin family protein low > 107
Sinorhizobium meliloti 1021 0.51 SMc02797 tRNA modification GTPase TrmE 0.41 SMc00240 hypothetical protein — —
Azospirillum sp. SherDot2 0.38 MPMX19_02568 tRNA modification GTPase MnmE 0.41 MPMX19_06247 hypothetical protein — —
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase 0.37 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 67
Caulobacter crescentus NA1000 0.38 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase 0.37 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 66
Magnetospirillum magneticum AMB-1 0.37 AMB_RS00005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.44 AMB_RS10875 HlyC/CorC family transporter — —
Azospirillum brasilense Sp245 0.37 AZOBR_RS01805 tRNA modification GTPase TrmE 0.37 AZOBR_RS16970 hypothetical protein low > 97
Rhodopseudomonas palustris CGA009 0.37 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.53 TX73_014560 hemolysin family protein low > 86
Dinoroseobacter shibae DFL-12 0.37 Dshi_3454 tRNA modification GTPase TrmE (RefSeq) 0.59 Dshi_3672 protein of unknown function DUF21 (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS13700 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.37 A4249_RS08175 hemolysin family protein low > 48
Rhodospirillum rubrum S1H 0.33 Rru_A3624 tRNA modification GTPase TrmE (NCBI) 0.40 Rru_A0756 hypothetical protein (NCBI) — —
Bosea sp. OAE506 0.33 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.63 ABIE41_RS13905 hemolysin family protein low > 77
Phaeobacter inhibens DSM 17395 0.32 PGA1_c35110 tRNA modification GTPase MnmE 0.19 PGA1_c14050 inner membrane protein — —
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_2204 tRNA modification GTPase trmE 0.46 Ga0059261_1443 Hemolysins and related proteins containing CBS domains low > 68
Shewanella oneidensis MR-1 0.31 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) 0.34 SO2815 CBS domain protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.31 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) 0.21 Shewana3_0353 hypothetical protein (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.30 Psest_4373 tRNA modification GTPase TrmE 0.16 Psest_3136 Putative Mg2+ and Co2+ transporter CorB — —
Shewanella amazonensis SB2B 0.30 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) 0.22 Sama_3284 hemolysin, putative (RefSeq) — —
Acinetobacter radioresistens SK82 0.30 MPMX26_03070 tRNA modification GTPase MnmE 0.22 MPMX26_02321 hypothetical protein low > 36
Enterobacter asburiae PDN3 0.29 EX28DRAFT_3993 tRNA modification GTPase TrmE 0.22 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains — —
Shewanella loihica PV-4 0.29 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) 0.22 Shew_0284 hypothetical protein (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 CSW01_18340 HlyC/CorC family transporter low > 62
Dickeya dianthicola ME23 0.29 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 DZA65_RS18310 HlyC/CorC family transporter low > 75
Escherichia coli ECRC101 0.29 MCAODC_05495 tRNA modification GTPase MnmE 0.22 MCAODC_02530 paeA Polyamine export protein — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.13 PfGW456L13_760 Phosphate regulon metal ion transporter containing CBS domains — —
Enterobacter sp. TBS_079 0.29 MPMX20_04650 tRNA modification GTPase MnmE 0.22 MPMX20_00495 hypothetical protein low > 85
Escherichia coli ECRC101 0.29 OKFHMN_14985 tRNA modification GTPase MnmE 0.22 OKFHMN_12015 paeA Polyamine export protein — —
Escherichia coli ECRC99 0.29 KEDOAH_13165 tRNA modification GTPase MnmE 0.22 KEDOAH_16140 paeA Polyamine export protein — —
Escherichia coli ECRC102 0.29 NIAGMN_12740 tRNA modification GTPase MnmE 0.22 NIAGMN_09865 paeA Polyamine export protein — —
Escherichia coli ECRC98 0.29 JDDGAC_18605 tRNA modification GTPase MnmE 0.22 JDDGAC_15655 paeA Polyamine export protein — —
Variovorax sp. OAS795 0.29 ABID97_RS02655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.26 ABID97_RS21945 hemolysin family protein — —
Dickeya dianthicola 67-19 0.29 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 HGI48_RS17225 HlyC/CorC family transporter low > 71
Lysobacter sp. OAE881 0.29 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.34 ABIE51_RS06575 hemolysin family protein low > 62
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_10455 tRNA modification GTPase MnmE 0.13 AO353_09865 hypothetical protein low > 101
Escherichia coli Nissle 1917 0.29 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 ECOLIN_RS24495 hemolysin family protein low > 52
Escherichia coli ECOR38 0.29 HEPCGN_13680 tRNA modification GTPase MnmE 0.22 HEPCGN_10215 paeA Polyamine export protein low > 85
Escherichia coli ECRC62 0.29 BNILDI_04405 tRNA modification GTPase MnmE 0.22 BNILDI_07240 tlyC Polyamine export protein — —
Escherichia fergusonii Becca 0.29 EFB2_04925 tRNA modification GTPase MnmE 0.22 EFB2_04311 hypothetical protein low > 86
Pectobacterium carotovorum WPP14 0.29 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.23 HER17_RS03970 hemolysin family protein low > 75
Rahnella sp. WP5 0.29 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 EX31_RS08705 HlyC/CorC family transporter low > 89
Alteromonas macleodii MIT1002 0.29 MIT1002_04128 tRNA modification GTPase MnmE 0.15 MIT1002_01294 Hemolysin C — —
Escherichia coli ECOR27 0.29 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 NOLOHH_04280 paeA Polyamine export protein — —
Escherichia coli BW25113 0.29 b3706 trmE tRNA modification GTPase (NCBI) 0.22 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Escherichia coli BL21 0.29 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase 0.22 ECD_04089 UPF0053 family inner membrane protein low > 60
Dickeya dadantii 3937 0.29 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04346 tRNA modification GTPase MnmE 0.22 OHPLBJKB_03816 hypothetical protein — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.31 ABZR86_RS19900 hemolysin family protein low > 74
Serratia liquefaciens MT49 0.29 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.22 IAI46_01760 HlyC/CorC family transporter low > 86
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.36 Xcc-8004.3156.1 Magnesium and cobalt efflux protein CorC low > 74
Klebsiella michiganensis M5al 0.28 BWI76_RS00050 tRNA modification GTPase 0.22 BWI76_RS02765 membrane protein — —
Pantoea sp. MT58 0.28 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.20 IAI47_02710 HlyC/CorC family transporter low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.22 GFF871 Putative membrane protein low > 78
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.13 Pf1N1B4_2042 Phosphate regulon metal ion transporter containing CBS domains — —
Ralstonia solanacearum GMI1000 0.28 RS_RS00020 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.20 RS_RS11430 HlyC/CorC family transporter — —
Variovorax sp. SCN45 0.28 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE 0.28 GFF1937 Hemolysins and related proteins containing CBS domains — —
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08505 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.30 LRK54_RS12975 hemolysin family protein low > 59
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08270 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.30 LRK55_RS12675 hemolysin family protein low > 63
Ralstonia solanacearum PSI07 0.28 RPSI07_RS23950 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.20 RPSI07_RS13270 HlyC/CorC family transporter — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS09410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.20 RALBFv3_RS03950 HlyC/CorC family transporter — —
Ralstonia solanacearum UW163 0.28 UW163_RS04170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.20 UW163_RS09720 HlyC/CorC family transporter — —
Acidovorax sp. GW101-3H11 0.28 Ac3H11_4264 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.33 Ac3H11_827 Magnesium and cobalt efflux protein CorC low > 79
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS05350 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.19 ABZR87_RS15885 hemolysin family protein low > 80
Erwinia tracheiphila SCR3 0.28 LU632_RS25300 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.20 LU632_RS02100 hemolysin family protein — —
Paraburkholderia graminis OAS925 0.27 ABIE53_000332 tRNA modification GTPase 0.16 ABIE53_003593 Mg2+/Co2+ transporter CorB — —
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02320 tRNA modification GTPase trmE 0.15 H281DRAFT_06258 Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains — —
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS21670 tRNA modification GTPase TrmE 0.21 HSERO_RS08405 membrane protein — —
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0373 tRNA modification GTPase TrmE 0.15 B158DRAFT_2258 Putative Mg2+ and Co2+ transporter CorB low > 40
Marinobacter adhaerens HP15 0.27 HP15_3698 tRNA modification GTPase TrmE 0.17 HP15_755 Mg2+ and Co2+ transporter CorB — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15285 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.31 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS19830 tRNA modification GTPase TrmE 0.16 BPHYT_RS17140 magnesium and cobalt efflux protein CorC — —
Dechlorosoma suillum PS 0.27 Dsui_0837 tRNA modification GTPase TrmE 0.35 Dsui_3105 CBS domain-containing protein low > 51
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.17 QEN71_RS27300 HlyC/CorC family transporter — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_06625 tRNA modification GTPase 0.21 CA264_14350 hemolysin — —
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS20805 tRNA modification GTPase TrmE 0.31 RR42_RS28885 membrane protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF2437 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.33 GFF4625 Magnesium and cobalt efflux protein CorC — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_3509 tRNA modification GTPase TrmE 0.13 Echvi_0853 Hemolysins and related proteins containing CBS domains — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS10450 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.21 CA265_RS23615 hemolysin — —
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS13880 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.30 HMPREF1078_RS00430 hemolysin family protein low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS02725 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.21 ABZR88_RS17090 hemolysin family protein — —
Fusobacterium nucleatum SB010 0.23 HUW76_10755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.16 HUW76_09050 HlyC/CorC family transporter — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS13360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.29 HMPREF1181_RS05310 HlyC/CorC family transporter low > 56
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS05755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.31 HMPREF1058_RS12080 HlyC/CorC family transporter low > 67
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4551 putative GTPase, ThdF family (NCBI ptt file) 0.30 BT0148 putative hemolysin (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS18355 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.31 ABI39_RS04720 HlyC/CorC family transporter low > 72
Bacteroides ovatus ATCC 8483 0.22 BACOVA_05338 tRNA modification GTPase TrmE 0.31 BACOVA_01289 hypothetical protein low > 94
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1582 trmE tRNA modification GTPase TrmE 0.18 Synpcc7942_2595 hypothetical protein — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1079 trmE tRNA modification GTPase TrmE (TIGR) 0.36 DVU2148 CBS/transporter associated domain protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_0886 trmE tRNA modification GTPase TrmE (RefSeq) 0.32 DvMF_0831 protein of unknown function DUF21 (RefSeq) low > 51

Not shown: 11 genomes with orthologs for Atu2832 only; 2 genomes with orthologs for Atu3732 only