Conservation of cofitness between Atu2831 and Atu3732 in Agrobacterium fabrum C58

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2831 glucose inhibited division protein A 1.0 Atu3732 hemolysin 0.64 3
Sinorhizobium meliloti 1021 0.71 SMc02798 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 0.41 SMc00240 hypothetical protein — —
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.37 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 67
Caulobacter crescentus NA1000 0.58 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.37 CCNA_00369 magnesium and cobalt efflux protein corC-like protein low > 66
Bosea sp. OAE506 0.58 ABIE41_RS04685 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.63 ABIE41_RS13905 hemolysin family protein — —
Rhodopseudomonas palustris CGA009 0.58 TX73_001530 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.53 TX73_014560 hemolysin family protein low > 86
Magnetospirillum magneticum AMB-1 0.57 AMB_RS00010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.44 AMB_RS10875 HlyC/CorC family transporter low > 64
Azospirillum sp. SherDot2 0.56 MPMX19_02569 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.41 MPMX19_06247 hypothetical protein — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS01810 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.37 AZOBR_RS16970 hypothetical protein low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS13705 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.37 A4249_RS08175 hemolysin family protein low > 48
Phaeobacter inhibens DSM 17395 0.54 PGA1_c35100 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.19 PGA1_c14050 inner membrane protein — —
Rhodospirillum rubrum S1H 0.53 Rru_A3625 Glucose-inhibited division protein A subfamily (NCBI) 0.40 Rru_A0756 hypothetical protein (NCBI) — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_3455 glucose inhibited division protein A (RefSeq) 0.59 Dshi_3672 protein of unknown function DUF21 (RefSeq) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_04124 Glucose-inhibited division protein A 0.15 MIT1002_01294 Hemolysin C low > 70
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_0377 glucose-inhibited division protein A 0.15 B158DRAFT_2258 Putative Mg2+ and Co2+ transporter CorB low > 40
Escherichia coli BL21 0.47 ECD_03625 5-methylaminomethyl-2-thiouridine modification at tRNA U34 0.22 ECD_04089 UPF0053 family inner membrane protein low > 60
Marinobacter adhaerens HP15 0.47 HP15_3690 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.17 HP15_755 Mg2+ and Co2+ transporter CorB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_04312 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.22 OHPLBJKB_03816 hypothetical protein — —
Escherichia coli BW25113 0.47 b3741 gidA glucose-inhibited division protein A (NCBI) 0.22 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECOR27 0.47 NOLOHH_06920 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 NOLOHH_04280 paeA Polyamine export protein — —
Escherichia coli Nissle 1917 0.47 ECOLIN_RS21515 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 ECOLIN_RS24495 hemolysin family protein low > 52
Dickeya dianthicola 67-19 0.47 HGI48_RS21380 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 HGI48_RS17225 HlyC/CorC family transporter low > 71
Escherichia coli ECRC62 0.47 BNILDI_04605 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 BNILDI_07240 tlyC Polyamine export protein — —
Escherichia fergusonii Becca 0.47 EFB2_04892 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.22 EFB2_04311 hypothetical protein low > 86
Escherichia coli ECOR38 0.47 HEPCGN_13500 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 HEPCGN_10215 paeA Polyamine export protein low > 85
Escherichia coli ECRC101 0.46 OKFHMN_14785 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 OKFHMN_12015 paeA Polyamine export protein — —
Escherichia coli ECRC98 0.46 JDDGAC_18405 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 JDDGAC_15655 paeA Polyamine export protein — —
Escherichia coli ECRC99 0.46 KEDOAH_13365 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 KEDOAH_16140 paeA Polyamine export protein — —
Escherichia coli ECRC102 0.46 NIAGMN_12540 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 NIAGMN_09865 paeA Polyamine export protein — —
Escherichia coli ECRC101 0.46 MCAODC_05290 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 MCAODC_02530 paeA Polyamine export protein — —
Dickeya dianthicola ME23 0.46 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 DZA65_RS18310 HlyC/CorC family transporter low > 75
Rahnella sp. WP5 0.46 EX31_RS06140 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 EX31_RS08705 HlyC/CorC family transporter low > 89
Klebsiella michiganensis M5al 0.46 BWI76_RS00230 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.22 BWI76_RS02765 membrane protein — —
Dickeya dadantii 3937 0.46 DDA3937_RS21605 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF1716 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.22 GFF871 Putative membrane protein low > 78
Pectobacterium carotovorum WPP14 0.46 HER17_RS21600 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.23 HER17_RS03970 hemolysin family protein low > 75
Enterobacter sp. TBS_079 0.46 MPMX20_04626 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.22 MPMX20_00495 hypothetical protein low > 85
Serratia liquefaciens MT49 0.46 IAI46_25110 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 IAI46_01760 HlyC/CorC family transporter low > 86
Enterobacter asburiae PDN3 0.46 EX28DRAFT_4017 glucose-inhibited division protein A 0.22 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains — —
Lysobacter sp. OAE881 0.46 ABIE51_RS01205 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.34 ABIE51_RS06575 hemolysin family protein low > 62
Shewanella loihica PV-4 0.46 Shew_3856 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.22 Shew_0284 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.45 Shewana3_0002 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.21 Shewana3_0353 hypothetical protein (RefSeq) low > 73
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS29345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.17 QEN71_RS27300 HlyC/CorC family transporter — —
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_10445 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.13 AO353_09865 hypothetical protein low > 101
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.488.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.36 Xcc-8004.3156.1 Magnesium and cobalt efflux protein CorC low > 74
Shewanella oneidensis MR-1 0.45 SO4758 gidA glucose-inhibited division protein A (NCBI ptt file) 0.34 SO2815 CBS domain protein (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1934 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.13 Pf1N1B4_2042 Phosphate regulon metal ion transporter containing CBS domains — —
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS15760 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 ABZR86_RS19900 hemolysin family protein low > 74
Variovorax sp. OAS795 0.45 ABID97_RS02905 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.26 ABID97_RS21945 hemolysin family protein — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_14055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.22 CSW01_18340 HlyC/CorC family transporter low > 62
Dechlorosoma suillum PS 0.45 Dsui_0846 glucose-inhibited division protein A 0.35 Dsui_3105 CBS domain-containing protein low > 51
Pseudomonas stutzeri RCH2 0.45 Psest_4365 glucose-inhibited division protein A 0.16 Psest_3136 Putative Mg2+ and Co2+ transporter CorB — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_671 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.13 PfGW456L13_760 Phosphate regulon metal ion transporter containing CBS domains — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS09830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 LRK55_RS12675 hemolysin family protein low > 63
Shewanella amazonensis SB2B 0.45 Sama_3655 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.22 Sama_3284 hemolysin, putative (RefSeq) — —
Erwinia tracheiphila SCR3 0.45 LU632_RS24815 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.20 LU632_RS02100 hemolysin family protein — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS10190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 LRK54_RS12975 hemolysin family protein low > 59
Paraburkholderia graminis OAS925 0.45 ABIE53_000264 tRNA uridine 5-carboxymethylaminomethyl modification enzyme 0.16 ABIE53_003593 Mg2+/Co2+ transporter CorB — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS23965 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.21 HSERO_RS08405 membrane protein — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02385 tRNA uridine 5-carboxymethylaminomethyl modification enzyme 0.15 H281DRAFT_06258 Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS08865 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.20 RALBFv3_RS03950 HlyC/CorC family transporter — —
Ralstonia solanacearum UW163 0.45 UW163_RS04745 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.20 UW163_RS09720 HlyC/CorC family transporter — —
Pantoea sp. MT58 0.45 IAI47_00300 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.20 IAI47_02710 HlyC/CorC family transporter low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF2018 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.33 GFF4625 Magnesium and cobalt efflux protein CorC low > 90
Variovorax sp. SCN45 0.45 GFF3336 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG 0.28 GFF1937 Hemolysins and related proteins containing CBS domains — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_4956 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.33 Ac3H11_827 Magnesium and cobalt efflux protein CorC low > 79
Acinetobacter radioresistens SK82 0.45 MPMX26_01147 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.22 MPMX26_02321 hypothetical protein low > 36
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS19440 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.16 BPHYT_RS17140 magnesium and cobalt efflux protein CorC — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS08410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.20 RPSI07_RS13270 HlyC/CorC family transporter — —
Ralstonia solanacearum GMI1000 0.44 RS_RS16675 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.20 RS_RS11430 HlyC/CorC family transporter — —
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS04125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.19 ABZR87_RS15885 hemolysin family protein low > 80
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_2205 glucose-inhibited division protein A 0.46 Ga0059261_1443 Hemolysins and related proteins containing CBS domains low > 68
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_13725 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS20215 tRNA uridine 5-carboxymethylaminomethyl modification protein 0.31 RR42_RS28885 membrane protein — —
Desulfovibrio vulgaris Miyazaki F 0.42 DvMF_0551 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.32 DvMF_0831 protein of unknown function DUF21 (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU1828 gidA glucose inhibited division protein A (TIGR) 0.36 DVU2148 CBS/transporter associated domain protein (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_1059 glucose-inhibited division protein A 0.13 Echvi_0853 Hemolysins and related proteins containing CBS domains — —
Fusobacterium nucleatum SB010 0.40 HUW76_10170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.16 HUW76_09050 HlyC/CorC family transporter low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS20615 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.21 ABZR88_RS17090 hemolysin family protein — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT3268 glucose-inhibited division protein A (NCBI ptt file) 0.30 BT0148 putative hemolysin (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS21200 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.21 CA265_RS23615 hemolysin — —
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS02105 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.29 HMPREF1181_RS05310 HlyC/CorC family transporter low > 56
Bacteroides ovatus ATCC 8483 0.38 BACOVA_01367 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.31 BACOVA_01289 hypothetical protein low > 94
Phocaeicola vulgatus CL09T03C04 0.38 HMPREF1058_RS11535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 HMPREF1058_RS12080 HlyC/CorC family transporter low > 67
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS05405 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.31 ABI39_RS04720 HlyC/CorC family transporter low > 72
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_2423 gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.18 Synpcc7942_2595 hypothetical protein — —
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS06305 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.30 HMPREF1078_RS00430 hemolysin family protein low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_17285 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.21 CA264_14350 hemolysin — —

Not shown: 11 genomes with orthologs for Atu2831 only; 3 genomes with orthologs for Atu3732 only