Conservation of cofitness between Atu3298 and Atu2790 in Agrobacterium fabrum C58

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3298 C4-dicarboxylate transporter DctA 1.0 Atu2790 3-isopropylmalate dehydratase, small subunit 0.27 20
Sinorhizobium meliloti 1021 0.80 SM_b20611 C4-dicarboxylate transporter DctA 0.88 SMc03795 isopropylmalate isomerase small subunit low > 103
Rhizobium sp. OAE497 0.78 ABIE40_RS26345 dicarboxylate/amino acid:cation symporter 0.84 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit low > 107
Rhodospirillum rubrum S1H 0.75 Rru_A1437 Sodium:dicarboxylate symporter (NCBI) 0.74 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI) low > 58
Castellaniella sp019104865 MT123 0.73 ABCV34_RS02715 dicarboxylate/amino acid:cation symporter 0.52 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit low > 48
Xanthobacter sp. DMC5 0.73 GFF3677 C4-dicarboxylate transport protein 0.74 GFF1843 3-isopropylmalate dehydratase small subunit 1
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.1034.1 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate 0.55 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 74
Sphingobium sp. HT1-2 0.69 GFF161 Na+/H+-dicarboxylate symporter 0.47 GFF2628 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 95
Brevundimonas sp. GW460-12-10-14-LB2 0.68 A4249_RS04425 dicarboxylate/amino acid:cation symporter 0.41 A4249_RS10000 3-isopropylmalate dehydratase small subunit low > 48
Acinetobacter baumannii LAC-4 0.68 RR41_RS06660 dicarboxylate/amino acid:cation symporter 0.58 RR41_RS16895 3-isopropylmalate dehydratase small subunit low > 55
Acidovorax sp. GW101-3H11 0.65 Ac3H11_719 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate 0.53 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 79
Sphingomonas koreensis DSMZ 15582 0.64 Ga0059261_0617 Na+/H+-dicarboxylate symporters 0.42 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit
Escherichia coli ECOR38 0.61 HEPCGN_15100 dctA C4-dicarboxylate transporter DctC 0.50 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_00174 Aerobic C4-dicarboxylate transport protein 0.50 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit low > 74
Escherichia coli Nissle 1917 0.61 ECOLIN_RS20180 C4-dicarboxylate transporter DctC 0.50 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit low > 55
Escherichia coli ECOR27 0.61 NOLOHH_08160 dctA C4-dicarboxylate transporter DctC 0.50 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit low > 76
Escherichia coli BW25113 0.61 b3528 dctA C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) 0.50 b0071 leuD isopropylmalate isomerase small subunit (NCBI) low > 76
Escherichia coli ECRC62 0.61 BNILDI_03395 dctA C4-dicarboxylate transporter DctC 0.50 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit low > 75
Escherichia coli BL21 0.61 ECD_03376 C4-dicarboxylic acid, orotate and citrate transporter 0.50 ECD_00073 3-isopropylmalate dehydratase small subunit low > 61
Escherichia fergusonii Becca 0.61 EFB2_00280 Aerobic C4-dicarboxylate transport protein 0.50 EFB2_03974 3-isopropylmalate dehydratase small subunit low > 86
Escherichia coli ECRC98 0.61 JDDGAC_19825 dctA C4-dicarboxylate transporter DctC 0.49 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit low > 87
Escherichia coli ECRC100 0.61 OKFHMN_16195 dctA C4-dicarboxylate transporter DctC 0.49 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit low > 79
Escherichia coli ECRC99 0.61 KEDOAH_11955 dctA C4-dicarboxylate transporter DctC 0.49 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC101 0.61 MCAODC_06710 dctA C4-dicarboxylate transporter DctC 0.49 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit low > 88
Pseudomonas lactucae CFBP13502 0.61 GEMAOFIL_04444 C4-dicarboxylate transport protein 2 0.53 GEMAOFIL_03947 3-isopropylmalate dehydratase small subunit low > 93
Escherichia coli ECRC102 0.61 NIAGMN_13960 dctA C4-dicarboxylate transporter DctC 0.49 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit low > 80
Rahnella sp. WP5 0.61 EX31_RS05445 dicarboxylate/amino acid:cation symporter 0.50 EX31_RS03695 3-isopropylmalate dehydratase small subunit low > 89
Pseudomonas fluorescens SBW25 0.61 PFLU_RS23115 dicarboxylate/amino acid:cation symporter 0.53 PFLU_RS20575 3-isopropylmalate dehydratase small subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS23115 dicarboxylate/amino acid:cation symporter 0.53 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.22 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_3707 Sodium:dicarboxylate symporter 0.56 Psyr_1984 3-isopropylmalate dehydratase, small subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_3707 Sodium:dicarboxylate symporter 0.56 Psyr_1984 3-isopropylmalate dehydratase, small subunit low > 86
Pseudomonas simiae WCS417 0.60 PS417_21500 C4 dicarboxylate transporter DctA (from data) 0.54 PS417_18595 3-isopropylmalate dehydratase low > 88
Pseudomonas sp. DMC3 0.60 GFF4837 C4-dicarboxylate transport protein 2 0.55 GFF786 3-isopropylmalate dehydratase small subunit 1 low > 89
Pseudomonas aeruginosa PA14 0.60 IKLFDK_05485 C4-dicarboxylate transporter DctC 0.56 IKLFDK_15875 3-isopropylmalate dehydratase small subunit low > 100
Ralstonia solanacearum GMI1000 0.60 RS_RS01625 C4-dicarboxylate transporter 1 0.54 RS_RS09995 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum PSI07 0.60 RPSI07_RS22530 dicarboxylate/amino acid:cation symporter 0.54 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit
Acinetobacter radioresistens SK82 0.59 MPMX26_02024 C4-dicarboxylate transport protein 2 0.57 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 low > 36
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_3487 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate 0.56 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas putida KT2440 0.59 PP_1188 C4-dicarboxylate transport protein 0.56 PP_1986 3-isopropylmalate dehydratase small subunit low > 96
Dickeya dianthicola ME23 0.59 DZA65_RS21850 dicarboxylate/amino acid:cation symporter 0.53 DZA65_RS19215 3-isopropylmalate dehydratase small subunit low > 75
Ralstonia solanacearum UW163 0.59 UW163_RS02795 dicarboxylate/amino acid:cation symporter 0.54 UW163_RS11110 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS10785 dicarboxylate/amino acid:cation symporter 0.54 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit low > 76
Klebsiella michiganensis M5al 0.59 BWI76_RS26760 C4-dicarboxylate transport protein DctA (from data) 0.49 BWI76_RS04665 3-isopropylmalate dehydratase small subunit low > 92
Dickeya dianthicola 67-19 0.59 HGI48_RS20835 dicarboxylate/amino acid:cation symporter 0.53 HGI48_RS18070 3-isopropylmalate dehydratase small subunit low > 71
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_5707 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate 0.55 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 103
Serratia liquefaciens MT49 0.59 IAI46_00550 dicarboxylate/amino acid:cation symporter 0.51 IAI46_03340 3-isopropylmalate dehydratase small subunit low > 86
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS06625 dicarboxylate/amino acid:cation symporter 0.54 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit low > 80
Pseudomonas sp. BP01 0.59 JOY50_RS01965 dicarboxylate/amino acid:cation symporter 0.56 JOY50_RS16625 leuD 3-isopropylmalate dehydratase small subunit low > 84
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_2016 C4-dicarboxylate transporter (from data) 0.55 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 87
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS01365 dicarboxylate/amino acid:cation symporter 0.56 QEN71_RS17615 3-isopropylmalate dehydratase small subunit low > 153
Pseudomonas sp. SVBP6 0.59 COO64_RS07410 dicarboxylate/amino acid:cation symporter 0.56 COO64_RS05660 leuD 3-isopropylmalate dehydratase small subunit low > 93
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_18980 sodium:C4-dicarboxylate symporter (dctA) (from data) 0.55 AO356_21405 3-isopropylmalate dehydratase 0.18 76
Paraburkholderia graminis OAS925 0.59 ABIE53_000646 aerobic C4-dicarboxylate transport protein 0.55 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit low > 113
Pseudomonas sp. RS175 0.59 PFR28_03241 C4-dicarboxylate transport protein 2 0.55 PFR28_02823 3-isopropylmalate dehydratase small subunit 1 low > 88
Enterobacter sp. TBS_079 0.59 MPMX20_04413 Aerobic C4-dicarboxylate transport protein 0.49 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 low > 85
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS02510 C4-dicarboxylate ABC transporter 0.56 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit low > 109
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_02039 aerobic C4-dicarboxylate transport protein 0.56 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit low > 103
Pantoea agglomerans CFBP13505 P0401 0.59 PagCFBP13505_RS15580 dicarboxylate/amino acid:cation symporter 0.50 PagCFBP13505_RS12985 3-isopropylmalate dehydratase small subunit low > 74
Erwinia tracheiphila SCR3 0.58 LU632_RS00330 dicarboxylate/amino acid:cation symporter 0.48 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit low > 74
Pseudomonas sp. S08-1 0.58 OH686_20585 Na+/H+-dicarboxylate symporter 0.55 OH686_04475 3-isopropylmalate dehydratase small subunit low > 80
Erwinia tracheiphila HP pepo 2.2 0.58 IJEDHG_10165 dctA C4-dicarboxylate transport protein 0.48 IJEDHG_06010 leuD 3-isopropylmalate dehydratase small subunit low > 61
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS01695 C4-dicarboxylate transporter 0.53 RR42_RS24180 3-isopropylmalate dehydratase low > 128
Variovorax sp. OAS795 0.58 ABID97_RS26560 dicarboxylate/amino acid:cation symporter 0.56 ABID97_RS08460 3-isopropylmalate dehydratase small subunit
Klebsiella pneumoniae MKP103 0.58 KDGMDA_07500 C4-dicarboxylate transport protein 0.52 KDGMDA_12895 3-isopropylmalate dehydratase small subunit low > 95
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4049 Na+/H+-dicarboxylate symporters 0.50 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit low > 76
Pectobacterium carotovorum WPP14 0.58 HER17_RS00400 dicarboxylate/amino acid:cation symporter 0.51 HER17_RS03070 3-isopropylmalate dehydratase small subunit low > 75
Pantoea sp. MT58 0.58 IAI47_18585 dicarboxylate/amino acid:cation symporter 0.50 IAI47_16015 3-isopropylmalate dehydratase small subunit low > 76
Erwinia amylovora T8 0.57 OLJFJH_04805 C4-dicarboxylate transport protein 0.47 OLJFJH_01300 3-isopropylmalate dehydratase small subunit low > 58
Dickeya dadantii 3937 0.57 DDA3937_RS00555 dicarboxylate/amino acid:cation symporter 0.52 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF495 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate 0.50 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 78
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_02800 C4-dicarboxylate transporter 0.55 AO353_20625 3-isopropylmalate dehydratase low > 101
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS13105 C4-dicarboxylate ABC transporter 0.53 HSERO_RS16505 3-isopropylmalate dehydratase small subunit 0.33 42
Dechlorosoma suillum PS 0.57 Dsui_3158 Na+/H+ dicarboxylate symporter 0.56 Dsui_3199 3-isopropylmalate dehydratase, small subunit
Variovorax sp. SCN45 0.57 GFF1694 Na+/H+-dicarboxylate symporter 0.55 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 127
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS08515 dicarboxylate/amino acid:cation symporter 0.47 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.44 41
Azospirillum sp. SherDot2 0.56 MPMX19_04253 Aerobic C4-dicarboxylate transport protein 0.75 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1 low > 112
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_00664 C4-dicarboxylate transport protein 0.61 CCNA_00195 3-isopropylmalate dehydratase small subunit low > 67
Caulobacter crescentus NA1000 0.56 CCNA_00664 C4-dicarboxylate transport protein 0.61 CCNA_00195 3-isopropylmalate dehydratase small subunit low > 66
Azospirillum brasilense Sp245 0.54 AZOBR_RS21140 C4-dicarboxylate ABC transporter 0.74 AZOBR_RS14135 isopropylmalate isomerase low > 97
Rhodopseudomonas palustris CGA009 0.54 TX73_012660 dicarboxylate/amino acid:cation symporter 0.77 TX73_001215 3-isopropylmalate dehydratase small subunit
Pedobacter sp. GW460-11-11-14-LB5 0.47 CA265_RS15560 glutamate/aspartate:proton symporter GltP 0.44 CA265_RS15840 3-isopropylmalate dehydratase small subunit low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.45 ABZR88_RS20325 C4-dicarboxylate transporter DctA 0.42 ABZR88_RS11600 3-isopropylmalate dehydratase small subunit
Mycobacterium tuberculosis H37Rv 0.35 Rv2443 Probable C4-dicarboxylate-transport transmembrane protein DctA 0.34 Rv2987c Probable 3-isopropylmalate dehydratase (small subunit) LeuD (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_01055 dicarboxylate/amino acid:cation symporter 0.45 CA264_09440 3-isopropylmalate dehydratase small subunit low > 74
Shewanella oneidensis MR-1 0.27 SO0922 proton/glutamate symporter (NCBI ptt file) 0.49 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_3362 sodium:dicarboxylate symporter (RefSeq) 0.49 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) low > 73
Shewanella amazonensis SB2B 0.27 Sama_2768 proton/glutamate symporter (RefSeq) 0.47 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) low > 62
Shewanella loihica PV-4 0.27 Shew_0743 sodium:dicarboxylate symporter (RefSeq) 0.48 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) low > 60
Pseudomonas stutzeri RCH2 0.24 Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) 0.56 Psest_2590 3-isopropylmalate dehydratase, small subunit low > 67
Cellulophaga baltica 18 0.22 M666_RS15550 dicarboxylate/amino acid:cation symporter 0.40 M666_RS15055 3-isopropylmalate dehydratase small subunit low > 67
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_2215 Na+/H+-dicarboxylate symporters 0.54 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit low > 40
Alteromonas macleodii MIT1002 0.20 MIT1002_01702 Glutamate-aspartate carrier protein 0.46 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 low > 70
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_1519 Na+/H+-dicarboxylate symporters 0.42 Echvi_2060 3-isopropylmalate dehydratase, small subunit
Vibrio cholerae E7946 ATCC 55056 0.19 CSW01_05920 dicarboxylate/amino acid:cation symporter 0.50 CSW01_12610 3-isopropylmalate dehydratase small subunit low > 62
Marinobacter adhaerens HP15 0.17 HP15_2676 proton/sodium-glutamate symport protein 0.58 HP15_1833 isopropylmalate isomerase small subunit low > 73
Methylophilus sp. DMC18 0.16 GFF2299 Proton/sodium-glutamate symport protein 0.55 GFF647 3-isopropylmalate dehydratase small subunit 1
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_06560 gltP dicarboxylate/amino acid:cation symporter 0.43 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit low > 52
Rhodanobacter sp000427505 FW510-R12 0.13 LRK53_RS09455 dicarboxylate/amino acid:cation symporter 0.44 LRK53_RS03105 3-isopropylmalate dehydratase small subunit low > 59
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS00700 dicarboxylate/amino acid:cation symporter 0.44 LRK54_RS10330 3-isopropylmalate dehydratase small subunit low > 59
Rhodanobacter denitrificans MT42 0.13 LRK55_RS00475 dicarboxylate/amino acid:cation symporter 0.44 LRK55_RS09970 3-isopropylmalate dehydratase small subunit low > 63

Not shown: 0 genomes with orthologs for Atu3298 only; 14 genomes with orthologs for Atu2790 only