| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu1446 | | two component response regulator | 1.0 | Atu2790 | | 3-isopropylmalate dehydratase, small subunit | 0.46 | 17 |
| Rhizobium sp. OAE497 | 0.95 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | 0.84 | ABIE40_RS19040 | | 3-isopropylmalate dehydratase small subunit | 0.85 | 30 |
| Sinorhizobium meliloti 1021 | 0.93 | SMc01043 | | nitrogen assimilation regulatory protein | 0.88 | SMc03795 | | isopropylmalate isomerase small subunit | 0.35 | 90 |
| Rhodopseudomonas palustris CGA009 | 0.75 | TX73_013420 | | nitrogen regulation protein NR(I) | 0.77 | TX73_001215 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Bosea sp. OAE506 | 0.73 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | 0.78 | ABIE41_RS11640 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Magnetospirillum magneticum AMB-1 | 0.70 | AMB_RS11950 | | nitrogen regulation protein NR(I) | 0.74 | AMB_RS20565 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Azospirillum sp. SherDot2 | 0.69 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | 0.75 | MPMX19_00606 | | 3-isopropylmalate dehydratase small subunit 1 | — | — |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS14430 | | chemotaxis protein CheY | 0.74 | AZOBR_RS14135 | | isopropylmalate isomerase | 0.25 | 94 |
| Rhodospirillum rubrum S1H | 0.66 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | 0.74 | Rru_A1190 | | 3-isopropylmalate dehydratase small subunit region (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.56 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | 0.61 | CCNA_00195 | | 3-isopropylmalate dehydratase small subunit | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.56 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | 0.61 | CCNA_00195 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.49 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | 0.42 | Ga0059261_4225 | | 3-isopropylmalate dehydratase, small subunit | low | > 68 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_1574 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.77 | Dshi_0083 | | 3-isopropylmalate dehydratase, small subunit (RefSeq) | low | > 64 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | 0.50 | ECOLIN_RS00385 | | 3-isopropylmalate dehydratase small subunit | low | > 52 |
| Escherichia fergusonii Becca | 0.42 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | 0.50 | EFB2_03974 | | 3-isopropylmalate dehydratase small subunit | low | > 86 |
| Escherichia coli BW25113 | 0.42 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | 0.50 | b0071 | leuD | isopropylmalate isomerase small subunit (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | 0.50 | NOLOHH_03075 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 57 |
| Escherichia coli ECRC101 | 0.42 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | 0.49 | OKFHMN_10730 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | 0.49 | NIAGMN_08580 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC101 | 0.42 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | 0.49 | MCAODC_01245 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli BL21 | 0.42 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | 0.50 | ECD_00073 | | 3-isopropylmalate dehydratase small subunit | low | > 60 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | 0.49 | JDDGAC_14325 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | 0.49 | KEDOAH_17425 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC62 | 0.42 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | 0.50 | BNILDI_08535 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | 0.50 | OHPLBJKB_03586 | | 3-isopropylmalate dehydratase small subunit | 0.32 | 52 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | 0.50 | EX28DRAFT_3667 | | 3-isopropylmalate dehydratase, small subunit | low | > 76 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | 0.49 | MPMX20_00766 | | 3-isopropylmalate dehydratase small subunit 1 | 0.61 | 33 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF2220 | | Nitrogen regulation protein NR(I) | 0.50 | GFF167 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | low | > 78 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.49 | BWI76_RS04665 | | 3-isopropylmalate dehydratase small subunit | 0.48 | 50 |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | 0.50 | HEPCGN_08710 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 85 |
| Variovorax sp. SCN45 | 0.41 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | 0.55 | GFF3889 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS21440 | | nitrogen regulation protein NR(I) | 0.51 | HER17_RS03070 | | 3-isopropylmalate dehydratase small subunit | low | > 75 |
| Pantoea sp. MT58 | 0.41 | IAI47_00450 | | nitrogen regulation protein NR(I) | 0.50 | IAI47_16015 | | 3-isopropylmalate dehydratase small subunit | 0.79 | 27 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_24960 | | nitrogen regulation protein NR(I) | 0.51 | IAI46_03340 | | 3-isopropylmalate dehydratase small subunit | low | > 86 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | 0.56 | ABID97_RS08460 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | 0.56 | QEN71_RS17615 | | 3-isopropylmalate dehydratase small subunit | 0.33 | 95 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | 0.57 | MPMX26_00346 | | 3-isopropylmalate dehydratase small subunit 1 | low | > 36 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | 0.53 | HGI48_RS18070 | | 3-isopropylmalate dehydratase small subunit | 0.63 | 65 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | 0.53 | DZA65_RS19215 | | 3-isopropylmalate dehydratase small subunit | 0.67 | 50 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | 0.54 | RPSI07_RS14700 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.49 | Shewana3_3758 | leuD | isopropylmalate isomerase small subunit (RefSeq) | 0.77 | 17 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | 0.52 | DDA3937_RS18130 | | 3-isopropylmalate dehydratase small subunit | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS12980 | | chemotaxis protein CheY | 0.53 | RR42_RS24180 | | 3-isopropylmalate dehydratase | low | > 128 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c14790 | | nitrogen regulation protein NtrC | 0.71 | PGA1_c29790 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.48 | Shew_3469 | | isopropylmalate isomerase small subunit (RefSeq) | low | > 60 |
| Rahnella sp. WP5 | 0.40 | EX31_RS15880 | | nitrogen regulation protein NR(I) | 0.50 | EX31_RS03695 | | 3-isopropylmalate dehydratase small subunit | 0.75 | 44 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | 0.55 | ABIE53_004803 | | 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit | 0.46 | 19 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_425 | | two-component response regulator NtrC | 0.58 | HP15_1833 | | isopropylmalate isomerase small subunit | low | > 73 |
| Shewanella oneidensis MR-1 | 0.40 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | 0.49 | SO4233 | leuD | 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) | 0.64 | 28 |
| Shewanella amazonensis SB2B | 0.40 | Sama_3427 | | response regulator receiver protein (RefSeq) | 0.47 | Sama_0338 | leuD | isopropylmalate isomerase small subunit (RefSeq) | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.55 | Pf6N2E2_64 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | 0.46 | 45 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | 0.56 | H281DRAFT_06073 | | 3-isopropylmalate dehydratase, small subunit | low | > 103 |
| Pseudomonas simiae WCS417 | 0.40 | PS417_01635 | | nitrogen regulation protein NR(I) | 0.54 | PS417_18595 | | 3-isopropylmalate dehydratase | low | > 88 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS12935 | | chemotaxis protein CheY | 0.56 | BPHYT_RS33905 | | 3-isopropylmalate dehydratase small subunit | 0.50 | 50 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.55 | AO356_21405 | | 3-isopropylmalate dehydratase | 0.36 | 57 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | 0.54 | ABZR87_RS14535 | | 3-isopropylmalate dehydratase small subunit | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.53 | PFLU_RS20575 | | 3-isopropylmalate dehydratase small subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.53 | PFLU_RS20575 | | 3-isopropylmalate dehydratase small subunit | low | > 109 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | 0.55 | PFR28_02823 | | 3-isopropylmalate dehydratase small subunit 1 | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.56 | Psyr_1984 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.56 | Pf1N1B4_14 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | 0.48 | LU632_RS02865 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.56 | Psyr_1984 | | 3-isopropylmalate dehydratase, small subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_12145 | | nitrogen regulation protein NR(I) | 0.55 | AO353_20625 | | 3-isopropylmalate dehydratase | 0.44 | 25 |
| Alteromonas macleodii MIT1002 | 0.39 | MIT1002_03186 | | Nitrogen regulation protein NR(I) | 0.46 | MIT1002_00946 | | 3-isopropylmalate dehydratase small subunit 1 | 0.78 | 24 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_10640 | | nitrogen regulation protein NR(I) | 0.55 | OH686_04475 | | 3-isopropylmalate dehydratase small subunit | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | 0.55 | PfGW456L13_3947 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | low | > 87 |
| Pseudomonas putida KT2440 | 0.39 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.56 | PP_1986 | | 3-isopropylmalate dehydratase small subunit | 0.33 | 26 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF5269 | | Nitrogen regulation protein NR(I) | 0.55 | GFF3361 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | low | > 90 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS13000 | | nitrogen regulation protein NR(I) | 0.54 | UW163_RS11110 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.56 | Psest_2590 | | 3-isopropylmalate dehydratase, small subunit | 0.34 | 60 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | 0.54 | RALBFv3_RS02615 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS15680 | | chemotaxis protein CheY | 0.53 | HSERO_RS16505 | | 3-isopropylmalate dehydratase small subunit | 0.46 | 16 |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_13865 | | nitrogen regulation protein NR(I) | 0.50 | CSW01_12610 | | 3-isopropylmalate dehydratase small subunit | low | > 62 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS06320 | | nitrogen regulation protein NR(I) | 0.54 | RS_RS09995 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Dechlorosoma suillum PS | 0.38 | Dsui_1051 | | nitrogen regulation protein NR(I) | 0.56 | Dsui_3199 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | 0.44 | LRK55_RS09970 | | 3-isopropylmalate dehydratase small subunit | low | > 63 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | 0.42 | ABIE51_RS17580 | | 3-isopropylmalate dehydratase small subunit | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | 0.44 | LRK54_RS10330 | | 3-isopropylmalate dehydratase small subunit | low | > 59 |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | 0.52 | ABCV34_RS04285 | | 3-isopropylmalate dehydratase small subunit | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | 0.55 | Xcc-8004.1050.1 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | 0.60 | 15 |
| Rhodanobacter sp. FW510-T8 | 0.36 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | 0.43 | OKGIIK_13590 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | 0.47 | ABZR86_RS15955 | | 3-isopropylmalate dehydratase small subunit | 0.68 | 57 |
| Phocaeicola vulgatus CL09T03C04 | 0.31 | HMPREF1058_RS04160 | | sigma-54-dependent Fis family transcriptional regulator | 0.40 | HMPREF1058_RS14555 | | 3-isopropylmalate dehydratase small subunit | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.31 | BT1529 | | two-component system response regulator (NCBI ptt file) | 0.38 | BT1859 | | 3-isopropylmalate dehydratase small subunit (NCBI ptt file) | low | > 81 |
| Phocaeicola dorei CL03T12C01 | 0.31 | ABI39_RS17060 | | sigma-54-dependent Fis family transcriptional regulator | 0.40 | ABI39_RS10205 | | 3-isopropylmalate dehydratase small subunit | low | > 72 |
| Bacteroides stercoris CC31F | 0.30 | HMPREF1181_RS04840 | | sigma-54-dependent Fis family transcriptional regulator | 0.40 | HMPREF1181_RS14140 | | 3-isopropylmalate dehydratase small subunit | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.30 | BACOVA_04264 | | Sigma-54 interaction domain protein | 0.39 | BACOVA_04602 | | 3-isopropylmalate dehydratase, small subunit | low | > 94 |
| Parabacteroides merdae CL09T00C40 | 0.29 | HMPREF1078_RS14380 | | sigma-54 dependent transcriptional regulator | 0.39 | HMPREF1078_RS16655 | | 3-isopropylmalate dehydratase small subunit | low | > 61 |
Not shown: 3 genomes with orthologs for Atu1446 only; 9 genomes with orthologs for Atu2790 only