Conservation of cofitness between ABZR87_RS01605 and ABZR87_RS02640 in Ralstonia sp. UNC404CL21Col

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS01605 shikimate dehydrogenase 1.0 ABZR87_RS02640 diaminopimelate decarboxylase 0.63 19
Ralstonia solanacearum PSI07 0.87 RPSI07_RS11300 shikimate dehydrogenase 0.91 RPSI07_RS10250 diaminopimelate decarboxylase — —
Ralstonia solanacearum GMI1000 0.84 RS_RS13890 shikimate dehydrogenase 0.91 RS_RS14930 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.82 UW163_RS07680 shikimate dehydrogenase 0.92 UW163_RS06625 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.82 RALBFv3_RS05945 shikimate dehydrogenase 0.92 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS27130 shikimate dehydrogenase 0.70 QEN71_RS28080 diaminopimelate decarboxylase 0.70 35
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS16975 shikimate 5-dehydrogenase 0.69 BPHYT_RS17930 diaminopimelate decarboxylase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.67 H281DRAFT_05606 diaminopimelate decarboxylase — —
Paraburkholderia graminis OAS925 0.50 ABIE53_003560 shikimate dehydrogenase 0.68 ABIE53_003749 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS17645 shikimate dehydrogenase 0.72 RR42_RS19050 diaminopimelate decarboxylase — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS01990 shikimate 5-dehydrogenase 0.59 HSERO_RS00950 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.57 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.57 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.78 23
Pseudomonas sp. RS175 0.43 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.57 PFR28_04375 Diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_10670 shikimate dehydrogenase 0.54 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_11315 shikimate dehydrogenase 0.57 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas simiae WCS417 0.42 PS417_00125 shikimate dehydrogenase 0.55 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0025 shikimate dehydrogenase 0.57 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0025 shikimate dehydrogenase 0.57 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.41 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.56 OH686_13800 diaminopimelate decarboxylase 0.79 9
Shewanella sp. ANA-3 0.41 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.56 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.93 15
Pseudomonas putida KT2440 0.41 PP_0074 shikimate 5-dehydrogenase 0.58 PP_5227 diaminopimelate decarboxylase — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS11630 shikimate dehydrogenase 0.55 ABCV34_RS12685 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00120 shikimate dehydrogenase 0.55 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00120 shikimate dehydrogenase 0.55 PFLU_RS29265 diaminopimelate decarboxylase — —
Shewanella oneidensis MR-1 0.41 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.56 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.88 21
Marinobacter adhaerens HP15 0.40 HP15_3750 shikimate dehydrogenase 0.56 HP15_247 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.40 Psest_0029 shikimate 5-dehydrogenase 0.57 Psest_3764 diaminopimelate decarboxylase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_00280 shikimate dehydrogenase 0.57 CSW01_00635 diaminopimelate decarboxylase low > 62
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.22 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.52 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.70 29
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.19 BWI76_RS23360 diaminopimelate decarboxylase 0.71 57
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.20 EFB2_01045 Diaminopimelate decarboxylase low > 86
Rahnella sp. WP5 0.36 EX31_RS15950 shikimate dehydrogenase 0.21 EX31_RS02420 type III PLP-dependent enzyme — —
Pantoea sp. MT58 0.36 IAI47_02315 shikimate dehydrogenase 0.18 IAI47_03860 diaminopimelate decarboxylase — —
Escherichia coli ECRC62 0.36 BNILDI_02165 aroE shikimate dehydrogenase 0.19 BNILDI_10310 lysA diaminopimelate decarboxylase 0.92 24
Escherichia coli ECOR27 0.36 NOLOHH_09355 aroE shikimate dehydrogenase 0.19 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.87 34
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.22 DDA3937_RS20740 type III PLP-dependent enzyme — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.22 DZA65_RS00505 type III PLP-dependent enzyme — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.22 HGI48_RS00505 type III PLP-dependent enzyme — —
Escherichia coli ECRC101 0.35 MCAODC_08085 aroE shikimate dehydrogenase 0.20 MCAODC_10470 lysA diaminopimelate decarboxylase 0.79 45
Escherichia coli ECRC99 0.35 KEDOAH_10585 aroE shikimate dehydrogenase 0.20 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC102 0.35 NIAGMN_15325 aroE shikimate dehydrogenase 0.20 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Serratia liquefaciens MT49 0.35 IAI46_23240 shikimate dehydrogenase 0.20 IAI46_20520 diaminopimelate decarboxylase low > 86
Escherichia coli ECRC100 0.35 OKFHMN_17565 aroE shikimate dehydrogenase 0.20 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.95 37
Shewanella loihica PV-4 0.35 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.55 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.78 52
Escherichia coli ECRC98 0.35 JDDGAC_21185 aroE shikimate dehydrogenase 0.20 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 86
Escherichia coli BL21 0.35 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.20 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.20 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli BW25113 0.35 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.20 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.93 17
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.20 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Escherichia coli ECOR38 0.35 HEPCGN_16385 aroE shikimate dehydrogenase 0.20 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.83 24
Variovorax sp. SCN45 0.34 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.60 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.20 LU632_RS06040 lysA diaminopimelate decarboxylase 0.54 39
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.18 HER17_RS03710 diaminopimelate decarboxylase 0.92 35
Variovorax sp. OAS795 0.32 ABID97_RS06300 shikimate dehydrogenase 0.60 ABID97_RS23305 diaminopimelate decarboxylase — —
Acinetobacter radioresistens SK82 0.31 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.55 MPMX26_02232 Diaminopimelate decarboxylase 0.84 7
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0259 shikimate 5-dehydrogenase 0.18 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated — —
Lysobacter sp. OAE881 0.28 ABIE51_RS01815 shikimate dehydrogenase 0.37 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Alteromonas macleodii MIT1002 0.28 MIT1002_00029 Shikimate dehydrogenase 0.58 MIT1002_00160 Diaminopimelate decarboxylase — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS14985 shikimate dehydrogenase 0.37 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.38 MMP_RS06180 diaminopimelate decarboxylase — —
Methanococcus maripaludis JJ 0.20 MMJJ_RS00280 shikimate dehydrogenase 0.38 MMJJ_RS08170 diaminopimelate decarboxylase — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.43 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.19 TX73_022410 shikimate dehydrogenase 0.43 TX73_024635 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.48 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) — —
Phaeobacter inhibens DSM 17395 0.18 PGA1_c35150 shikimate dehydrogenase AroE 0.42 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Agrobacterium fabrum C58 0.18 Atu0003 shikimate 5-dehydrogenase 0.46 Atu3601 diaminopimelate decarboxylase — —
Sinorhizobium meliloti 1021 0.17 SMc02791 shikimate 5-dehydrogenase 0.45 SMc00723 diaminopimelate DAP decarboxylase — —
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.25 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Bosea sp. OAE506 0.16 ABIE41_RS04650 shikimate dehydrogenase 0.41 ABIE41_RS08740 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.50 DvMF_0353 diaminopimelate decarboxylase (RefSeq) — —
Azospirillum sp. SherDot2 0.15 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.46 MPMX19_05819 Diaminopimelate decarboxylase — —
Rhizobium sp. OAE497 0.15 ABIE40_RS19250 shikimate dehydrogenase 0.45 ABIE40_RS17530 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 0.15 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.40 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.15 CCNA_00003 shikimate 5-dehydrogenase 0.40 CCNA_02296 diaminopimelate decarboxylase — —
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14200 shikimate dehydrogenase 0.33 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.93 10
Bacteroides thetaiotaomicron VPI-5482 0.14 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.33 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) — —
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06320 shikimate dehydrogenase 0.33 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.84 8
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.32 BACOVA_00215 diaminopimelate decarboxylase — —
Azospirillum brasilense Sp245 0.13 AZOBR_RS01765 shikimate 5-dehydrogenase 0.47 AZOBR_RS16945 diaminopimelate decarboxylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) — —
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS16750 shikimate dehydrogenase 0.31 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.51 35
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.33 CA265_RS09650 diaminopimelate decarboxylase — —
Phocaeicola dorei CL03T12C01 0.12 ABI39_RS12665 shikimate dehydrogenase 0.31 ABI39_RS19950 diaminopimelate decarboxylase 0.70 47
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_19075 shikimate dehydrogenase 0.33 CA264_02390 diaminopimelate decarboxylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.31 ABZR88_RS10180 diaminopimelate decarboxylase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.23 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —

Not shown: 3 genomes with orthologs for ABZR87_RS01605 only; 12 genomes with orthologs for ABZR87_RS02640 only