Conservation of cofitness between A4249_RS00510 and A4249_RS09990 in Brevundimonas sp. GW460-12-10-14-LB2

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Brevundimonas sp. GW460-12-10-14-LB2 1.0 A4249_RS00510 DNA repair protein RadC 1.0 A4249_RS09990 ammonium transporter 0.44 19
Rhizobium sp. OAE497 0.50 ABIE40_RS08620 DNA repair protein RadC 0.43 ABIE40_RS18420 ammonium transporter low > 107
Bosea sp. OAE506 0.50 ABIE41_RS13815 DNA repair protein RadC 0.41 ABIE41_RS04755 ammonium transporter low > 77
Sinorhizobium meliloti 1021 0.48 SMc00299 DNA repair protein RadC 0.40 SMc03807 ammonium transporter low > 103
Azospirillum brasilense Sp245 0.46 AZOBR_RS04400 DNA repair protein RadC 0.49 AZOBR_RS00845 ammonia channel protein low > 97
Phaeobacter inhibens DSM 17395 0.45 PGA1_c34550 DNA repair protein RadC 0.37 PGA1_c14730 ammonia channel low > 62
Dinoroseobacter shibae DFL-12 0.44 Dshi_3569 DNA repair protein RadC (RefSeq) 0.17 Dshi_0144 ammonium transporter (RefSeq) low > 64
Azospirillum sp. SherDot2 0.44 MPMX19_00291 hypothetical protein 0.50 MPMX19_02223 Ammonia channel low > 112
Rhodopseudomonas palustris CGA009 0.43 TX73_002000 DNA repair protein RadC 0.46 TX73_001425 ammonium transporter low > 86
Rhodospirillum rubrum S1H 0.42 Rru_A0732 DNA repair protein RadC (NCBI) 0.52 Rru_A1129 Ammonium transporter (NCBI) low > 58
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_3175 DNA repair protein radc 0.40 Ga0059261_2256 ammonium transporter low > 68
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF1170 DNA repair protein RadC 0.42 GFF1922 Ammonium transporter low > 90
Desulfovibrio vulgaris Miyazaki F 0.28 DvMF_3086 DNA repair protein RadC (RefSeq) 0.38 DvMF_0866 ammonium transporter (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.28 DVU1193 radC DNA repair protein RadC (TIGR) 0.38 DVU1231 amt ammonium transporter (TIGR) low > 55
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2126 DNA repair protein RadC 0.43 Pf1N1B4_2167 Ammonium transporter low > 87
Klebsiella michiganensis M5al 0.27 BWI76_RS27365 hypothetical protein 0.41 BWI76_RS06605 ammonium transporter 0.21 5
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_12545 hypothetical protein 0.46 AO356_12705 ammonia channel protein low > 104
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0222 DNA replication and repair protein RadC 0.42 Psyr_2277 ammonium transporter low > 86
Ralstonia solanacearum UW163 0.27 UW163_RS08960 JAB domain-containing protein 0.43 UW163_RS02730 ammonia channel protein — —
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS04710 JAB domain-containing protein 0.43 RALBFv3_RS10850 ammonia channel protein low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0222 DNA replication and repair protein RadC 0.42 Psyr_2277 ammonium transporter low > 86
Ralstonia solanacearum GMI1000 0.26 RS_RS12270 JAB domain-containing protein 0.43 RS_RS01690 ammonium transporter low > 80
Pseudomonas stutzeri RCH2 0.26 Psest_3803 DNA repair protein radc 0.46 Psest_3772 ammonium transporter low > 67
Dickeya dianthicola ME23 0.26 DZA65_RS00755 JAB domain-containing protein 0.37 DZA65_RS06070 ammonium transporter AmtB low > 75
Dickeya dianthicola 67-19 0.26 HGI48_RS00700 DNA repair protein RadC 0.37 HGI48_RS05745 ammonium transporter AmtB low > 71
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_04066 DNA replication and repair protein RadC 0.49 H281DRAFT_02012 ammonium transporter low > 103
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS00330 DNA repair protein RadC 0.41 ABZR87_RS06700 ammonium transporter low > 80
Pseudomonas fluorescens SBW25 0.26 PFLU_RS29445 JAB domain-containing protein 0.44 PFLU_RS29300 ammonium transporter low > 109
Ralstonia solanacearum PSI07 0.26 RPSI07_RS12675 JAB domain-containing protein 0.43 RPSI07_RS22460 ammonia channel protein low > 81
Pseudomonas simiae WCS417 0.26 PS417_27770 hypothetical protein 0.42 PS417_27615 ammonia channel protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4377 DNA repair protein RadC 0.46 Pf6N2E2_4412 Ammonium transporter low > 103
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS03085 DNA repair protein RadC 0.49 QEN71_RS01405 ammonium transporter low > 153
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS29445 JAB domain-containing protein 0.44 PFLU_RS29300 ammonium transporter low > 109
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS05945 hypothetical protein 0.41 HSERO_RS00425 ammonia channel protein low > 78
Paraburkholderia graminis OAS925 0.26 ABIE53_003289 DNA repair protein RadC 0.48 ABIE53_000655 Amt family ammonium transporter low > 113
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_09220 hypothetical protein 0.43 AO353_09070 ammonia channel protein low > 101
Pectobacterium carotovorum WPP14 0.26 HER17_RS20830 DNA repair protein RadC 0.39 HER17_RS15785 ammonium transporter AmtB low > 75
Dickeya dadantii 3937 0.26 DDA3937_RS20515 DNA repair protein RadC 0.34 DDA3937_RS05700 ammonium transporter AmtB low > 74
Serratia liquefaciens MT49 0.25 IAI46_24825 DNA repair protein RadC 0.40 IAI46_05085 ammonium transporter AmtB low > 86
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS15625 hypothetical protein 0.48 BPHYT_RS02550 ammonia channel protein low > 109
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00064 hypothetical protein 0.40 OHPLBJKB_03222 Ammonia channel low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF371 DNA repair protein RadC 0.40 GFF4368 Ammonium transporter low > 78
Escherichia coli BL21 0.25 ECD_03495 UPF0758 family protein 0.40 ECD_00403 ammonium transporter low > 61
Escherichia coli ECRC98 0.25 JDDGAC_19245 radC DNA repair protein RadC 0.40 JDDGAC_11915 amtB ammonium transporter AmtB low > 86
Escherichia coli ECRC62 0.25 BNILDI_04015 radC DNA repair protein RadC 0.40 BNILDI_22610 amtB ammonium transporter AmtB low > 75
Escherichia coli ECOR38 0.25 HEPCGN_14445 radC DNA repair protein RadC 0.40 HEPCGN_06875 amtB ammonium transporter AmtB low > 87
Escherichia fergusonii Becca 0.25 EFB2_00175 hypothetical protein 0.40 EFB2_03606 Ammonia channel low > 86
Escherichia coli ECRC99 0.25 KEDOAH_12530 radC DNA repair protein RadC 0.40 KEDOAH_19705 amtB ammonium transporter AmtB — —
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS16995 hypothetical protein 0.41 RR42_RS01760 ammonia channel protein low > 128
Escherichia coli ECOR27 0.25 NOLOHH_07500 radC DNA repair protein RadC 0.40 NOLOHH_01195 amtB ammonium transporter AmtB low > 75
Dechlorosoma suillum PS 0.25 Dsui_1537 DNA repair protein radc 0.45 Dsui_0114 ammonium transporter low > 51
Escherichia coli ECRC102 0.25 NIAGMN_13380 radC DNA repair protein RadC 0.40 NIAGMN_06315 amtB ammonium transporter AmtB — —
Escherichia coli ECRC101 0.25 MCAODC_06130 radC DNA repair protein RadC 0.40 MCAODC_27485 amtB ammonium transporter AmtB low > 87
Escherichia coli BW25113 0.25 b3638 radC DNA repair protein (VIMSS) 0.40 b0451 amtB ammonium transporter (NCBI) low > 76
Pseudomonas sp. RS175 0.25 PFR28_04412 hypothetical protein 0.47 PFR28_04382 Ammonia channel low > 88
Escherichia coli Nissle 1917 0.25 ECOLIN_RS20730 DNA repair protein RadC 0.40 ECOLIN_RS02700 ammonium transporter AmtB low > 55
Escherichia coli ECRC100 0.25 OKFHMN_15620 radC DNA repair protein RadC 0.40 OKFHMN_08260 amtB ammonium transporter AmtB low > 80
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_798 DNA repair protein RadC 0.43 PfGW456L13_838 Ammonium transporter low > 87
Rahnella sp. WP5 0.24 EX31_RS14470 JAB domain-containing protein 0.37 EX31_RS22320 ammonium transporter AmtB low > 89
Enterobacter asburiae PDN3 0.24 EX28DRAFT_3888 DNA repair protein radc 0.39 EX28DRAFT_2518 ammonium transporter low > 76
Pseudomonas putida KT2440 0.24 PP_5284 UPF0758 protein PP_5284 0.42 PP_5233 ammonium transporter AmtB low > 96
Alteromonas macleodii MIT1002 0.24 MIT1002_00049 DNA repair protein RadC 0.14 MIT1002_00417 Ammonia transporter low > 70
Enterobacter sp. TBS_079 0.24 MPMX20_00097 hypothetical protein 0.40 MPMX20_01043 Ammonia channel low > 85
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_01155 DNA repair protein RadC 0.16 CSW01_03200 ammonium transporter low > 62
Erwinia tracheiphila SCR3 0.24 LU632_RS21995 radC DNA repair protein RadC 0.40 LU632_RS18270 amtB ammonium transporter AmtB low > 74
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS15615 DNA repair protein RadC 0.43 ABZR86_RS09495 ammonium transporter low > 74
Marinobacter adhaerens HP15 0.23 HP15_3321 DNA repair protein RadC-like protein 0.15 HP15_274 ammonium/methylammonium permease low > 73
Shewanella amazonensis SB2B 0.23 Sama_0327 radC DNA repair protein RadC (RefSeq) 0.19 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_15660 radC DNA repair protein RadC 0.37 OKGIIK_14925 Ammonium transporter low > 52
Pantoea sp. MT58 0.23 IAI47_00620 DNA repair protein RadC 0.39 IAI47_14580 ammonium transporter AmtB low > 76
Pseudomonas sp. S08-1 0.23 OH686_13620 UPF0758 family protein 0.44 OH686_13760 Ammonium transporter low > 80
Variovorax sp. OAS795 0.23 ABID97_RS07700 DNA repair protein RadC 0.38 ABID97_RS03635 ammonium transporter low > 91
Shewanella loihica PV-4 0.22 Shew_3481 DNA repair protein RadC (RefSeq) 0.19 Shew_0847 Rh family protein/ammonium transporter (RefSeq) low > 60
Variovorax sp. SCN45 0.22 GFF5700 UPF0758 family protein 0.44 GFF5119 Ammonium transporter low > 127
Rhodanobacter denitrificans MT42 0.21 LRK55_RS08695 DNA repair protein RadC 0.37 LRK55_RS07860 ammonium transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.21 LRK54_RS09165 DNA repair protein RadC 0.37 LRK54_RS08110 ammonium transporter low > 59
Castellaniella sp019104865 MT123 0.21 ABCV34_RS00910 DNA repair protein RadC 0.33 ABCV34_RS04770 ammonium transporter low > 48
Shewanella oneidensis MR-1 0.20 SO4248 radC DNA repair protein RadC (NCBI ptt file) 0.19 SO0760 amt ammonium transporter (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.20 Shewana3_3770 radC DNA repair protein RadC (RefSeq) 0.44 Shewana3_0778 ammonium transporter (RefSeq) low > 73
Xanthomonas campestris pv. campestris strain 8004 0.19 Xcc-8004.4897.1 DNA repair protein RadC 0.43 Xcc-8004.249.1 Ammonium transporter low > 74
Acidovorax sp. GW101-3H11 0.19 Ac3H11_1774 DNA repair protein RadC 0.43 Ac3H11_3322 Ammonium transporter low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_13835 hypothetical protein 0.32 CA264_09145 ammonia channel protein low > 74
Acinetobacter radioresistens SK82 0.18 MPMX26_02636 hypothetical protein 0.47 MPMX26_00150 Ammonia channel — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS01715 DNA repair protein RadC 0.33 ABZR88_RS18240 ammonium transporter low > 71
Synechococcus elongatus PCC 7942 0.17 Synpcc7942_1227 radC DNA repair protein RadC 0.27 Synpcc7942_2279 amtB ammonium transporter low > 38
Lysobacter sp. OAE881 0.17 ABIE51_RS00095 DNA repair protein RadC 0.41 ABIE51_RS01435 ammonium transporter low > 62
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03503 DNA repair protein RadC 0.39 BACOVA_03766 ammonium transporter low > 94
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS02750 DNA repair protein RadC 0.19 ABI39_RS14275 ammonium transporter low > 72

Not shown: 3 genomes with orthologs for A4249_RS00510 only; 13 genomes with orthologs for A4249_RS09990 only