Conservation of cofitness between Sama_0857 and Sama_0260 in Shewanella amazonensis SB2B

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) 1.0 Sama_0260 argininosuccinate lyase (RefSeq) 0.87 6
Shewanella oneidensis MR-1 0.89 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) 0.76 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.87 27
Shewanella sp. ANA-3 0.89 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) 0.76 Shewana3_3901 argininosuccinate lyase (RefSeq) 0.84 55
Shewanella loihica PV-4 0.85 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) 0.73 Shew_0206 argininosuccinate lyase (RefSeq) 0.98 20
Serratia liquefaciens MT49 0.67 IAI46_22345 glutamate synthase large subunit 0.68 IAI46_24500 argininosuccinate lyase 0.87 7
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12030 glutamate synthase large subunit 0.65 CSW01_13360 argininosuccinate lyase low > 62
Rahnella sp. WP5 0.67 EX31_RS12515 glutamate synthase large subunit 0.66 EX31_RS14180 argininosuccinate lyase 0.98 5
Pectobacterium carotovorum WPP14 0.67 HER17_RS19910 glutamate synthase large subunit 0.65 HER17_RS20620 argininosuccinate lyase low > 75
Erwinia tracheiphila SCR3 0.66 LU632_RS21315 gltB glutamate synthase large subunit 0.65 LU632_RS19600 argH argininosuccinate lyase low > 74
Alteromonas macleodii MIT1002 0.66 MIT1002_03139 Glutamate synthase [NADPH] large chain precursor 0.60 MIT1002_00467 Argininosuccinate lyase 0.98 9
Dickeya dianthicola 67-19 0.66 HGI48_RS01560 glutamate synthase large subunit 0.64 HGI48_RS00885 argininosuccinate lyase 0.89 9
Dickeya dadantii 3937 0.66 DDA3937_RS01665 glutamate synthase large subunit 0.66 DDA3937_RS20340 argininosuccinate lyase 0.88 28
Dickeya dianthicola ME23 0.66 DZA65_RS01635 glutamate synthase large subunit 0.65 DZA65_RS00945 argininosuccinate lyase low > 75
Escherichia coli ECOR38 0.66 HEPCGN_16760 gltB3 Glutamate synthase domain 3 0.66 HEPCGN_12220 argH argininosuccinate lyase 0.93 21
Escherichia fergusonii Becca 0.66 EFB2_00611 Glutamate synthase [NADPH] large chain 0.66 EFB2_04654 Argininosuccinate lyase low > 86
Escherichia coli Nissle 1917 0.66 ECOLIN_RS18475 glutamate synthase large subunit 0.66 ECOLIN_RS22855 argininosuccinate lyase low > 55
Escherichia coli BL21 0.66 ECD_03077 glutamate synthase, large subunit 0.66 ECD_03845 argininosuccinate lyase 0.64 25
Escherichia coli BW25113 0.66 b3212 gltB glutamate synthase, large subunit (NCBI) 0.66 b3960 argH argininosuccinate lyase (NCBI) 0.50 53
Escherichia coli ECRC62 0.66 BNILDI_01850 gltB glutamate synthase large subunit 0.65 BNILDI_05805 argH argininosuccinate lyase 0.94 18
Escherichia coli ECRC102 0.66 NIAGMN_15645 gltB glutamate synthase large subunit 0.65 NIAGMN_11325 argH argininosuccinate lyase — —
Escherichia coli ECRC101 0.66 MCAODC_08405 gltB glutamate synthase large subunit 0.66 MCAODC_04075 argH argininosuccinate lyase 0.63 36
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00488 Glutamate synthase [NADPH] large chain 0.66 OHPLBJKB_04090 Argininosuccinate lyase low > 73
Escherichia coli ECRC100 0.66 OKFHMN_17885 gltB glutamate synthase large subunit 0.66 OKFHMN_13575 argH argininosuccinate lyase 0.89 48
Klebsiella michiganensis M5al 0.66 BWI76_RS25315 glutamate synthase large subunit 0.66 BWI76_RS00855 argininosuccinate lyase 0.66 26
Escherichia coli ECRC98 0.66 JDDGAC_21510 gltB glutamate synthase large subunit 0.66 JDDGAC_17200 argH argininosuccinate lyase 0.91 35
Escherichia coli ECRC99 0.66 KEDOAH_10265 gltB glutamate synthase large subunit 0.66 KEDOAH_14585 argH argininosuccinate lyase — —
Escherichia coli ECOR27 0.66 NOLOHH_09685 gltB glutamate synthase large subunit 0.65 NOLOHH_05720 argH argininosuccinate lyase 0.93 17
Enterobacter sp. TBS_079 0.66 MPMX20_04126 Glutamate synthase [NADPH] large chain 0.67 MPMX20_04520 Argininosuccinate lyase 0.54 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.66 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3275 Glutamate synthase domain 2 0.66 EX28DRAFT_4422 argininosuccinate lyase 0.59 69
Pseudomonas sp. S08-1 0.59 OH686_10005 Glutamate synthase [NADPH] large chain 0.46 OH686_13885 argininosuccinate lyase 0.72 33
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3752 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.44 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas stutzeri RCH2 0.58 Psest_3711 Glutamate synthase domain 2 0.45 Psest_3751 argininosuccinate lyase — —
Marinobacter adhaerens HP15 0.58 HP15_482 glutamate synthase subunit alpha 0.46 HP15_243 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09375 glutamate synthase 0.44 AO356_12780 argininosuccinate lyase 0.66 39
Pseudomonas sp. RS175 0.58 PFR28_05015 Glutamate synthase [NADPH] large chain 0.44 PFR28_04367 Argininosuccinate lyase — —
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_272 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.44 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) low > 87
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12515 glutamate synthase 0.44 AO353_09000 argininosuccinate lyase 0.69 35
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.44 Psyr_0065 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.44 Psyr_0065 argininosuccinate lyase — —
Pseudomonas putida KT2440 0.58 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.44 PP_0184 Argininosuccinate lyase 0.23 74
Pseudomonas simiae WCS417 0.58 PS417_02000 glutamate synthase 0.44 PS417_27540 argininosuccinate lyase — —
Pseudomonas fluorescens SBW25 0.58 PFLU_RS02045 glutamate synthase large subunit 0.44 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS02045 glutamate synthase large subunit 0.44 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.44 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) — —
Acinetobacter radioresistens SK82 0.56 MPMX26_02808 Glutamate synthase [NADPH] large chain 0.43 MPMX26_00185 Argininosuccinate lyase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.44.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.18 Xcc-8004.2323.1 Argininosuccinate lyase (EC 4.3.2.1) 0.97 4
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10960 glutamate synthase large subunit 0.19 LRK54_RS02380 argininosuccinate lyase low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10665 glutamate synthase large subunit 0.19 LRK55_RS02135 argininosuccinate lyase low > 63
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16795 glutamate synthase large subunit 0.19 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.86 50
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01270 glutamate synthase large subunit 0.23 HMPREF1078_RS11315 argininosuccinate lyase low > 61
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0890 glsF glutamate synthase (ferredoxin) 0.43 Synpcc7942_2475 argH argininosuccinate lyase — —
Bacteroides ovatus ATCC 8483 0.41 BACOVA_03756 class II glutamine amidotransferase 0.22 BACOVA_03551 argininosuccinate lyase low > 94
Bosea sp. OAE506 0.41 ABIE41_RS08565 glutamate synthase large subunit 0.44 ABIE41_RS08750 argininosuccinate lyase — —
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS06920 glutamate synthase large subunit 0.24 HMPREF1058_RS09585 argininosuccinate lyase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0553 glutamate synthase, large subunit (NCBI ptt file) 0.22 BT3733 arginosuccinate lyase (EC 4.3.2.1) (from data) low > 81
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS16055 glutamate synthase large subunit 0.22 HMPREF1181_RS03410 argininosuccinate lyase low > 56
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS20685 glutamate synthase large subunit 0.24 ABI39_RS07095 argininosuccinate lyase low > 72
Azospirillum sp. SherDot2 0.41 MPMX19_02657 Glutamate synthase [NADPH] large chain 0.42 MPMX19_05817 Argininosuccinate lyase — —
Rhodopseudomonas palustris CGA009 0.41 TX73_004590 glutamate synthase large subunit 0.41 TX73_024645 argininosuccinate lyase — —
Dechlorosoma suillum PS 0.40 Dsui_1096 glutamate synthase family protein 0.43 Dsui_0111 argininosuccinate lyase — —
Rhizobium sp. OAE497 0.40 ABIE40_RS16275 glutamate synthase large subunit 0.45 ABIE40_RS17520 argininosuccinate lyase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19595 glutamate synthase 0.43 HSERO_RS14685 argininosuccinate lyase — —
Rhodospirillum rubrum S1H 0.40 Rru_A0019 Glutamate synthase (ferredoxin) (NCBI) 0.40 Rru_A0397 Argininosuccinate lyase (NCBI) — —
Sinorhizobium meliloti 1021 0.40 SMc04028 glutamate synthase 0.44 SMc00725 argininosuccinate lyase low > 103
Ralstonia solanacearum GMI1000 0.40 RS_RS14860 glutamate synthase subunit alpha 0.41 RS_RS11865 argininosuccinate lyase — —
Ralstonia solanacearum UW163 0.40 UW163_RS06700 glutamate synthase subunit alpha 0.42 UW163_RS09390 argininosuccinate lyase — —
Agrobacterium fabrum C58 0.40 Atu3784 glutamate synthase large subunit 0.43 Atu3599 argininosuccinate lyase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06915 glutamate synthase subunit alpha 0.42 RALBFv3_RS04280 argininosuccinate lyase — —
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS28010 glutamate synthase-related protein 0.42 QEN71_RS24970 argininosuccinate lyase 0.80 31
Ralstonia solanacearum PSI07 0.40 RPSI07_RS10320 glutamate synthase subunit alpha 0.41 RPSI07_RS13080 argininosuccinate lyase — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS02570 glutamate synthase-related protein 0.41 ABZR87_RS16170 argininosuccinate lyase 0.76 30
Variovorax sp. OAS795 0.39 ABID97_RS23225 glutamate synthase-related protein 0.43 ABID97_RS08190 argininosuccinate lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_05620 glutamate synthase (NADH) large subunit 0.42 H281DRAFT_00194 argininosuccinate lyase 0.47 44
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS18990 glutamate synthase 0.42 RR42_RS15925 argininosuccinate lyase — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11150 glutamate synthase-related protein 0.44 ABCV34_RS03060 argininosuccinate lyase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1327 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.42 GFF736 Argininosuccinate lyase (EC 4.3.2.1) — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS17855 glutamate synthase 0.42 BPHYT_RS05210 argininosuccinate lyase — —
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1800 Glutamate synthase domain 2 0.40 Ga0059261_2049 argininosuccinate lyase 0.79 27
Variovorax sp. SCN45 0.39 GFF5332 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.43 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_15200 Glutamate synthase subunit alpha 0.19 OKGIIK_09430 argH argininosuccinate lyase low > 52
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4710 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.43 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) — —
Magnetospirillum magneticum AMB-1 0.39 AMB_RS02685 glutamate synthase large subunit 0.41 AMB_RS22715 argininosuccinate lyase — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c36100 glutamate synthase [NADPH] large chain 0.43 PGA1_c03450 argininosuccinate lyase ArgH — —
Mycobacterium tuberculosis H37Rv 0.39 Rv3859c Probable ferredoxin-dependent glutamate synthase [NADPH] (large subunit) GltB (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH))(NADPH-GOGAT) 0.29 Rv1659 Probable argininosuccinate lyase ArgH — —
Dinoroseobacter shibae DFL-12 0.38 Dshi_0002 Glutamate synthase (ferredoxin) (RefSeq) 0.42 Dshi_3062 argininosuccinate lyase (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.40 CCNA_02294 argininosuccinate lyase — —
Caulobacter crescentus NA1000 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.40 CCNA_02294 argininosuccinate lyase — —
Bifidobacterium breve UCC2003 0.37 BBR_RS15255 glutamate synthase large subunit 0.33 BBR_RS13955 argininosuccinate lyase low > 34
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS16105 glutamate synthase large subunit 0.40 A4249_RS12555 argininosuccinate lyase 1.00 4

Not shown: 3 genomes with orthologs for Sama_0857 only; 9 genomes with orthologs for Sama_0260 only