Conservation of cofitness between BT3195 and BT3712 in Bacteroides thetaiotaomicron VPI-5482

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3195 conserved hypothetical protein (NCBI ptt file) 1.0 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) 0.61 2
Bacteroides ovatus ATCC 8483 0.97 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.98 BACOVA_03528 pseudouridine synthase, RluA family low > 94
Bacteroides stercoris CC31F 0.94 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.91 HMPREF1181_RS03250 RluA family pseudouridine synthase low > 56
Phocaeicola dorei CL03T12C01 0.88 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.83 ABI39_RS02845 RluA family pseudouridine synthase low > 72
Phocaeicola vulgatus CL09T03C04 0.88 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.83 HMPREF1058_RS08615 RluA family pseudouridine synthase low > 67
Parabacteroides merdae CL09T00C40 0.74 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_2376 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.53 Echvi_0642 pseudouridine synthase, RluA family low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.53 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 CA264_15205 RNA pseudouridine synthase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.51 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase 0.55 ABZR88_RS03985 RluA family pseudouridine synthase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.54 CA265_RS14415 pseudouridine synthase low > 88
Castellaniella sp019104865 MT123 0.38 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.25 ABCV34_RS01885 RluA family pseudouridine synthase 0.87 18
Alteromonas macleodii MIT1002 0.37 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.27 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Klebsiella michiganensis M5al 0.36 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase
Escherichia fergusonii Becca 0.35 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.27 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Lysobacter sp. OAE881 0.35 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.28 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.29 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Escherichia coli ECOR38 0.35 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 85
Escherichia coli ECRC102 0.35 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli ECRC99 0.35 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli BW25113 0.35 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.27 b2594 rluD 23S rRNA pseudouridine synthase (NCBI)
Escherichia coli ECRC98 0.35 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli ECOR27 0.35 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 57
Escherichia coli ECRC101 0.35 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.27 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 73
Escherichia coli ECRC62 0.35 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli BL21 0.35 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.27 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 60
Escherichia coli ECRC101 0.35 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.30 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.26 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Variovorax sp. SCN45 0.35 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.24 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Escherichia coli Nissle 1917 0.35 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.30 RR42_RS07590 pseudouridine synthase low > 128
Pantoea sp. MT58 0.35 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Acidovorax sp. GW101-3H11 0.35 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.27 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 79
Rhodanobacter denitrificans MT42 0.35 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.28 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF613 tRNA-i(6)A37 methylthiotransferase 0.24 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Pseudomonas sp. S08-1 0.35 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.27 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Serratia liquefaciens MT49 0.35 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 86
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.27 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Sinorhizobium meliloti 1021 0.34 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.30 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Variovorax sp. OAS795 0.34 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.22 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Fusobacterium nucleatum SB010 0.34 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 HUW76_08575 RluA family pseudouridine synthase low > 35
Ralstonia solanacearum PSI07 0.34 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.28 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Marinobacter adhaerens HP15 0.34 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.29 HP15_527 pseudouridine synthase, RluA family low > 73
Shewanella amazonensis SB2B 0.34 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.27 Sama_2605 pseudouridylate synthase (RefSeq)
Ralstonia solanacearum GMI1000 0.34 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 RS_RS08205 RluA family pseudouridine synthase low > 80
Dickeya dadantii 3937 0.34 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Enterobacter sp. TBS_079 0.34 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.26 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.30 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.34 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.30 UW163_RS14830 RluA family pseudouridine synthase
Dickeya dianthicola 67-19 0.34 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Erwinia tracheiphila SCR3 0.34 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola ME23 0.34 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Pectobacterium carotovorum WPP14 0.34 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Agrobacterium fabrum C58 0.34 Atu0356 miaB protein 0.30 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily
Rahnella sp. WP5 0.34 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 52
Dinoroseobacter shibae DFL-12 0.33 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) 0.29 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) 0.40 7
Shewanella sp. ANA-3 0.33 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.27 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Rhizobium sp. OAE497 0.33 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.29 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Shewanella loihica PV-4 0.33 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.27 Shew_2950 RluA family pseudouridine synthase (RefSeq) 0.51 6
Azospirillum sp. SherDot2 0.33 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.31 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Caulobacter crescentus NA1000 0.33 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.25 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.44 49
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.25 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.30 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific low > 40
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.28 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Phaeobacter inhibens DSM 17395 0.33 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.29 PGA1_c09000 ribosomal large subunit pseudouridine synthase D low > 62
Pseudomonas fluorescens SBW25 0.32 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.28 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 CSW01_03695 ribosomal large subunit pseudouridine synthase D low > 62
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.28 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Acinetobacter radioresistens SK82 0.32 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.26 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.28 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas simiae WCS417 0.32 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.27 PS417_03820 ribosomal large subunit pseudouridine synthase D
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 A4249_RS10060 RluA family pseudouridine synthase low > 48
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.28 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Azospirillum brasilense Sp245 0.32 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.14 AZOBR_RS06905 pseudouridine synthase low > 97
Pseudomonas sp. RS175 0.32 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.27 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Bosea sp. OAE506 0.32 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.28 ABIE41_RS05635 RluA family pseudouridine synthase low > 77
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.27 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.26 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D low > 38
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.27 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Rhodospirillum rubrum S1H 0.32 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.29 Rru_A1111 Pseudouridine synthase, RluD (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.32 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.30 AMB_RS16095 RluA family pseudouridine synthase 0.54 61
Mycobacterium tuberculosis H37Rv 0.31 Rv2733c Conserved hypothetical alanine, arginine-rich protein 0.17 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.28 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Bifidobacterium breve UCC2003 0.29 BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.14 BBR_RS17135 RluA family pseudouridine synthase low > 34
Rhodopseudomonas palustris CGA009 0.28 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 TX73_001905 RluA family pseudouridine synthase low > 86
Methanococcus maripaludis S2 0.19 MMP_RS02195 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 0.21 MMP_RS05225 RluA family pseudouridine synthase low > 25
Methanococcus maripaludis JJ 0.18 MMJJ_RS03110 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase 0.22 MMJJ_RS09155 RluA family pseudouridine synthase low > 28

Not shown: 9 genomes with orthologs for BT3195 only; 1 genomes with orthologs for BT3712 only