Conservation of cofitness between b3281 and b3771 in Escherichia coli BW25113

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.95 4
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli BL21 1.00 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 1.00 ECD_03649 dihydroxyacid dehydratase low > 60
Escherichia coli ECOR27 0.99 NOLOHH_09355 aroE shikimate dehydrogenase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECRC62 0.99 BNILDI_02165 aroE shikimate dehydrogenase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.98 OKFHMN_17565 aroE shikimate dehydrogenase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC98 0.98 JDDGAC_21185 aroE shikimate dehydrogenase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.98 MCAODC_08085 aroE shikimate dehydrogenase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.98 NIAGMN_15325 aroE shikimate dehydrogenase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.98 KEDOAH_10585 aroE shikimate dehydrogenase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli Nissle 1917 0.97 ECOLIN_RS18840 shikimate dehydrogenase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli ECOR38 0.97 HEPCGN_16385 aroE shikimate dehydrogenase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia fergusonii Becca 0.96 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Enterobacter sp. TBS_079 0.82 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.90 8
Enterobacter asburiae PDN3 0.81 EX28DRAFT_0046 shikimate dehydrogenase 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Klebsiella michiganensis M5al 0.81 BWI76_RS25645 shikimate dehydrogenase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.81 3
Serratia liquefaciens MT49 0.66 IAI46_23240 shikimate dehydrogenase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.62 31
Pantoea sp. MT58 0.66 IAI47_02315 shikimate dehydrogenase 0.89 IAI47_01035 dihydroxy-acid dehydratase — —
Erwinia tracheiphila SCR3 0.64 LU632_RS22445 aroE shikimate dehydrogenase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.59 15
Pectobacterium carotovorum WPP14 0.62 HER17_RS02250 shikimate dehydrogenase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.93 26
Rahnella sp. WP5 0.62 EX31_RS15950 shikimate dehydrogenase 0.87 EX31_RS15005 dihydroxy-acid dehydratase — —
Dickeya dadantii 3937 0.61 DDA3937_RS19100 shikimate dehydrogenase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase — —
Dickeya dianthicola 67-19 0.61 HGI48_RS19190 shikimate dehydrogenase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase — —
Dickeya dianthicola ME23 0.60 DZA65_RS20315 shikimate dehydrogenase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase — —
Pseudomonas sp. RS175 0.50 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.75 PFR28_04278 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.54 26
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_10670 shikimate dehydrogenase 0.75 AO353_08345 dihydroxy-acid dehydratase 0.76 11
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_11315 shikimate dehydrogenase 0.75 AO356_13250 dihydroxy-acid dehydratase 0.50 35
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_00280 shikimate dehydrogenase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0025 shikimate dehydrogenase 0.74 Psyr_0469 dihydroxyacid dehydratase 0.66 14
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0025 shikimate dehydrogenase 0.74 Psyr_0469 dihydroxyacid dehydratase 0.60 34
Pseudomonas simiae WCS417 0.48 PS417_00125 shikimate dehydrogenase 0.75 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.83 1
Shewanella sp. ANA-3 0.48 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.93 14
Pseudomonas sp. S08-1 0.48 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.75 OH686_14100 dihydroxy-acid dehydratase low > 80
Shewanella oneidensis MR-1 0.48 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.88 31
Dechlorosoma suillum PS 0.48 Dsui_0443 shikimate 5-dehydrogenase 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Pseudomonas stutzeri RCH2 0.47 Psest_0029 shikimate 5-dehydrogenase 0.75 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS00120 shikimate dehydrogenase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS00120 shikimate dehydrogenase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Shewanella loihica PV-4 0.47 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.82 18
Pseudomonas putida KT2440 0.45 PP_0074 shikimate 5-dehydrogenase 0.74 PP_5128 Dihydroxy-acid dehydratase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS01990 shikimate 5-dehydrogenase 0.74 HSERO_RS02650 dihydroxy-acid dehydratase 0.74 18
Shewanella amazonensis SB2B 0.43 Sama_0052 shikimate dehydrogenase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.71 24
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS27130 shikimate dehydrogenase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Marinobacter adhaerens HP15 0.41 HP15_3750 shikimate dehydrogenase 0.70 HP15_595 dihydroxy-acid dehydratase — —
Paraburkholderia graminis OAS925 0.41 ABIE53_003560 shikimate dehydrogenase 0.74 ABIE53_006513 dihydroxy-acid dehydratase — —
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_01679 shikimate dehydrogenase (EC 1.1.1.25) 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS16975 shikimate 5-dehydrogenase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase 0.71 24
Acinetobacter radioresistens SK82 0.40 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.29 MPMX26_03019 Dihydroxy-acid dehydratase 0.78 15
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11620 shikimate dehydrogenase 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS01605 shikimate dehydrogenase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS05945 shikimate dehydrogenase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.37 UW163_RS07680 shikimate dehydrogenase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Ralstonia solanacearum GMI1000 0.37 RS_RS13890 shikimate dehydrogenase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS11300 shikimate dehydrogenase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS17645 shikimate dehydrogenase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.72 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.76 41
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS14985 shikimate dehydrogenase 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase 0.94 50
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.75 43
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Variovorax sp. SCN45 0.32 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Alteromonas macleodii MIT1002 0.31 MIT1002_00029 Shikimate dehydrogenase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.70 27
Variovorax sp. OAS795 0.29 ABID97_RS06300 shikimate dehydrogenase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.31 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.75 SMc04045 dihydroxy-acid dehydratase — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c35150 shikimate dehydrogenase AroE 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Azospirillum sp. SherDot2 0.21 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.19 ABIE41_RS04650 shikimate dehydrogenase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.92 11
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.25 A4249_RS10030 dihydroxy-acid dehydratase — —
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05065 putative shikimate dehydrogenase 0.62 BACOVA_03302 dihydroxy-acid dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.93 8
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06320 shikimate dehydrogenase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.79 34
Bacteroides thetaiotaomicron VPI-5482 0.17 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.63 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS16750 shikimate dehydrogenase 0.64 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS12665 shikimate dehydrogenase 0.64 ABI39_RS12715 dihydroxy-acid dehydratase 0.82 18
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.27 CA265_RS15795 dihydroxy-acid dehydratase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1145 Shikimate 5-dehydrogenase 0.29 Echvi_2055 dihydroxy-acid dehydratase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS20055 shikimate dehydrogenase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —

Not shown: 1 genomes with orthologs for b3281 only; 12 genomes with orthologs for b3771 only