Conservation of cofitness between b0908 and b3771 in Escherichia coli BW25113

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.93 5
Escherichia coli ECRC99 1.00 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 1.00 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC98 1.00 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 1.00 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 1.00 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 1.00 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECOR27 1.00 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 1.00 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 1.00 ECD_03649 dihydroxyacid dehydratase 0.48 53
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECOR38 0.98 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli Nissle 1917 0.98 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia fergusonii Becca 0.98 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.92 4
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.62 15
Klebsiella michiganensis M5al 0.87 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.83 3
Rahnella sp. WP5 0.83 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase 0.87 EX31_RS15005 dihydroxy-acid dehydratase — —
Pantoea sp. MT58 0.83 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase 0.89 IAI47_01035 dihydroxy-acid dehydratase — —
Dickeya dadantii 3937 0.80 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase — —
Serratia liquefaciens MT49 0.80 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.59 59
Dickeya dianthicola ME23 0.80 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase — —
Dickeya dianthicola 67-19 0.79 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase — —
Erwinia tracheiphila SCR3 0.79 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.69 46
Pectobacterium carotovorum WPP14 0.78 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.93 15
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Alteromonas macleodii MIT1002 0.67 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase — —
Shewanella amazonensis SB2B 0.67 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.62 26
Shewanella oneidensis MR-1 0.67 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.87 32
Shewanella loihica PV-4 0.67 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.80 12
Shewanella sp. ANA-3 0.66 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.94 14
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase 0.78 44
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Paraburkholderia graminis OAS925 0.54 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 ABIE53_006513 dihydroxy-acid dehydratase — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 HSERO_RS02650 dihydroxy-acid dehydratase — —
Ralstonia solanacearum GMI1000 0.51 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.51 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Desulfovibrio vulgaris Miyazaki F 0.28 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) — —
Methanococcus maripaludis S2 0.27 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase 0.35 MMP_RS01700 dihydroxy-acid dehydratase — —
Bacteroides thetaiotaomicron VPI-5482 0.27 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) 0.63 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) — —
Methanococcus maripaludis JJ 0.27 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase 0.35 MMJJ_RS03675 dihydroxy-acid dehydratase — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.72 39
Bacteroides ovatus ATCC 8483 0.25 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 BACOVA_03302 dihydroxy-acid dehydratase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase 0.29 Echvi_2055 dihydroxy-acid dehydratase — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase 0.65 HMPREF1078_RS16695 dihydroxy-acid dehydratase — —
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase 0.64 ABI39_RS12715 dihydroxy-acid dehydratase 0.71 14
Rhizobium sp. OAE497 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase 0.64 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) 0.39 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) — —
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase 0.27 CA265_RS15795 dihydroxy-acid dehydratase — —
Agrobacterium fabrum C58 0.23 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase 0.28 CA264_06935 dihydroxy-acid dehydratase low > 74
Pseudomonas simiae WCS417 0.21 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 PS417_26890 dihydroxy-acid dehydratase 0.81 13
Lysobacter sp. OAE881 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase — —
Bifidobacterium breve UCC2003 0.17 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase 0.56 BBR_RS17635 dihydroxy-acid dehydratase low > 34
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase 0.90 32
Mycobacterium tuberculosis H37Rv 0.17 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —
Rhodanobacter sp. FW510-T8 0.17 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase — —
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.72 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.75 39
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans MT42 0.16 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodopseudomonas palustris CGA009 0.16 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Dinoroseobacter shibae DFL-12 0.15 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.31 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Sinorhizobium meliloti 1021 0.15 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 SMc04045 dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.15 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Magnetospirillum magneticum AMB-1 0.15 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase 0.73 AMB_RS12770 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans FW104-10B01 0.15 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase — —
Phaeobacter inhibens DSM 17395 0.15 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase 0.25 A4249_RS10030 dihydroxy-acid dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase — —
Caulobacter crescentus NA1000 Δfur 0.14 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Caulobacter crescentus NA1000 0.14 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.13 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Azospirillum brasilense Sp245 0.12 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Azospirillum sp. SherDot2 0.12 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —

Not shown: 2 genomes with orthologs for b0908 only; 17 genomes with orthologs for b3771 only