Homologs of Xcc-8004.5407.1 from Xanthomonas campestris pv. campestris strain 8004

GTPase and tRNA-U34 5-formylation enzyme TrmE
SEED: GTPase and tRNA-U34 5-formylation enzyme TrmE
KEGG: tRNA modification GTPase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE insig. 100 100
o Lysobacter sp. OAE881 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE cofit 69 99
o Rhodanobacter sp. FW510-T8 OKGIIK_15285 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE insig. 56 100
o Pseudomonas stutzeri RCH2 Psest_4373 tRNA modification GTPase TrmE no data 53 100
o Pseudomonas aeruginosa PA14 IKLFDK_25575 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 53 100
o Acinetobacter radioresistens SK82 MPMX26_03070 tRNA modification GTPase MnmE strong 51 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE cofit 55 96
o Pseudomonas sp. S08-1 OH686_12655 tRNA modification GTPase TrmE no data 52 100
o Rhodanobacter denitrificans MT42 LRK55_RS08270 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE insig. 56 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS08505 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE insig. 56 96
o Acinetobacter baumannii LAC-4 RR41_RS19010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 52 99
o Pseudomonas sp. SVBP6 COO64_RS02085 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 52 100
o Pseudomonas segetis P6 MPMX49_00248 tRNA modification GTPase MnmE no data 50 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 49 99
o Pseudomonas syringae pv. syringae B728a Psyr_5133 tRNA modification GTPase trmE strong 50 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_5133 tRNA modification GTPase trmE strong 50 100
o Pseudomonas simiae WCS417 PS417_28540 tRNA modification GTPase MnmE no data 51 100
o Dickeya dianthicola ME23 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE cofit 51 99
o Pseudomonas putida KT2440 PP_0005 GTPase no data 50 100
o Erwinia amylovora T8 OLJFJH_05190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 51 99
o Pseudomonas fluorescens SBW25 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE cofit 50 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 50 100
o Pseudomonas sp. BP01 JOY50_RS08375 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 49 100
o Kangiella aquimarina DSM 16071 B158DRAFT_0373 tRNA modification GTPase TrmE strong 47 99
o Serratia liquefaciens MT49 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE sig. 50 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE no data 50 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00178 tRNA modification GTPase MnmE no data 51 100
o Pseudomonas fluorescens FW300-N2C3 AO356_11660 tRNA modification GTPase MnmE no data 50 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS02290 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE insig. 55 96
o Pectobacterium carotovorum WPP14 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE sig. 50 99
o Pseudomonas sp. DMC3 GFF573 tRNA modification GTPase MnmE no data 49 100
o Pseudomonas fluorescens FW300-N2E3 AO353_10455 tRNA modification GTPase MnmE strong 49 100
o Klebsiella michiganensis M5al BWI76_RS00050 tRNA modification GTPase no data 49 99
o Pseudomonas sp. RS175 PFR28_04588 tRNA modification GTPase MnmE no data 50 100
o Dickeya dadantii 3937 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE cofit 50 99
o Marinobacter adhaerens HP15 HP15_3698 tRNA modification GTPase TrmE no data 48 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE no data 50 100
o Enterobacter sp. TBS_079 MPMX20_04650 tRNA modification GTPase MnmE strong 49 99
o Dickeya dianthicola 67-19 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 50 99
o Rahnella sp. WP5 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 50 99
o Escherichia coli ECOR27 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE sig. 49 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE no data 50 100
o Escherichia coli BL21 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase sig. 49 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04346 tRNA modification GTPase MnmE no data 49 99
o Escherichia fergusonii Becca EFB2_04925 tRNA modification GTPase MnmE cofit 49 99
o Escherichia coli Nissle 1917 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 49 99
o Klebsiella pneumoniae MKP103 KDGMDA_08700 tRNA modification GTPase MnmE strong 50 99
o Escherichia coli ECRC100 OKFHMN_14985 tRNA modification GTPase MnmE no data 49 99
o Escherichia coli ECRC101 MCAODC_05495 tRNA modification GTPase MnmE no data 49 99
o Escherichia coli ECRC102 NIAGMN_12740 tRNA modification GTPase MnmE no data 49 99
o Escherichia coli ECRC98 JDDGAC_18605 tRNA modification GTPase MnmE no data 49 99
o Escherichia coli ECRC99 KEDOAH_13165 tRNA modification GTPase MnmE no data 49 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE strong 49 99
o Escherichia coli ECOR38 HEPCGN_13680 tRNA modification GTPase MnmE strong 49 99
o Escherichia coli ECRC62 BNILDI_04405 tRNA modification GTPase MnmE strong 49 99
o Escherichia coli BW25113 b3706 trmE tRNA modification GTPase (NCBI) strong 49 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS19345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 50 99
o Methylophilus sp. DMC18 GFF2105 tRNA modification GTPase MnmE cofit 46 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2437 GTPase and tRNA-U34 5-formylation enzyme TrmE no data 50 98
o Enterobacter asburiae PDN3 EX28DRAFT_3993 tRNA modification GTPase TrmE no data 49 99
o Ralstonia solanacearum GMI1000 RS_RS00020 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 52 98
o Pantoea sp. MT58 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE insig. 49 99
o Castellaniella sp019104865 MT123 ABCV34_RS11895 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 50 100
o Alteromonas macleodii MIT1002 MIT1002_04128 tRNA modification GTPase MnmE no data 48 99
o Erwinia tracheiphila SCR3 LU632_RS25300 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 48 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_09755 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 48 99
o Ralstonia solanacearum PSI07 RPSI07_RS23950 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 52 98
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 51 98
o Ralstonia solanacearum UW163 UW163_RS04170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 51 98
o Shewanella sp. ANA-3 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) strong 47 99
o Burkholderia phytofirmans PsJN BPHYT_RS19830 tRNA modification GTPase TrmE no data 50 98
o Shewanella loihica PV-4 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) no data 47 99
o Shewanella oneidensis MR-1 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) strong 47 99
o Shewanella amazonensis SB2B Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) no data 47 99
o Herbaspirillum seropedicae SmR1 HSERO_RS21670 tRNA modification GTPase TrmE no data 48 99
o Paraburkholderia graminis OAS925 ABIE53_000332 tRNA modification GTPase no data 49 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 49 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS05350 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 50 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02320 tRNA modification GTPase trmE no data 49 98
o Cupriavidus basilensis FW507-4G11 RR42_RS20805 tRNA modification GTPase TrmE no data 47 99
o Variovorax sp. OAS795 ABID97_RS02655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 48 98
o Dechlorosoma suillum PS Dsui_0837 tRNA modification GTPase TrmE strong 48 99
o Acidovorax sp. GW101-3H11 Ac3H11_4264 GTPase and tRNA-U34 5-formylation enzyme TrmE strong 46 98
o Variovorax sp. SCN45 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE no data 47 98
o Caulobacter crescentus NA1000 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase strong 42 99
o Caulobacter crescentus NA1000 Δfur CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase cofit 42 99
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06625 tRNA modification GTPase no data 36 99
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02725 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 36 100
o Rhizobium sp. OAE497 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE sig. 43 99
o Agrobacterium fabrum C58 Atu2832 tRNA modification GTPase strong 40 99
o Magnetospirillum magneticum AMB-1 AMB_RS00005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 42 99
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS13880 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE strong 34 99
o Desulfovibrio vulgaris Miyazaki F DvMF_0886 trmE tRNA modification GTPase TrmE (RefSeq) insig. 39 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10450 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 36 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3509 tRNA modification GTPase TrmE no data 34 99
o Sinorhizobium meliloti 1021 SMc02797 tRNA modification GTPase TrmE no data 40 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13700 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE cofit 40 99
o Synechocystis sp000284455 PCC 6803 SGL_RS08695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 38 99
o Fusobacterium nucleatum SB010 HUW76_10755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE no data 31 99
o Cellulophaga baltica 18 M666_RS12855 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE insig. 33 99