Homologs of Psyr_0579 from Pseudomonas syringae pv. syringae B728a

RNAse R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 89 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 89 100
o Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 88 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 87 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 88 100
o Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 87 100
o Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 87 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 87 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 87 100
o Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 88 100
o Pseudomonas orientalis W4I3 QF045_RS05605 ribonuclease R strong 87 100
o Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 87 100
o Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 84 100
o Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 80 99
o Pseudomonas segetis P6 MPMX49_04145 Ribonuclease R strong 80 100
o Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 79 99
o Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 77 100
o Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 77 100
o Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 70 100
o Pseudomonas aeruginosa MRSN321 DY961_RS10465 rnr;go_function=RNA ribonuclease R strong 70 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS51590 rnr;go_function=RNA ribonuclease R strong 70 100
o Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 54 86
o Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 52 91
o Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 52 93
o Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 53 86
o Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 53 86
o Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 53 86
o Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 53 86
o Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 53 86
o Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 53 86
o Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 51 93
o Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 53 86
o Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R insig. 53 86
o Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 53 86
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 53 86
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11220 ribonuclease R cofit 51 92
o Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 53 86
o Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 53 86
o Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 51 92
o Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 53 86
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 53 86
o Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 53 87
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 51 95
o Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 51 95
o Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 53 90
o Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 51 92
o Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 52 86
o Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 52 86
o Serratia liquefaciens MT49 IAI46_01660 ribonuclease R strong 50 97
o Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 49 96
o Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 50 98
o Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 52 91
o Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 50 97
o Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 47 99
o Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 51 87
o Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 51 90
o Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 51 85
o Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 51 88
o Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 47 97
o Methylophilus sp. DMC18 GFF635 Ribonuclease R insig. 46 99
o Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 47 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 51 83
o Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 50 86
o Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 48 88
o Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 51 83
o Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 49 87
o Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 50 83
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 50 83
o Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 50 83
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 50 83
o Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 50 83
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 48 90
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 49 87
o Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 48 89
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 48 89
o Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 50 84
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 48 87
o Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 48 85
o Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 48 83
  Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 49 75
o Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 48 80
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 48 79
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 47 77
o Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 43 93
o Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 42 91
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 37 83
o Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 36 86
o Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 36 82
o Rhizobium sp. OAE497 ABIE40_RS07350 ribonuclease R insig. 35 86
o Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 36 81
o Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 35 88
o Agrobacterium fabrum C58 Atu1303 exoribonuclease strong 35 81
o Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 37 81
o Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 36 82
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 32 84
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 32 81
o Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 32 81
o Xanthobacter sp. DMC5 GFF1081 Ribonuclease R insig. 34 81