Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3852 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | sig. | 100 | 100 |
o | Pseudomonas fluorescens FW300-N2C3 | AO356_09865 | | histidine kinase | sig. | 98 | 100 |
o | Pseudomonas sp. RS175 | PFR28_04918 | | Phytochrome-like protein cph1 | insig. | 88 | 100 |
o | Pseudomonas sp. DMC3 | GFF1005 | | Phytochrome-like protein cph1 | cofit | 72 | 100 |
o | Pseudomonas simiae WCS417 | PS417_23325 | | histidine kinase | insig. | 74 | 99 |
o | Pseudomonas fluorescens SBW25 | PFLU_RS25130 | | GAF domain-containing protein | insig. | 74 | 99 |
o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS25130 | | GAF domain-containing protein | sig. | 74 | 99 |
o | Pseudomonas syringae pv. syringae B728a | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 71 | 100 |
o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 71 | 100 |
| Pseudomonas syringae pv. syringae B728a | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 49 | 97 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 49 | 97 |
o | Rhodopseudomonas palustris CGA009 | TX73_015620 | | ATP-binding protein | insig. | 34 | 98 |
o | Azospirillum sp. SherDot2 | MPMX19_04272 | | Phytochrome-like protein cph1 | insig. | 36 | 98 |
o | Pseudomonas stutzeri RCH2 | Psest_4345 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 36 | 98 |
| Rhodopseudomonas palustris CGA009 | TX73_015615 | | ATP-binding protein | insig. | 34 | 100 |
o | Synechocystis sp000284455 PCC 6803 | SGL_RS14030 | | ATP-binding protein | cofit | 35 | 96 |
o | Burkholderia phytofirmans PsJN | BPHYT_RS06325 | | ATPase | strong | 36 | 100 |
o | Paraburkholderia sabiae LMG 24235 | QEN71_RS10565 | | ATP-binding protein | cofit | 36 | 100 |
o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08760 | | histidine kinase | strong | 32 | 97 |
o | Pseudomonas sp. BP01 | JOY50_RS10835 | | ATP-binding protein | insig. | 34 | 98 |
o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01748 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 35 | 98 |
o | Pseudomonas putida KT2440 | PP_2356 | | putative Phytochrome family protein | strong | 33 | 100 |
o | Agrobacterium fabrum C58 | Atu1990 | | bacteriophytochrome protein | insig. | 33 | 98 |
o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03395 | | ATP-binding protein | sig. | 31 | 98 |
o | Variovorax sp. SCN45 | GFF651 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 35 | 98 |
o | Azospirillum brasilense Sp245 | AZOBR_RS30860 | | sensor histidine kinase | strong | 36 | 82 |
| Variovorax sp. SCN45 | GFF1412 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 34 | 97 |
o | Herbaspirillum seropedicae SmR1 | HSERO_RS12460 | | light-regulated signal transduction histidine kinase | insig. | 35 | 96 |
| Rhodopseudomonas palustris CGA009 | TX73_000630 | | ATP-binding protein | insig. | 33 | 98 |
o | Pseudomonas aeruginosa PA14 | IKLFDK_21205 | | bacteriophytochrome BphP | insig. | 32 | 96 |
o | Ralstonia sp. UNC404CL21Col | ABZR87_RS02225 | | ATP-binding protein | strong | 32 | 96 |
o | Alteromonas macleodii MIT1002 | MIT1002_03619 | | Phytochrome-like protein cph1 | insig. | 28 | 98 |
o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15480 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 30 | 99 |
| Alteromonas macleodii MIT1002 | MIT1002_02965 | | Phytochrome-like protein cph1 | insig. | 28 | 98 |
o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_05925 | | hypothetical protein | cofit | 28 | 99 |
| Agrobacterium fabrum C58 | Atu2165 | | bacteriophytochrome protein | insig. | 34 | 71 |
| Phaeobacter inhibens DSM 17395 | PGA1_c28680 | | putative bacteriophytochrome | insig. | 31 | 72 |
| Azospirillum brasilense Sp245 | AZOBR_RS30160 | | chemotaxis protein CheY | insig. | 34 | 71 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08315 | | PAS sensor protein | sig. | 33 | 66 |
| Xanthobacter sp. DMC5 | GFF4286 | | Phytochrome-like protein cph1 | insig. | 33 | 71 |
| Rhizobium sp. OAE497 | ABIE40_RS14515 | | HWE histidine kinase domain-containing protein | insig. | 32 | 74 |
| Azospirillum sp. SherDot2 | MPMX19_01598 | | hypothetical protein | insig. | 32 | 76 |
| Lysobacter sp. OAE881 | ABIE51_RS17880 | | GAF domain-containing protein | insig. | 36 | 68 |
| Pseudomonas sp. BP01 | JOY50_RS14150 | | HWE histidine kinase domain-containing protein | insig. | 34 | 71 |
| Rhodopseudomonas palustris CGA009 | TX73_005095 | | HWE histidine kinase domain-containing protein | insig. | 36 | 64 |
| Pseudomonas putida KT2440 | PP_3364 | | Response regulator | insig. | 34 | 66 |
| Bosea sp. OAE506 | ABIE41_RS08275 | | HWE histidine kinase domain-containing protein | insig. | 34 | 71 |
| Rhizobium sp. OAE497 | ABIE40_RS26950 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 28 | 95 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5288.1 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 31 | 71 |
| Magnetospirillum magneticum AMB-1 | AMB_RS16825 | | hypothetical protein | insig. | 32 | 67 |
| Rhodopseudomonas palustris CGA009 | TX73_007660 | | GAF domain-containing protein | cofit | 27 | 97 |
| Rhodospirillum rubrum S1H | Rru_A2235 | | Multi-sensor Signal Transduction Histidine Kinase (NCBI) | strong | 33 | 69 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00090 | | histidine kinase | insig. | 34 | 33 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS01570 | | hypothetical protein | insig. | 29 | 41 |
| Magnetospirillum magneticum AMB-1 | AMB_RS15350 | | PAS domain-containing sensor histidine kinase | insig. | 35 | 33 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS08215 | | PAS domain-containing protein | insig. | 31 | 32 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS19230 | | CheR family methyltransferase | insig. | 37 | 30 |
| Pseudomonas fluorescens SBW25 | PFLU_RS00435 | | PAS domain-containing protein | strong | 35 | 31 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS00435 | | PAS domain-containing protein | strong | 35 | 31 |
| Paraburkholderia graminis OAS925 | ABIE53_001097 | | PAS domain S-box-containing protein | strong | 35 | 32 |
| Marinobacter adhaerens HP15 | HP15_3355 | | multi-sensor signal transduction histidine kinase | strong | 35 | 32 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS11515 | | PAS domain S-box protein | cofit | 31 | 31 |
| Pseudomonas simiae WCS417 | PS417_00445 | | histidine kinase | sig. | 35 | 31 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_2483 | | multi-sensor hybrid histidine kinase (RefSeq) | insig. | 34 | 33 |
| Rhizobium sp. OAE497 | ABIE40_RS13880 | | response regulator | insig. | 33 | 32 |
| Pseudomonas stutzeri RCH2 | Psest_4295 | | PAS domain S-box | insig. | 33 | 32 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS12465 | | histidine kinase | insig. | 35 | 31 |
| Pseudomonas aeruginosa PA14 | IKLFDK_04170 | | two-component system sensor histidine kinase GacS | cofit | 33 | 32 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS05240 | | PAS domain-containing sensor histidine kinase | insig. | 31 | 31 |
| Pseudomonas sp. S08-1 | OH686_18945 | | Signal transduction histidine-protein kinase BarA | strong | 33 | 32 |
| Pseudomonas sp. S08-1 | OH686_06285 | | Two-component system sensor histidine kinase | insig. | 34 | 33 |
| Alteromonas macleodii MIT1002 | MIT1002_00770 | | Signal transduction histidine-protein kinase BarA | insig. | 35 | 32 |
| Shewanella oneidensis MR-1 | SO1559 | phoR | phosphate regulon sensor protein PhoR (NCBI ptt file) | sig. | 36 | 32 |
| Paraburkholderia graminis OAS925 | ABIE53_005539 | | signal transduction histidine kinase/CheY-like chemotaxis protein | insig. | 33 | 36 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS06945 | | hypothetical protein | insig. | 30 | 33 |
| Azospirillum sp. SherDot2 | MPMX19_06088 | | Sensor histidine kinase RcsC | insig. | 36 | 30 |
| Klebsiella michiganensis M5al | BWI76_RS01600 | | sensor protein ZraS | insig. | 35 | 31 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS14395 | | hypothetical protein | insig. | 30 | 31 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS05700 | | PAS domain S-box protein | insig. | 29 | 32 |
| Pseudomonas sp. SVBP6 | COO64_RS02520 | | KinB sensor domain-containing domain | insig. | 33 | 31 |
| Rhodopseudomonas palustris CGA009 | TX73_001645 | | ATP-binding protein | insig. | 38 | 30 |
| Methylophilus sp. DMC18 | GFF2718 | | Phosphate regulon sensor protein PhoR | cofit | 35 | 31 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU3058 | | sensory box histidine kinase/response regulator (TIGR) | insig. | 35 | 32 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21460 | | PAS domain-containing protein | insig. | 31 | 31 |
| Shewanella sp. ANA-3 | Shewana3_2878 | | PAS/PAC sensor signal transduction histidine kinase (RefSeq) | insig. | 36 | 32 |
| Dechlorosoma suillum PS | Dsui_2251 | | signal transduction histidine kinase | cofit | 35 | 30 |
| Pseudomonas stutzeri RCH2 | Psest_1635 | | Signal transduction histidine kinase | strong | 32 | 32 |
| Acinetobacter radioresistens SK82 | MPMX26_02959 | | Phosphate regulon sensor protein PhoR | strong | 32 | 42 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1131 | | response regulator receiver sensor signal transduction histidine kinase (RefSeq) | cofit | 35 | 30 |
| Dechlorosoma suillum PS | Dsui_1865 | | PAS domain S-box | cofit | 31 | 33 |
| Parabacteroides merdae CL09T00C40 | HMPREF1078_RS05025 | | PAS domain-containing sensor histidine kinase | insig. | 32 | 33 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4856 | | Signal transduction histidine kinase | insig. | 33 | 33 |
| Pseudomonas sp. BP01 | JOY50_RS23885 | | response regulator | cofit | 31 | 32 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS12335 | | hypothetical protein | insig. | 31 | 33 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06202 | | PAS domain S-box-containing protein | insig. | 34 | 33 |
| Pseudomonas simiae WCS417 | PS417_16370 | | chemotaxis protein CheY | strong | 32 | 32 |
| Shewanella loihica PV-4 | Shew_3200 | | multi-sensor hybrid histidine kinase (RefSeq) | insig. | 31 | 42 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_2029 | | BarA sensory histidine kinase (= VarS = GacS) | strong | 31 | 32 |
| Pseudomonas putida KT2440 | PP_1650 | | Sensor protein GacS | strong | 31 | 32 |
| Shewanella oneidensis MR-1 | SO0859 | | sensory box histidine kinase/response regulator (NCBI ptt file) | insig. | 36 | 30 |