Homologs of PP_4985 from Pseudomonas putida KT2440

16S rRNA m3U1498 methyltransferase
SEED: Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)
KEGG: ribosomal RNA small subunit methyltransferase E

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4985 16S rRNA m3U1498 methyltransferase sig. 100 100
o Pseudomonas sp. BP01 JOY50_RS09765 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 95 100
o Pseudomonas sp. SVBP6 COO64_RS13645 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 89 100
o Pseudomonas fluorescens FW300-N2C3 AO356_13565 16S rRNA methyltransferase sig. 85 100
o Pseudomonas sp. S08-1 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 87 100
o Pseudomonas sp. RS175 PFR28_04209 Ribosomal RNA small subunit methyltransferase E sig. 84 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) strong 85 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) no data 84 100
o Pseudomonas sp. DMC3 GFF180 Ribosomal RNA small subunit methyltransferase E cofit 83 100
o Pseudomonas fluorescens FW300-N2E3 AO353_08050 16S rRNA methyltransferase strong 82 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05440 Ribosomal RNA small subunit methyltransferase E cofit 82 100
o Pseudomonas orientalis W4I3 QF045_RS00940 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 82 100
o Pseudomonas fluorescens SBW25 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase cofit 81 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase sig. 81 100
o Pseudomonas simiae WCS417 PS417_26545 16S rRNA methyltransferase strong 80 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) sig. 81 100
o Pseudomonas syringae pv. syringae B728a Psyr_0453 16S rRNA m(3)U-1498 methyltransferase insig. 81 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0453 16S rRNA m(3)U-1498 methyltransferase insig. 81 100
o Pseudomonas aeruginosa MRSN321 DY961_RS22075 16S rRNA (uracil(1498)-N(3))-methyltransferase sig. 82 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS37225 16S rRNA (uracil(1498)-N(3))-methyltransferase sig. 82 100
o Pseudomonas aeruginosa PA14 IKLFDK_23325 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 81 100
o Pseudomonas segetis P6 ACVTMO_RS03135 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 81 100
o Pseudomonas stutzeri RCH2 Psest_0305 RNA methyltransferase, RsmE family sig. 79 100
o Alteromonas macleodii MIT1002 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E cofit 45 100
o Rahnella sp. WP5 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 47 100
o Marinobacter adhaerens HP15 HP15_2926 ribosomal RNA small subunit methyltransferase E cofit 47 100
o Shewanella amazonensis SB2B Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) insig. 46 100
o Dickeya dadantii 3937 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 47 100
o Dickeya dianthicola ME23 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 46 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_03425 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 44 100
o Erwinia tracheiphila SCR3 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase cofit 44 100
o Dickeya dianthicola 67-19 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Pectobacterium carotovorum WPP14 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 44 100
o Shewanella oneidensis MR-1 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) strong 44 100
o Shewanella sp. ANA-3 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) insig. 43 100
o Rhodanobacter denitrificans MT42 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase no data 50 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase strong 50 93
o Escherichia coli BL21 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent cofit 45 100
o Escherichia fergusonii Becca EFB2_00956 Ribosomal RNA small subunit methyltransferase E insig. 45 100
o Escherichia coli ECOR27 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli ECOR38 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E insig. 45 100
o Escherichia coli ECRC100 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli ECRC101 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli ECRC102 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli ECRC62 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli ECRC98 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli ECRC99 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase no data 45 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E insig. 45 100
o Escherichia coli Nissle 1917 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Escherichia coli BW25113 b2946 yggJ orf, hypothetical protein (VIMSS) strong 45 100
o Methylophilus sp. DMC18 GFF2490 Ribosomal RNA small subunit methyltransferase E insig. 47 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) insig. 45 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16075 16S rRNA (uracil(1498)-N(3))-methyltransferase cofit 44 100
o Acinetobacter radioresistens SK82 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E cofit 46 96
o Acinetobacter baumannii LAC-4 RR41_RS05720 16S rRNA (uracil(1498)-N(3))-methyltransferase sig. 48 96
o Shewanella loihica PV-4 Shew_3224 hypothetical protein (RefSeq) strong 44 100
o Pantoea sp. MT58 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase cofit 43 100
o Serratia liquefaciens MT49 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Erwinia amylovora T8 OLJFJH_08575 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 43 100
o Kangiella aquimarina DSM 16071 B158DRAFT_0180 RNA methyltransferase, RsmE family insig. 40 100
o Enterobacter sp. TBS_079 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E sig. 43 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 45 100
o Enterobacter asburiae PDN3 EX28DRAFT_2984 RNA methyltransferase, RsmE family insig. 43 100
o Klebsiella michiganensis M5al BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase strong 43 100
o Rhodanobacter sp. FW510-T8 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 48 93
o Klebsiella pneumoniae MRSN742743 KFA93_RS12130 rsmE;go_function=methyltransferase 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 43 100
o Klebsiella pneumoniae MKP103 KDGMDA_04585 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 43 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase sig. 46 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS05765 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 47 93
o Lysobacter sp. OAE881 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 43 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) no data 42 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase strong 42 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 42 100
o Ralstonia solanacearum UW163 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 42 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 41 99
o Acidovorax sp. GW101-3H11 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) strong 44 92
o Ralstonia solanacearum PSI07 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 41 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase insig. 39 99
o Ralstonia solanacearum GMI1000 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase insig. 43 100
o Burkholderia phytofirmans PsJN BPHYT_RS16855 16S rRNA methyltransferase strong 38 99
o Cupriavidus basilensis FW507-4G11 RR42_RS17590 16S rRNA methyltransferase insig. 40 98
o Dechlorosoma suillum PS Dsui_1568 RNA methyltransferase, RsmE family no data 47 93
o Paraburkholderia graminis OAS925 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase strong 38 99
o Herbaspirillum seropedicae SmR1 HSERO_RS07110 16S rRNA methyltransferase sig. 40 99
o Variovorax sp. SCN45 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) insig. 39 92
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) cofit 39 90
o Castellaniella sp019104865 MT123 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase strong 40 92
  Synechococcus elongatus PCC 7942 Synpcc7942_0806 hypothetical protein cofit 37 88
  Synechocystis sp000284455 PCC 6803 SGL_RS02335 16S rRNA (uracil(1498)-N(3))-methyltransferase sig. 33 89
  Azospirillum sp. SherDot2 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E insig. 32 99
  Fusobacterium nucleatum SB010 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase cofit 29 87
  Bacteroides ovatus ATCC 8483 BACOVA_05130 RNA methyltransferase, RsmE family insig. 32 89
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0807 RNA methyltransferase, RsmE family insig. 33 98
  Azospirillum brasilense Sp245 AZOBR_RS11890 16S rRNA methyltransferase sig. 32 99
  Rhizobium sp. OAE497 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase cofit 32 92
  Dinoroseobacter shibae DFL-12 Dshi_3099 protein of unknown function DUF558 (RefSeq) sig. 32 98
  Xanthobacter sp. DMC5 GFF1000 Ribosomal RNA small subunit methyltransferase E insig. 32 92
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17085 16S rRNA (uracil(1498)-N(3))-methyltransferase strong 30 87
  Bacteroides thetaiotaomicron VPI-5482 BT4328 conserved hypothetical protein (NCBI ptt file) insig. 30 92
  Agrobacterium fabrum C58 Atu0657 hypothetical protein strong 32 91