Homologs of PP_2084 from Pseudomonas putida KT2440

Putative regulator of ribonuclease activity
SEED: Ribonuclease E inhibitor RraA
KEGG: regulator of ribonuclease activity A

183 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_2084 Putative regulator of ribonuclease activity sig. 100 100
o Pseudomonas sp. BP01 JOY50_RS22160 rraA ribonuclease E activity regulator RraA insig. 99 100
o Pseudomonas sp. RS175 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase strong 91 100
o Pseudomonas simiae WCS417 PS417_21010 ribonuclease activity regulator protein RraA strong 91 100
o Pseudomonas fluorescens SBW25 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase strong 90 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase strong 90 100
o Pseudomonas fluorescens FW300-N2C3 AO356_02815 ribonuclease activity regulator protein RraA sig. 90 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2387 Ribonuclease E inhibitor RraA sig. 88 100
o Pseudomonas orientalis W4I3 QF045_RS22835 ribonuclease E activity regulator RraA insig. 88 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04347 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase cofit 88 100
o Pseudomonas sp. DMC3 GFF5238 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase cofit 88 100
o Pseudomonas fluorescens FW300-N2E3 AO353_00850 ribonuclease activity regulator protein RraA sig. 87 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4110 Ribonuclease E inhibitor RraA strong 87 100
o Pseudomonas aeruginosa PA14 IKLFDK_08565 ribonuclease E activity regulator RraA sig. 88 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS54630 rraA;go_function=ribonuclease ribonuclease E activity regulator RraA strong 88 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3828 Ribonuclease E inhibitor RraA strong 86 100
o Pseudomonas aeruginosa MRSN321 DY961_RS20550 rraA;go_function=ribonuclease ribonuclease E activity regulator RraA insig. 88 99
o Pseudomonas sp. SVBP6 COO64_RS05370 rraA ribonuclease E activity regulator RraA insig. 89 99
o Pseudomonas stutzeri RCH2 Psest_2315 RraA famliy insig. 88 99
o Pseudomonas sp. S08-1 OH686_01650 Ribonuclease E inhibitor RraA strong 86 99
o Pseudomonas syringae pv. syringae B728a Psyr_2092 Protein of unknown function 1935 sig. 84 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2092 Protein of unknown function 1935 insig. 84 99
o Pseudomonas segetis P6 ACVTMO_RS13005 rraA ribonuclease E activity regulator RraA insig. 84 99
o Marinobacter adhaerens HP15 HP15_2228 ribonuclease activity regulator protein RraA strong 68 98
o Shewanella sp. ANA-3 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) sig. 57 98
o Shewanella loihica PV-4 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) no data 58 98
o Shewanella oneidensis MR-1 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) strong 57 98
o Shewanella amazonensis SB2B Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) strong 55 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_13500 ribonuclease E activity regulator RraA insig. 55 97
o Dechlorosoma suillum PS Dsui_0010 RraA family protein cofit 57 96
o Escherichia coli BL21 ECD_03814 ribonuclease E (RNase E) inhibitor protein insig. 56 97
o Escherichia fergusonii Becca EFB2_04689 Regulator of ribonuclease activity A insig. 56 97
o Escherichia coli ECOR27 NOLOHH_05895 rraA ribonuclease E activity regulator RraA insig. 56 97
o Escherichia coli ECOR38 HEPCGN_12395 rraA ribonuclease E activity regulator RraA sig. 56 97
o Escherichia coli ECRC100 OKFHMN_13750 rraA ribonuclease E activity regulator RraA cofit 56 97
o Escherichia coli ECRC101 MCAODC_04250 rraA ribonuclease E activity regulator RraA insig. 56 97
o Escherichia coli ECRC102 NIAGMN_11505 rraA ribonuclease E activity regulator RraA cofit 56 97
o Escherichia coli ECRC62 BNILDI_05635 rraA ribonuclease E activity regulator RraA insig. 56 97
o Escherichia coli ECRC98 JDDGAC_17375 rraA ribonuclease E activity regulator RraA insig. 56 97
o Escherichia coli ECRC99 KEDOAH_14410 rraA ribonuclease E activity regulator RraA no data 56 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04122 Regulator of ribonuclease activity A insig. 56 97
o Escherichia coli Nissle 1917 ECOLIN_RS22625 ribonuclease E activity regulator RraA insig. 56 97
o Escherichia coli BW25113 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) strong 56 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2311 Ribonuclease E inhibitor RraA strong 56 97
o Acinetobacter radioresistens SK82 MPMX26_01316 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 54 96
o Serratia liquefaciens MT49 IAI46_24585 ribonuclease E activity regulator RraA cofit 54 97
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12975 rraA ribonuclease E activity regulator RraA insig. 54 97
o Erwinia tracheiphila SCR3 LU632_RS19685 rraA ribonuclease E activity regulator RraA insig. 54 97
o Enterobacter asburiae PDN3 EX28DRAFT_4402 regulator of ribonuclease activity A insig. 56 97
o Rahnella sp. WP5 EX31_RS14255 ribonuclease E activity regulator RraA insig. 55 97
o Enterobacter sp. TBS_079 MPMX20_04540 Regulator of ribonuclease activity A insig. 55 97
o Klebsiella michiganensis M5al BWI76_RS00740 ribonuclease E activity regulator RraA sig. 55 98
o Klebsiella pneumoniae MKP103 KDGMDA_09250 ribonuclease E activity regulator RraA insig. 54 97
o Klebsiella pneumoniae MRSN742743 KFA93_RS22725 rraA;go_function=ribonuclease ribonuclease E activity regulator RraA insig. 54 97
o Acinetobacter baumannii LAC-4 RR41_RS12280 ribonuclease E activity regulator RraA no data 54 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA insig. 53 97
o Pectobacterium carotovorum WPP14 HER17_RS00840 ribonuclease E activity regulator RraA insig. 52 97
o Dickeya dadantii 3937 DDA3937_RS00905 ribonuclease E activity regulator RraA insig. 53 98
o Dickeya dianthicola 67-19 HGI48_RS20470 ribonuclease E activity regulator RraA insig. 53 98
o Dickeya dianthicola ME23 DZA65_RS21515 ribonuclease E activity regulator RraA insig. 52 98
  Vibrio cholerae E7946 ATCC 55056 CSW01_11990 ribonuclease activity regulator protein RraA insig. 50 98
  Shewanella loihica PV-4 Shew_2117 ribonuclease activity regulator protein RraA (RefSeq) no data 52 96
o Alteromonas macleodii MIT1002 MIT1002_00164 Regulator of ribonuclease activity A cofit 50 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS06240 ribonuclease E activity regulator RraA insig. 49 96
  Shewanella amazonensis SB2B Sama_1888 ribonuclease activity regulator protein RraA (RefSeq) sig. 49 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18500 ribonuclease E activity regulator RraA cofit 55 98
o Pantoea sp. MT58 IAI47_00840 ribonuclease E activity regulator RraA insig. 54 98
o Azospirillum brasilense Sp245 AZOBR_RS17130 ribonuclease no data 54 91
o Lysobacter sp. OAE881 ABIE51_RS04140 ribonuclease E activity regulator RraA no data 50 95
o Erwinia amylovora T8 OLJFJH_06055 ribonuclease E activity regulator RraA sig. 53 98
o Cupriavidus basilensis FW507-4G11 RR42_RS12215 ribonuclease insig. 51 96
  Shewanella sp. ANA-3 Shewana3_2373 ribonuclease activity regulator protein RraA (RefSeq) strong 52 96
  Shewanella oneidensis MR-1 SO2567 menG-1 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) insig. 50 96
o Herbaspirillum seropedicae SmR1 HSERO_RS10555 ribonuclease insig. 49 96
o Burkholderia phytofirmans PsJN BPHYT_RS12315 ribonuclease no data 48 96
o Acidovorax sp. GW101-3H11 Ac3H11_2834 Ribonuclease E inhibitor RraA insig. 51 96
o Ralstonia solanacearum PSI07 RPSI07_RS17355 ribonuclease E inhibitor RraA insig. 50 95
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS00130 ribonuclease insig. 50 93
o Ralstonia solanacearum UW163 UW163_RS13460 ribonuclease insig. 50 93
o Ralstonia sp. UNC404CL21Col ABZR87_RS11580 ribonuclease E activity regulator RraA insig. 48 94
o Azospirillum sp. SherDot2 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 49 93
o Ralstonia solanacearum GMI1000 RS_RS06790 ribonuclease E inhibitor RraA insig. 50 94
o Mycobacterium tuberculosis H37Rv Rv3853 Regulator of RNase E activity a RraA sig. 44 91
o Variovorax sp. SCN45 GFF4367 KEGG: regulator of ribonuclease activity A no data 41 94
  Paraburkholderia graminis OAS925 ABIE53_006318 RraA family protein insig. 38 75
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06356 RraA famliy insig. 37 75
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2963 Dimethylmenaquinone methyltransferase family protein insig. 32 95
  Enterobacter sp. TBS_079 MPMX20_04390 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase insig. 35 77
  Enterobacter asburiae PDN3 EX28DRAFT_4072 Demethylmenaquinone methyltransferase insig. 35 77
  Ralstonia solanacearum PSI07 RPSI07_RS02810 RraA family protein insig. 36 81
  Pseudomonas fluorescens SBW25 PFLU_RS11340 RraA family protein insig. 33 84
  Pseudomonas fluorescens SBW25-INTG PFLU_RS11340 RraA family protein insig. 33 84
  Variovorax sp. SCN45 GFF3058 Demethylmenaquinone methyltransferase-like protein insig. 35 77
  Dickeya dianthicola 67-19 HGI48_RS07585 RraA family protein no data 36 74
  Ralstonia solanacearum GMI1000 RS_RS21640 RraA family protein insig. 35 81
  Dickeya dianthicola ME23 DZA65_RS08135 RraA family protein insig. 36 74
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05962 RraA famliy insig. 33 77
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS14360 RraA family protein cofit 36 61
  Pantoea sp. MT58 IAI47_20770 RraA family protein insig. 36 61
  Variovorax sp. OAS795 ABID97_RS27645 RraA family protein no data 33 77
  Klebsiella michiganensis M5al BWI76_RS26545 dimethylmenaquinone methyltransferase insig. 32 76
  Methanococcus maripaludis S2 MMP_RS06530 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator strong 32 79
  Pseudomonas segetis P6 ACVTMO_RS20280 RraA family protein insig. 34 69
  Pseudomonas fluorescens FW300-N2E3 AO353_07830 dimethylmenaquinone methyltransferase insig. 29 84
  Cupriavidus basilensis FW507-4G11 RR42_RS34615 dimethylmenaquinone methyltransferase no data 33 75
  Variovorax sp. SCN45 GFF748 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) no data 38 71
  Sphingobium sp. HT1-2 GFF2871 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) insig. 31 87
  Dickeya dadantii 3937 DDA3937_RS07770 RraA family protein sig. 35 74
  Methanococcus maripaludis JJ MMJJ_RS07820 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator sig. 31 79
  Burkholderia phytofirmans PsJN BPHYT_RS30330 hypothetical protein no data 36 75
  Pseudomonas simiae WCS417 PS417_19020 dimethylmenaquinone methyltransferase sig. 31 90
  Pseudomonas fluorescens SBW25 PFLU_RS21075 RraA family protein insig. 30 91
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21075 RraA family protein insig. 30 91
  Pseudomonas sp. BP01 JOY50_RS05170 RraA family protein no data 29 90
  Herbaspirillum seropedicae SmR1 HSERO_RS22260 diguanylate cyclase no data 29 62
  Agrobacterium fabrum C58 Atu5329 hypothetical protein no data 27 68
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0524 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 34 85
  Cupriavidus basilensis FW507-4G11 RR42_RS26535 diguanylate cyclase insig. 32 67
  Azospirillum brasilense Sp245 AZOBR_RS26905 hypothetical protein insig. 33 85
  Paraburkholderia sabiae LMG 24235 QEN71_RS10100 ribonuclease activity regulator RraA insig. 36 66
  Sinorhizobium meliloti 1021 SMc00502 hypothetical protein insig. 35 69
  Variovorax sp. SCN45 GFF1496 Demethylmenaquinone methyltransferase-like protein no data 30 77
  Paraburkholderia graminis OAS925 ABIE53_005332 regulator of RNase E activity RraA insig. 31 91
  Variovorax sp. OAS795 ABID97_RS27355 RraA family protein insig. 33 75
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2330 Demethylmenaquinone methyltransferase insig. 33 87
  Cupriavidus basilensis FW507-4G11 RR42_RS27210 hypothetical protein insig. 35 87
  Ralstonia solanacearum PSI07 RPSI07_RS05660 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase no data 30 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03423 Regulator of RNase E activity RraA no data 36 66
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01718 4-carboxy-4-hydroxy-2-oxoadipate aldolase cofit 31 75
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01710 Regulator of ribonuclease activity A cofit 27 88
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS17940 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 31 83
  Ralstonia solanacearum UW163 UW163_RS21200 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 31 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06498 Regulator of RNase E activity RraA insig. 30 67
  Rahnella sp. WP5 EX31_RS10205 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 32 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_178 Demethylmenaquinone methyltransferase no data 32 87
  Desulfovibrio vulgaris Miyazaki F DvMF_2302 Dimethylmenaquinone methyltransferase (RefSeq) insig. 29 67
  Ralstonia solanacearum GMI1000 RS_RS23080 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 30 83
  Ralstonia sp. UNC404CL21Col ABZR87_RS17530 diguanylate cyclase no data 33 68
  Herbaspirillum seropedicae SmR1 HSERO_RS22295 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 32 75
  Paraburkholderia sabiae LMG 24235 QEN71_RS19630 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase no data 31 88
  Azospirillum brasilense Sp245 AZOBR_RS25265 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 31 69
  Variovorax sp. SCN45 GFF4160 Demethylmenaquinone methyltransferase-like protein insig. 34 70
  Azospirillum brasilense Sp245 AZOBR_RS33695 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 31 76
  Cupriavidus basilensis FW507-4G11 RR42_RS28415 diguanylate cyclase insig. 37 61
  Variovorax sp. OAS795 ABID97_RS01300 ribonuclease activity regulator RraA insig. 33 69
  Azospirillum brasilense Sp245 AZOBR_RS00160 demethylmenaquinone methyltransferase no data 33 69
  Variovorax sp. SCN45 GFF623 Demethylmenaquinone methyltransferase-like protein insig. 30 70
  Rhizobium sp. OAE497 ABIE40_RS26445 ribonuclease activity regulator RraA insig. 33 61
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03419 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) insig. 30 87
  Serratia liquefaciens MT49 IAI46_17475 RraA family protein insig. 29 58
  Paraburkholderia graminis OAS925 ABIE53_005328 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 31 85
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5061 Demethylmenaquinone methyltransferase no data 33 67
  Rhodopseudomonas palustris CGA009 TX73_024410 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase sig. 35 64
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3799 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) sig. 27 86
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13035 RraA family protein insig. 33 56
  Ralstonia solanacearum PSI07 RPSI07_RS06345 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase cofit 33 66
  Castellaniella sp019104865 MT123 ABCV34_RS02805 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 36 66
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04047 hypothetical protein cofit 31 60
  Variovorax sp. SCN45 GFF7259 no description insig. 30 65
  Cupriavidus basilensis FW507-4G11 RR42_RS35295 diguanylate cyclase insig. 28 75
  Acidovorax sp. GW101-3H11 Ac3H11_143 Demethylmenaquinone methyltransferase insig. 28 61
  Magnetospirillum magneticum AMB-1 AMB_RS01280 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase cofit 33 67
  Cupriavidus basilensis FW507-4G11 RR42_RS26225 dimethylmenaquinone methyltransferase no data 29 87
  Pseudomonas syringae pv. syringae B728a Psyr_3070 Dimethylmenaquinone methyltransferase insig. 29 63
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3070 Dimethylmenaquinone methyltransferase insig. 29 63
  Alteromonas macleodii MIT1002 MIT1002_03744 4-hydroxy-2-oxoglutarate aldolase strong 27 80
  Pseudomonas syringae pv. syringae B728a Psyr_2595 Dimethylmenaquinone methyltransferase insig. 29 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2595 Dimethylmenaquinone methyltransferase insig. 29 85
  Burkholderia phytofirmans PsJN BPHYT_RS24290 hypothetical protein insig. 32 75
  Bosea sp. OAE506 ABIE41_RS16525 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase insig. 30 75
  Xanthobacter sp. DMC5 GFF42 hypothetical protein insig. 28 74
  Pseudomonas orientalis W4I3 QF045_RS15585 RraA family protein cofit 29 60
  Escherichia coli ECOR38 HEPCGN_01235 dimethylmenaquinone methyltransferase insig. 28 58
  Acidovorax sp. GW101-3H11 Ac3H11_1184 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) insig. 26 86
  Azospirillum sp. SherDot2 MPMX19_00297 4-carboxy-4-hydroxy-2-oxoadipate aldolase insig. 35 52
  Pseudomonas sp. BP01 JOY50_RS04205 RraA family protein insig. 33 58
  Pseudomonas putida KT2440 PP_4462 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 31 71
  Pseudomonas fluorescens FW300-N2C3 AO356_25360 dimethylmenaquinone methyltransferase insig. 34 69
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3472 Bll0377 protein insig. 29 70
  Burkholderia phytofirmans PsJN BPHYT_RS28470 hypothetical protein insig. 32 74
  Variovorax sp. OAS795 ABID97_RS25650 ribonuclease activity regulator RraA sig. 31 72
  Agrobacterium fabrum C58 Atu4285 S-adenosylmethionine:2-demethylmenaquinone methyltransferase insig. 29 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13680 dimethylmenaquinone methyltransferase insig. 27 63