Homologs of HSERO_RS10160 from Herbaspirillum seropedicae SmR1

flagellar biosynthesis sigma factor
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Herbaspirillum seropedicae SmR1 HSERO_RS10160 flagellar biosynthesis sigma factor strong 100 100
o Ralstonia solanacearum GMI1000 RS_RS23830 RNA polymerase sigma factor FliA insig. 60 98
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS17485 RNA polymerase sigma factor FliA insig. 59 98
o Ralstonia solanacearum UW163 UW163_RS21665 RNA polymerase sigma factor FliA insig. 59 98
o Paraburkholderia graminis OAS925 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA strong 59 100
o Ralstonia solanacearum PSI07 RPSI07_RS06165 RNA polymerase sigma factor FliA insig. 58 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 59 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS18040 RNA polymerase sigma factor FliA strong 58 98
o Burkholderia phytofirmans PsJN BPHYT_RS18925 RNA polymerase sigma70 strong 58 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS28940 RNA polymerase sigma factor FliA strong 58 100
o Dechlorosoma suillum PS Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family cofit 58 95
o Cupriavidus basilensis FW507-4G11 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor insig. 56 97
o Variovorax sp. SCN45 GFF5774 RNA polymerase sigma factor for flagellar operon insig. 56 97
o Acidovorax sp. GW101-3H11 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon sig. 53 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1428 RNA polymerase sigma factor for flagellar operon insig. 53 98
o Castellaniella sp019104865 MT123 ABCV34_RS05605 RNA polymerase sigma factor FliA strong 51 95
o Dickeya dadantii 3937 DDA3937_RS13300 RNA polymerase sigma factor FliA strong 51 96
o Dickeya dianthicola 67-19 HGI48_RS13350 RNA polymerase sigma factor FliA cofit 51 96
o Dickeya dianthicola ME23 DZA65_RS13835 RNA polymerase sigma factor FliA strong 51 96
o Enterobacter asburiae PDN3 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family cofit 50 96
o Enterobacter sp. TBS_079 MPMX20_02847 RNA polymerase sigma factor FliA strong 50 96
o Rahnella sp. WP5 EX31_RS09450 RNA polymerase sigma factor FliA cofit 50 96
o Serratia liquefaciens MT49 IAI46_15785 RNA polymerase sigma factor FliA insig. 50 96
o Erwinia tracheiphila SCR3 LU632_RS13785 RNA polymerase sigma factor FliA insig. 49 96
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1690 RNA polymerase sigma factor for flagellar operon strong 50 96
o Escherichia coli ECOR27 NOLOHH_16400 fliA RNA polymerase sigma factor FliA cofit 49 96
o Escherichia coli ECOR38 HEPCGN_04135 fliA RNA polymerase sigma factor FliA cofit 49 96
o Escherichia coli ECRC101 OKFHMN_25780 fliA RNA polymerase sigma factor FliA insig. 49 96
o Escherichia coli ECRC101 MCAODC_19610 fliA RNA polymerase sigma factor FliA insig. 49 96
o Escherichia coli ECRC102 NIAGMN_02270 fliA RNA polymerase sigma factor FliA no data 49 96
o Escherichia coli ECRC62 BNILDI_15190 fliA RNA polymerase sigma factor FliA insig. 49 96
o Escherichia coli ECRC98 JDDGAC_00370 fliA RNA polymerase sigma factor FliA no data 49 96
o Escherichia coli ECRC99 KEDOAH_02310 fliA RNA polymerase sigma factor FliA no data 49 96
o Escherichia coli Nissle 1917 ECOLIN_RS10975 RNA polymerase sigma factor FliA insig. 49 96
o Escherichia coli BW25113 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) sig. 49 96
o Pantoea sp. MT58 IAI47_08160 RNA polymerase sigma factor FliA cofit 49 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01807 RNA polymerase sigma factor FliA insig. 49 96
o Pectobacterium carotovorum WPP14 HER17_RS08355 RNA polymerase sigma factor FliA cofit 51 96
o Escherichia fergusonii Becca EFB2_02023 RNA polymerase sigma factor FliA insig. 49 96
o Alteromonas macleodii MIT1002 MIT1002_01103 Sigma-F factor sig. 47 95
o Pseudomonas syringae pv. syringae B728a Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 49 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG cofit 49 97
o Pseudomonas sp. S08-1 OH686_02730 RNA polymerase sigma factor for flagellar operon cofit 49 97
o Pseudomonas putida KT2440 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons strong 49 97
o Marinobacter adhaerens HP15 HP15_2302 flagellar biosynthesis sigma factor FliA strong 48 96
o Pseudomonas sp. RS175 PFR28_00852 RNA polymerase sigma factor FliA strong 48 97
o Pseudomonas fluorescens FW300-N2C3 AO356_03730 flagellar biosynthesis sigma factor strong 48 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon strong 48 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon insig. 47 97
o Pseudomonas fluorescens FW300-N2E3 AO353_18785 flagellar biosynthesis sigma factor strong 47 97
o Pseudomonas stutzeri RCH2 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family strong 47 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon insig. 47 97
o Pseudomonas fluorescens SBW25 PFLU_RS21660 RNA polymerase sigma factor FliA cofit 46 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21660 RNA polymerase sigma factor FliA strong 46 97
o Pseudomonas simiae WCS417 PS417_19695 flagellar biosynthesis sigma factor strong 46 97
o Rhodanobacter sp. FW510-T8 OKGIIK_02830 fliA RNA polymerase sigma factor FliA insig. 47 97
o Rhodanobacter denitrificans MT42 LRK55_RS13320 RNA polymerase sigma factor FliA insig. 47 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13580 RNA polymerase sigma factor FliA strong 47 94
o Shewanella loihica PV-4 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) strong 44 96
o Shewanella amazonensis SB2B Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) strong 43 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_10335 RNA polymerase sigma factor FliA cofit 45 94
o Shewanella oneidensis MR-1 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) strong 45 95
o Lysobacter sp. OAE881 ABIE51_RS16865 RNA polymerase sigma factor FliA strong 46 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS20265 RNA polymerase sigma factor FliA insig. 45 96
o Shewanella sp. ANA-3 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) strong 45 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon cofit 46 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) strong 40 94
o Desulfovibrio vulgaris Miyazaki F DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) strong 39 93
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4065 RNA polymerase sigma factor for flagellar operon insig. 35 90
  Pseudomonas stutzeri RCH2 Psest_4160 RNA polymerase sigma factor, FliA/WhiG family insig. 37 93
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family cofit 31 94
  Erwinia tracheiphila SCR3 LU632_RS20475 FliA/WhiG family RNA polymerase sigma factor no data 32 91
o Mycobacterium tuberculosis H37Rv Rv3286c Alternative RNA polymerase sigma factor SigF insig. 28 93
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04885 RNA polymerase subunit sigma no data 29 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 25 93
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 27 93
  Phocaeicola dorei CL03T12C01 ABI39_RS13985 RNA polymerase sigma factor RpoD/SigA no data 30 79
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17770 RNA polymerase sigma factor RpoD/SigA no data 30 79
  Bacteroides ovatus ATCC 8483 BACOVA_00615 Sigma-70 region 2 no data 29 79
  Bacteroides stercoris CC31F HMPREF1181_RS10780 RNA polymerase sigma factor RpoD/SigA no data 29 79
  Bacteroides thetaiotaomicron VPI-5482 BT1311 RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) no data 29 79
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3437 RNA polymerase sigma factor, sigma-70 family no data 29 82
  Bifidobacterium breve UCC2003 BBR_RS16480 RNA polymerase sigma factor no data 29 96
  Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 25 93
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 25 93
  Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 26 93
  Marinobacter adhaerens HP15 HP15_315 RNA polymerase, sigma 70 subunit, RpoD no data 26 98
  Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 25 93
  Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 25 92
  Acinetobacter radioresistens SK82 MPMX26_00713 RNA polymerase sigma factor RpoD no data 25 93
  Castellaniella sp019104865 MT123 ABCV34_RS02695 RNA polymerase sigma factor RpoD no data 26 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04285 RNA polymerase sigma factor RpoD no data 28 79
  Dechlorosoma suillum PS Dsui_1209 RNA polymerase sigma factor, sigma-70 family no data 26 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_02745 RNA polymerase sigma factor RpoD no data 25 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16420 RNA polymerase sigma factor RpoD/SigA no data 29 81
  Cupriavidus basilensis FW507-4G11 RR42_RS14965 hypothetical protein strong 26 93
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3177 RNA polymerase sigma factor RpoD no data 26 93
  Pseudomonas putida KT2440 PP_0387 RNA polymerase, sigma 70 (sigma D) factor no data 26 96
  Dickeya dadantii 3937 DDA3937_RS02945 RNA polymerase sigma factor RpoD no data 25 93
  Erwinia tracheiphila SCR3 LU632_RS20725 rpoD RNA polymerase sigma factor RpoD no data 25 93