| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Variovorax sp. SCN45 | GFF7203 | | Two-component transcriptional response regulator, LuxR family | insig. | 100 | 100 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05900 | | HD-GYP domain | insig. | 49 | 99 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS07430 | | LuxR family transcriptional regulator | insig. | 52 | 100 |
| o | Paraburkholderia graminis OAS925 | ABIE53_002224 | | response regulator RpfG family c-di-GMP phosphodiesterase | insig. | 49 | 99 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS36695 | | HD domain-containing phosphohydrolase | insig. | 51 | 96 |
| o | Pseudomonas sp. RS175 | PFR28_02051 | | hypothetical protein | insig. | 45 | 99 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_391 | | hypothetical protein | insig. | 44 | 99 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_22490 | | phosphohydrolase | insig. | 44 | 99 |
| o | Pseudomonas sp. S08-1 | OH686_17905 | | Two-component transcriptional response regulator, LuxR family | insig. | 47 | 99 |
| o | Pseudomonas sp. DMC3 | GFF1164 | | 3'3'-cGAMP-specific phosphodiesterase 3 | cofit | 43 | 99 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS21845 | | transcription regulator protein | insig. | 45 | 99 |
| | Rhizobium sp. OAE497 | ABIE40_RS05520 | | HD-GYP domain-containing protein | insig. | 27 | 78 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_18790 | | metal-dependent phosphohydrolase | insig. | 24 | 79 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c16320 | | putative metal dependent phosphohydrolase | insig. | 24 | 83 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1148 | | metal dependent phosphohydrolase | insig. | 30 | 39 |
| | Klebsiella michiganensis M5al | BWI76_RS11355 | | phosphodiesterase | insig. | 27 | 37 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_17600 | | HDIG domain-containing protein | insig. | 27 | 35 |
| | Dechlorosoma suillum PS | Dsui_2250 | | putative domain HDIG-containing protein | no data | 31 | 33 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_19015 | | phosphodiesterase | insig. | 27 | 39 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS19560 | | HD-GYP domain-containing protein | insig. | 27 | 39 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS02865 | | response regulator | insig. | 29 | 35 |
| | Azospirillum sp. SherDot2 | MPMX19_05263 | | hypothetical protein | insig. | 27 | 36 |
| | Rahnella sp. WP5 | EX31_RS02155 | | HD domain-containing protein | insig. | 29 | 36 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2551 | | HD domain protein (TIGR) | insig. | 29 | 27 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_07645 | | Phosphohydrolase | insig. | 31 | 32 |
| | Shewanella sp. ANA-3 | Shewana3_3418 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 33 | 31 |
| | Azospirillum sp. SherDot2 | MPMX19_05513 | | 3'3'-cGAMP-specific phosphodiesterase 2 | insig. | 31 | 35 |
| | Dechlorosoma suillum PS | Dsui_0938 | | HD-GYP domain-containing protein | insig. | 30 | 38 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS18645 | | chemotaxis protein CheY | insig. | 28 | 44 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS11770 | | HD domain-containing protein | insig. | 30 | 31 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0129 | | sensory box/HDIG domain protein (TIGR) | insig. | 32 | 33 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1513 | | metal dependent phosphohydrolase (RefSeq) | insig. | 31 | 35 |
| | Dechlorosoma suillum PS | Dsui_3000 | | putative domain HDIG-containing protein | insig. | 28 | 36 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS21375 | | HD domain-containing protein | cofit | 27 | 47 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS17470 | | HD domain-containing phosphohydrolase | insig. | 29 | 35 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS17245 | | HD domain-containing protein | insig. | 29 | 35 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0995 | | metal dependent phosphohydrolase (RefSeq) | strong | 30 | 35 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16850 | | HD domain-containing phosphohydrolase | insig. | 29 | 36 |
| | Shewanella sp. ANA-3 | Shewana3_2820 | | metal dependent phosphohydrolase (RefSeq) | insig. | 26 | 39 |
| | Shewanella amazonensis SB2B | Sama_2951 | | response regulator receiver protein (RefSeq) | insig. | 29 | 33 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS01775 | | HD-GYP domain-containing protein | insig. | 27 | 34 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS21195 | | phosphohydrolase | insig. | 31 | 34 |
| | Dechlorosoma suillum PS | Dsui_0643 | | HD-GYP domain-containing protein | insig. | 28 | 30 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0972 | | HD domain protein (TIGR) | insig. | 28 | 29 |
| | Azospirillum sp. SherDot2 | MPMX19_00086 | | 3'3'-cGAMP-specific phosphodiesterase 2 | insig. | 31 | 37 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.460.1 | | HDIG domain protein | insig. | 31 | 32 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS23555 | | HD domain-containing protein | insig. | 29 | 35 |
| | Enterobacter sp. TBS_079 | MPMX20_02814 | | hypothetical protein | insig. | 28 | 32 |
| | Shewanella oneidensis MR-1 | SO3491 | | HDIG domain protein (NCBI ptt file) | insig. | 25 | 35 |
| | Dechlorosoma suillum PS | Dsui_1886 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 28 | 41 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4352 | | Response regulator | insig. | 31 | 31 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1460 | | putative PAS/PAC sensor protein (RefSeq) | cofit | 30 | 34 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08760 | | XRE family transcriptional regulator | no data | 44 | 13 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1338 | | metal dependent phosphohydrolase (RefSeq) | insig. | 30 | 29 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS06195 | | transcriptional regulator | insig. | 29 | 32 |
| | Shewanella sp. ANA-3 | Shewana3_3334 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 25 | 31 |
| | Shewanella oneidensis MR-1 | SO0860 | | response regulator (NCBI ptt file) | insig. | 30 | 31 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS23505 | | transcriptional regulator | strong | 27 | 38 |
| | Shewanella loihica PV-4 | Shew_3199 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 28 | 33 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09305 | | two-component system response regulator | insig. | 27 | 29 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS23735 | | phosphodiesterase | insig. | 26 | 30 |
| | Variovorax sp. SCN45 | GFF69 | | Two-component transcriptional response regulator, LuxR family | insig. | 42 | 16 |
| | Paraburkholderia graminis OAS925 | ABIE53_005345 | | two-component system nitrate/nitrite response regulator NarL | no data | 52 | 12 |
| | Rhodopseudomonas palustris CGA009 | TX73_000745 | | response regulator | insig. | 28 | 37 |
| | Shewanella oneidensis MR-1 | SO4711 | | HD domain protein (NCBI ptt file) | strong | 26 | 29 |
| | Azospirillum brasilense Sp245 | AZOBR_RS00185 | | transcriptional regulator | insig. | 30 | 36 |
| | Pseudomonas sp. S08-1 | OH686_07455 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 29 | 27 |
| | Shewanella sp. ANA-3 | Shewana3_0479 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 25 | 33 |
| | Ralstonia solanacearum GMI1000 | RS_RS21845 | | DNA-binding response regulator | insig. | 43 | 12 |
| | Bosea sp. OAE506 | ABIE41_RS11550 | | HD domain-containing phosphohydrolase | insig. | 32 | 34 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16755 | | HD-GYP domain-containing protein | insig. | 31 | 34 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS06150 | | HD-GYP domain-containing protein | cofit | 25 | 35 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06675 | | DNA-binding response regulator | insig. | 35 | 18 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2418 | | Response regulator | insig. | 29 | 31 |
| | Pseudomonas sp. S08-1 | OH686_14780 | | HD-GYP domain | insig. | 26 | 30 |
| | Shewanella sp. ANA-3 | Shewana3_4069 | | metal dependent phosphohydrolase (RefSeq) | strong | 26 | 29 |
| | Marinobacter adhaerens HP15 | HP15_4053 | | metal-dependent phosphohydrolase, HD subdomain protein | insig. | 25 | 30 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS11185 | | response regulator transcription factor | insig. | 39 | 16 |
| | Dechlorosoma suillum PS | Dsui_0757 | | HD-GYP domain-containing protein | insig. | 27 | 27 |
| | Pseudomonas sp. DMC3 | GFF1788 | | putative transcriptional regulatory protein NarL | no data | 49 | 12 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS04880 | | phosphodiesterase | insig. | 26 | 35 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04603 | | two component transcriptional regulator, LuxR family | insig. | 40 | 15 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08055 | | two-component system response regulator | cofit | 26 | 32 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS13405 | | phosphodiesterase | insig. | 25 | 30 |
| | Enterobacter sp. TBS_079 | MPMX20_00946 | | 3'3'-cGAMP-specific phosphodiesterase 1 | cofit | 24 | 36 |
| | Azospirillum brasilense Sp245 | AZOBR_RS23460 | | divalent ion tolerance protein CutA | insig. | 30 | 33 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS23980 | | response regulator transcription factor | insig. | 46 | 12 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS18195 | | XRE family transcriptional regulator | insig. | 39 | 15 |
| | Lysobacter sp. OAE881 | ABIE51_RS02650 | | response regulator transcription factor | insig. | 36 | 19 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS11195 | | phosphohydrolase | insig. | 31 | 30 |
| | Dechlorosoma suillum PS | Dsui_3001 | | putative domain HDIG-containing protein | insig. | 30 | 36 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02781 | | Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains | insig. | 28 | 32 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS06800 | | XRE family transcriptional regulator | insig. | 44 | 12 |
| | Rhizobium sp. OAE497 | ABIE40_RS28400 | | HD-GYP domain-containing protein | insig. | 27 | 30 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1815 | | transcriptional regulator, LuxR family (RefSeq) | insig. | 48 | 13 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09460 | | DNA-binding response regulator | cofit | 43 | 15 |
| | Lysobacter sp. OAE881 | ABIE51_RS11560 | | two-component system response regulator | strong | 31 | 34 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS16770 | | DNA-binding response regulator | insig. | 33 | 18 |
| | Ralstonia solanacearum UW163 | UW163_RS18125 | | DNA-binding response regulator | insig. | 33 | 18 |
| | Pseudomonas sp. SVBP6 | COO64_RS23495 | | response regulator transcription factor | insig. | 54 | 12 |
| | Paraburkholderia graminis OAS925 | ABIE53_001627 | | DNA-binding NarL/FixJ family response regulator | insig. | 44 | 12 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS09200 | | two-component system response regulator | cofit | 28 | 29 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1819 | | transcriptional regulator, LuxR family (RefSeq) | insig. | 27 | 42 |
| | Shewanella sp. ANA-3 | Shewana3_1079 | | metal dependent phosphohydrolase (RefSeq) | insig. | 24 | 34 |
| | Shewanella amazonensis SB2B | Sama_0136 | | putative metal dependent phosphohydrolase (RefSeq) | cofit | 23 | 29 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS17390 | | two-component system response regulator | insig. | 27 | 32 |
| | Shewanella amazonensis SB2B | Sama_3111 | | response regulator receiver protein (RefSeq) | insig. | 25 | 33 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS11045 | | response regulator transcription factor | insig. | 43 | 18 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS11045 | | response regulator transcription factor | insig. | 43 | 18 |
| | Variovorax sp. SCN45 | GFF3032 | | Two-component transcriptional response regulator, LuxR family | insig. | 35 | 15 |
| | Dechlorosoma suillum PS | Dsui_1228 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | insig. | 27 | 27 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS20960 | | two-component system response regulator | cofit | 24 | 29 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_895 | | HDIG domain protein | insig. | 28 | 30 |
| | Pantoea sp. MT58 | IAI47_01225 | | HD-GYP domain-containing protein | insig. | 26 | 30 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS34710 | | chemotaxis protein CheY | insig. | 25 | 32 |
| | Pseudomonas simiae WCS417 | PS417_15875 | | LuxR family transcriptional regulator | insig. | 51 | 11 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4489 | | Nitrate/nitrite response regulator protein | no data | 46 | 13 |
| | Variovorax sp. SCN45 | GFF1180 | | hypothetical protein | insig. | 41 | 12 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06050 | | DNA-binding response regulator | cofit | 41 | 16 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS14075 | | HD-GYP domain-containing protein | insig. | 30 | 33 |
| | Marinobacter adhaerens HP15 | HP15_3664 | | response regulator receiver modulated metal dependent phosphohydrolase | cofit | 26 | 33 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0335 | | Bacterial regulatory proteins, luxR family | insig. | 46 | 14 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS10420 | | LuxR C-terminal-related transcriptional regulator | insig. | 44 | 12 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS08030 | | DNA-binding response regulator | insig. | 44 | 14 |
| | Ralstonia solanacearum UW163 | UW163_RS05600 | | DNA-binding response regulator | insig. | 44 | 14 |
| | Variovorax sp. OAS795 | ABID97_RS19165 | | response regulator transcription factor | no data | 42 | 14 |
| | Dechlorosoma suillum PS | Dsui_1863 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | insig. | 32 | 33 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2545 | | metal dependent phosphohydrolase (RefSeq) | insig. | 30 | 31 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2900.1 | | response regulator | strong | 29 | 34 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS04735 | | phosphodiesterase | insig. | 23 | 39 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15965 | | response regulator transcription factor | insig. | 42 | 13 |
| | Azospirillum sp. SherDot2 | MPMX19_05749 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 30 | 33 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3123 | | HD domain protein (TIGR) | insig. | 29 | 36 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20710 | | HD-GYP domain-containing protein | cofit | 26 | 30 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_29680 | | cyclic di-GMP phosphodiesterase | insig. | 30 | 35 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5823 | | Nitrate/nitrite response regulator protein | no data | 46 | 11 |
| | Variovorax sp. SCN45 | GFF1411 | | Two-component transcriptional response regulator, LuxR family | insig. | 44 | 14 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2933 | | response regulator/sensory box/HDIG domain protein (TIGR) | strong | 28 | 34 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09310 | | two-component system response regulator | insig. | 23 | 29 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS18280 | | response regulator transcription factor | no data | 52 | 12 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS59515 | | response regulator transcription factor | insig. | 51 | 12 |
| | Enterobacter sp. TBS_079 | MPMX20_04404 | | Putative HTH-type transcriptional regulator YhjB | insig. | 44 | 12 |
| | Azospirillum sp. SherDot2 | MPMX19_02416 | | 3'3'-cGAMP-specific phosphodiesterase 2 | insig. | 29 | 32 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS28015 | | cyclic di-GMP phosphodiesterase | insig. | 29 | 27 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS19965 | | phosphodiesterase | insig. | 25 | 30 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS47620 | | cyclic di-GMP phosphodiesterase | insig. | 29 | 27 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11645 | | DNA-binding response regulator | no data | 52 | 12 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS03740 | | response regulator transcription factor | insig. | 40 | 17 |
| | Methylophilus sp. DMC18 | GFF606 | | Nitrate/nitrite response regulator protein NarL | insig. | 43 | 11 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08855 | | response regulator transcription factor | strong | 38 | 15 |
| | Pseudomonas sp. RS175 | PFR28_02249 | | hypothetical protein | insig. | 34 | 17 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3602 | | Response regulator | insig. | 31 | 28 |
| | Azospirillum sp. SherDot2 | MPMX19_01247 | | Transcriptional regulatory protein DegU | insig. | 30 | 18 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4231.1 | | two-component system regulatory protein | insig. | 50 | 12 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2797.1 | | DNA-binding response regulator, LuxR family | no data | 49 | 12 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS13200 | | transcriptional regulator | insig. | 44 | 13 |
| | Mycobacterium tuberculosis H37Rv | Rv0844c | | Possible nitrate/nitrite response transcriptional regulatory protein NarL | insig. | 43 | 17 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS04395 | | LuxR C-terminal-related transcriptional regulator | insig. | 38 | 14 |
| | Ralstonia solanacearum GMI1000 | RS_RS05940 | | DNA-binding response regulator | sig. | 36 | 19 |
| | Pseudomonas sp. BP01 | JOY50_RS08485 | | LuxR C-terminal-related transcriptional regulator | insig. | 33 | 17 |
| | Shewanella oneidensis MR-1 | SO4003 | | response regulator (NCBI ptt file) | insig. | 26 | 33 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS00885 | | chemotaxis protein CheY | insig. | 26 | 32 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS26120 | | HD domain-containing protein | insig. | 25 | 44 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS26120 | | HD domain-containing protein | insig. | 25 | 44 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3168 | | Response regulator | insig. | 23 | 40 |
| | Caulobacter crescentus NA1000 | CCNA_01134 | | LuxR-family transcriptional regulator | insig. | 46 | 12 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01134 | | LuxR-family transcriptional regulator | cofit | 46 | 12 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS20525 | | LuxR family transcriptional regulator | cofit | 37 | 19 |
| | Ralstonia solanacearum GMI1000 | RS_RS15885 | | DNA-binding response regulator | insig. | 35 | 22 |
| | Azospirillum sp. SherDot2 | MPMX19_03200 | | Transcriptional regulatory protein LiaR | insig. | 33 | 17 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_21160 | | cyclic di-GMP phosphodiesterase | insig. | 28 | 27 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2878 | | Two-component response regulator | insig. | 42 | 13 |
| | Lysobacter sp. OAE881 | ABIE51_RS10320 | | response regulator transcription factor | insig. | 41 | 12 |
| | Azospirillum sp. SherDot2 | MPMX19_01793 | | Transcriptional regulatory protein DegU | insig. | 36 | 15 |
| | Azospirillum brasilense Sp245 | AZOBR_RS08035 | | regulator | insig. | 34 | 18 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS00610 | | HD-GYP domain-containing protein | insig. | 29 | 30 |
| | Azospirillum brasilense Sp245 | AZOBR_RS26775 | | hisitidine kinase | sig. | 27 | 26 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS12565 | | HD domain-containing protein | insig. | 25 | 32 |
| | Pseudomonas sp. S08-1 | OH686_23605 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 22 | 33 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08905 | | XRE family transcriptional regulator | insig. | 42 | 12 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS18250 | | DNA-binding response regulator | cofit | 36 | 19 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2030 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 35 | 22 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS10755 | | response regulator transcription factor | sig. | 36 | 19 |
| | Azospirillum sp. SherDot2 | MPMX19_06045 | | putative cyclic di-GMP phosphodiesterase | insig. | 26 | 31 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1181 | | response regulator (TIGR) | cofit | 25 | 32 |
| | Variovorax sp. SCN45 | GFF638 | | Two-component transcriptional response regulator, LuxR family | insig. | 46 | 11 |
| | Lysobacter sp. OAE881 | ABIE51_RS10325 | | response regulator transcription factor | insig. | 45 | 13 |
| | Methylophilus sp. DMC18 | GFF423 | | hypothetical protein | insig. | 43 | 12 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1127.1 | | transcriptional regulator | insig. | 32 | 29 |
| | Pseudomonas segetis P6 | ACVTMO_RS10595 | | HD-GYP domain-containing protein | insig. | 27 | 30 |
| | Shewanella loihica PV-4 | Shew_2713 | | metal dependent phosphohydrolase (RefSeq) | insig. | 26 | 33 |
| | Dechlorosoma suillum PS | Dsui_1836 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 26 | 33 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02894 | | HTH-type transcriptional regulator MalT | cofit | 40 | 18 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_13920 | | helix-turn-helix transcriptional regulator | insig. | 37 | 14 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05625 | | two-component system response regulator | insig. | 27 | 33 |
| | Pseudomonas simiae WCS417 | PS417_13950 | | LuxR family transcriptional regulator | insig. | 49 | 10 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16425 | | response regulator transcription factor | insig. | 42 | 15 |
| | Pseudomonas stutzeri RCH2 | Psest_0662 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 40 | 13 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS09670 | | cyclic di-GMP phosphodiesterase | sig. | 29 | 35 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS52375 | | cyclic di-GMP phosphodiesterase | insig. | 29 | 35 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS12300 | | HD-GYP domain-containing protein | insig. | 27 | 30 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF75 | | Transcription regulator like protein EpsA | no data | 37 | 14 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS15120 | | DNA-binding response regulator | insig. | 35 | 19 |
| | Ralstonia solanacearum UW163 | UW163_RS12590 | | DNA-binding response regulator | insig. | 35 | 19 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2310 | | Pole remodelling regulatory diguanylate cyclase | insig. | 25 | 29 |
| | Alteromonas macleodii MIT1002 | MIT1002_04107 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 24 | 32 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_01935 | | DNA-binding response regulator | sig. | 29 | 22 |
| | Agrobacterium fabrum C58 | Atu2291 | | hypothetical protein | insig. | 27 | 30 |
| | Azospirillum sp. SherDot2 | MPMX19_01880 | | hypothetical protein | insig. | 27 | 28 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2270 | | Pole remodelling regulatory diguanylate cyclase | insig. | 26 | 27 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_780 | | HDIG domain protein | insig. | 26 | 30 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05255 | | DNA-binding response regulator | insig. | 34 | 15 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS05930 | | response regulator transcription factor | insig. | 44 | 12 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_06630 | | DNA-binding response regulator | no data | 44 | 12 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS46845 | | response regulator transcription factor | insig. | 44 | 12 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03017 | | transcriptional regulator, LuxR family | cofit | 40 | 16 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS00085 | | response regulator transcription factor | insig. | 38 | 16 |
| | Azospirillum brasilense Sp245 | AZOBR_RS10280 | | transcriptional regulator | insig. | 35 | 13 |
| | Azospirillum sp. SherDot2 | MPMX19_01611 | | Transcriptional regulatory protein DegU | no data | 33 | 15 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_28160 | | hypothetical protein | insig. | 40 | 11 |
| | Alteromonas macleodii MIT1002 | MIT1002_03332 | | CsgBAC operon transcriptional regulatory protein | strong | 34 | 16 |
| | Methylophilus sp. DMC18 | GFF1539 | | Cyclic di-GMP phosphodiesterase | cofit | 27 | 30 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12065 | | hypothetical protein | insig. | 44 | 12 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c19640 | | transcriptional regulator, containing response regulator domain | insig. | 42 | 15 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1296 | | DNA-binding response regulator, LuxR family | strong | 38 | 18 |
| | Variovorax sp. SCN45 | GFF6693 | | Two-component transcriptional response regulator, LuxR family | insig. | 33 | 15 |
| | Dechlorosoma suillum PS | Dsui_2782 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | no data | 29 | 29 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_3074 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | cofit | 26 | 49 |
| | Pseudomonas orientalis W4I3 | QF045_RS25685 | | LuxR C-terminal-related transcriptional regulator | cofit | 43 | 15 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS30310 | | LuxR C-terminal-related transcriptional regulator | insig. | 35 | 15 |
| | Variovorax sp. SCN45 | GFF3038 | | hypothetical protein | insig. | 34 | 18 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS04990 | | HD-GYP domain-containing protein | insig. | 28 | 30 |
| | Ralstonia solanacearum UW163 | UW163_RS08635 | | HD-GYP domain-containing protein | insig. | 28 | 30 |
| | Pseudomonas sp. S08-1 | OH686_00410 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 25 | 34 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04986 | | Cyclic di-GMP phosphodiesterase | cofit | 23 | 38 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3644 | | Pole remodelling regulatory diguanylate cyclase | insig. | 23 | 27 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS14665 | | helix-turn-helix transcriptional regulator | insig. | 47 | 12 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14665 | | helix-turn-helix transcriptional regulator | strong | 47 | 12 |
| | Pseudomonas sp. BP01 | JOY50_RS29135 | | LuxR C-terminal-related transcriptional regulator | insig. | 47 | 11 |
| | Pseudomonas stutzeri RCH2 | Psest_3491 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | no data | 46 | 11 |
| | Klebsiella michiganensis M5al | BWI76_RS14165 | | trans-acting regulatory protein of aco operon | insig. | 41 | 11 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05306 | | two component transcriptional regulator, LuxR family | insig. | 39 | 12 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS07810 | | response regulator transcription factor | insig. | 39 | 12 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23725 | | LuxR family transcriptional regulator | insig. | 38 | 18 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3272 | | DNA-binding response regulator, LuxR family | insig. | 38 | 19 |
| | Dechlorosoma suillum PS | Dsui_1862 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 37 | 15 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2277 | | DNA-binding response regulator, LuxR family | insig. | 37 | 17 |
| | Azospirillum sp. SherDot2 | MPMX19_04073 | | hypothetical protein | insig. | 31 | 31 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS32080 | | response regulator transcription factor | insig. | 35 | 20 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS06830 | | DNA-binding response regulator | insig. | 42 | 13 |