Homologs of GFF399 from Variovorax sp. SCN45

3'-to-5' exoribonuclease RNase R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

Top 100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Variovorax sp. SCN45	GFF399		3'-to-5' exoribonuclease RNase R	cofit	100	100
o	Variovorax sp. OAS795	ABID97_RS17200		ribonuclease R	strong	96	98
o	Acidovorax sp. GW101-3H11	Ac3H11_412		3'-to-5' exoribonuclease RNase R	strong	81	98
o	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF4921		3'-to-5' exoribonuclease RNase R	cofit	79	92
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_00712		RNAse R	strong	66	87
o	Paraburkholderia graminis OAS925	ABIE53_001940		ribonuclease R	strong	61	97
	Burkholderia phytofirmans PsJN	BPHYT_RS08455		ribonuclease R	sig.	65	87
	Cupriavidus basilensis FW507-4G11	RR42_RS13065		ribonuclease R	strong	60	92
o	Paraburkholderia sabiae LMG 24235	QEN71_RS22925		ribonuclease R	strong	62	92
o	Ralstonia solanacearum GMI1000	RS_RS06155		ribonuclease R	strong	63	90
o	Ralstonia solanacearum PSI07	RPSI07_RS18030		ribonuclease R	strong	62	91
o	Ralstonia solanacearum IBSBF1503	RALBFv3_RS15345		ribonuclease R	strong	63	87
o	Ralstonia solanacearum UW163	UW163_RS12810		ribonuclease R	insig.	63	87
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS10985		ribonuclease R	sig.	63	89
o	Herbaspirillum seropedicae SmR1	HSERO_RS09290		ribonuclease R	strong	62	87
o	Castellaniella sp019104865 MT123	ABCV34_RS06625		ribonuclease R	cofit	56	88
	Methylophilus sp. DMC18	GFF635		Ribonuclease R	insig.	48	99
	Dechlorosoma suillum PS	Dsui_3128		ribonuclease R	cofit	52	90
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_3607		3'-to-5' exoribonuclease RNase R	strong	49	92
o	Pseudomonas putida KT2440	PP_4880		exoribonuclease R	strong	47	97
o	Pseudomonas fluorescens FW300-N2C3	AO356_08610		exoribonuclease R	strong	49	92
o	Pseudomonas sp. BP01	JOY50_RS17320	rnr	ribonuclease R	insig.	49	87
o	Pseudomonas simiae WCS417	PS417_02555		exoribonuclease R	strong	49	91
o	Pseudomonas orientalis W4I3	QF045_RS05605		ribonuclease R	strong	50	90
o	Pseudomonas lactucae CFBP13502	GEMAOFIL_00747		Ribonuclease R	cofit	48	92
o	Pseudomonas fluorescens SBW25	PFLU_RS02625		ribonuclease R	cofit	50	87
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS02625		ribonuclease R	strong	50	87
	Pseudomonas sp. SVBP6	COO64_RS17955	rnr	ribonuclease R	insig.	49	87
o	Pseudomonas sp. RS175	PFR28_05130		Ribonuclease R	strong	48	92
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_1403		3'-to-5' exoribonuclease RNase R	strong	47	92
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_144		3'-to-5' exoribonuclease RNase R	strong	48	92
o	Pseudomonas syringae pv. syringae B728a	Psyr_0579		RNAse R	strong	46	97
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_0579		RNAse R	strong	46	97
o	Pseudomonas fluorescens FW300-N2E3	AO353_13200		exoribonuclease R	strong	48	92
o	Pseudomonas sp. DMC3	GFF3229		Ribonuclease R	sig.	50	87
	Pseudomonas aeruginosa MRSN321	DY961_RS10465	rnr;go_function=RNA	ribonuclease R	strong	49	87
	Pseudomonas aeruginosa PUPa3	DQ20_RS51590	rnr;go_function=RNA	ribonuclease R	strong	48	94
o	Shewanella sp. ANA-3	Shewana3_0697		RNAse R (RefSeq)	strong	45	99
	Pseudomonas aeruginosa PA14	IKLFDK_28865		ribonuclease R	strong	48	94
o	Kangiella aquimarina DSM 16071	B158DRAFT_1989		ribonuclease R	cofit	46	91
	Pseudomonas sp. S08-1	OH686_15910		ribonuclease R	cofit	49	87
o	Pseudomonas segetis P6	ACVTMO_RS20555	rnr	ribonuclease R	strong	46	93
o	Shewanella oneidensis MR-1	SO3935	vacB	ribonuclease R (NCBI ptt file)	strong	47	89
o	Shewanella loihica PV-4	Shew_3289		ribonuclease R (RefSeq)	strong	44	99
o	Marinobacter adhaerens HP15	HP15_622		exoribonuclease R	strong	47	87
	Pseudomonas stutzeri RCH2	Psest_0691		ribonuclease R	strong	48	88
o	Shewanella amazonensis SB2B	Sama_3067		exoribonuclease II (RefSeq)	strong	47	90
o	Alteromonas macleodii MIT1002	MIT1002_03606		Ribonuclease R	cofit	44	94
o	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS11220		ribonuclease R	cofit	43	96
	Escherichia coli ECRC101	MCAODC_02735	rnr	ribonuclease R	sig.	45	87
	Escherichia coli ECRC102	NIAGMN_10070	rnr	ribonuclease R	cofit	45	87
	Escherichia coli ECRC98	JDDGAC_15860	rnr	ribonuclease R	cofit	45	87
	Escherichia coli ECRC99	KEDOAH_15935	rnr	ribonuclease R	no data	45	87
	Escherichia coli BL21	ECD_04046		exoribonuclease R, RNase R	insig.	45	87
	Escherichia coli BW25113	b4179	vacB	putative enzyme (VIMSS)	strong	45	87
	Rhodanobacter denitrificans MT42	LRK55_RS00235		ribonuclease R	strong	47	87
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS00495		ribonuclease R	strong	47	87
	Escherichia coli ECRC100	OKFHMN_12220	rnr	ribonuclease R	cofit	45	87
	Escherichia fergusonii Becca	EFB2_04356		Ribonuclease R	insig.	45	87
	Escherichia coli ECOR27	NOLOHH_04485	rnr	ribonuclease R	insig.	45	87
	Escherichia coli ECRC62	BNILDI_07005	rnr	ribonuclease R	cofit	45	87
	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_03863		Ribonuclease R	cofit	45	87
	Rhodanobacter sp. FW510-T8	OKGIIK_06755	rnr	ribonuclease R	strong	48	87
	Rhodanobacter sp000427505 FW510-R12	LRK53_RS09655		ribonuclease R	cofit	47	87
	Escherichia coli ECOR38	HEPCGN_10450	rnr	ribonuclease R	cofit	45	87
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS08270		ribonuclease R	strong	47	88
	Escherichia coli Nissle 1917	ECOLIN_RS24265		ribonuclease R	sig.	45	87
o	Pantoea sp. MT58	IAI47_02625		ribonuclease R	sig.	42	96
o	Vibrio cholerae E7946 ATCC 55056	CSW01_13155		ribonuclease R	cofit	44	94
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF832		'3'-to-5' exoribonuclease RNase R' transl_table=11	strong	45	87
	Erwinia tracheiphila HP pepo 2.2	IJEDHG_13230	rnr	ribonuclease R	strong	43	97
	Erwinia tracheiphila SCR3	LU632_RS21750	rnr	ribonuclease R	strong	43	97
o	Rahnella sp. WP5	EX31_RS08785		ribonuclease R	insig.	44	93
	Klebsiella pneumoniae MKP103	KDGMDA_11075		ribonuclease R	cofit	42	96
	Klebsiella pneumoniae MRSN742743	KFA93_RS21025	rnr;go_function=RNA	ribonuclease R	strong	42	96
o	Klebsiella michiganensis M5al	BWI76_RS02575		exoribonuclease R	sig.	42	97
	Enterobacter sp. TBS_079	MPMX20_00460		Ribonuclease R	sig.	44	87
o	Erwinia amylovora T8	OLJFJH_02470		ribonuclease R	strong	43	97
	Enterobacter asburiae PDN3	EX28DRAFT_3376		ribonuclease R	strong	42	95
	Serratia liquefaciens MT49	IAI46_01660		ribonuclease R	strong	42	95
	Pectobacterium carotovorum WPP14	HER17_RS03835		ribonuclease R	cofit	45	87
o	Dickeya dianthicola ME23	DZA65_RS18405		ribonuclease R	insig.	43	94
o	Dickeya dianthicola 67-19	HGI48_RS17315		ribonuclease R	cofit	43	97
o	Acinetobacter radioresistens SK82	MPMX26_02684		Ribonuclease R	cofit	43	97
o	Dickeya dadantii 3937	DDA3937_RS17260		ribonuclease R	sig.	43	95
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.3370.1		3'-to-5' exoribonuclease RNase R	strong	44	87
	Lysobacter sp. OAE881	ABIE51_RS07475		ribonuclease R	cofit	44	87
	Acinetobacter baumannii LAC-4	RR41_RS02345		ribonuclease R	strong	43	87
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS10530		ribonuclease R	strong	32	87
	Desulfovibrio vulgaris Hildenborough JW710	DVU2467	rnr	ribonuclease R (TIGR)	insig.	35	90
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS04270		ribonuclease R	strong	32	87
	Xanthobacter sp. DMC5	GFF1081		Ribonuclease R	insig.	36	80
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_0669		ribonuclease R	no data	32	89
	Desulfovibrio vulgaris Miyazaki F	DvMF_0925		ribonuclease R (RefSeq)	sig.	36	89
	Azospirillum brasilense Sp245	AZOBR_RS16165		ribonuclease R	insig.	36	81
	Magnetospirillum magneticum AMB-1	AMB_RS04465		ribonuclease R	cofit	35	86
	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS08325		ribonuclease R	cofit	36	83
	Phaeobacter inhibens DSM 17395	PGA1_c36430		putative ribonuclease R	strong	36	80
	Rhodospirillum rubrum S1H	Rru_A3203		ribonuclease R (NCBI)	cofit	35	89
	Phocaeicola dorei CL03T12C01	ABI39_RS06100		ribonuclease R	sig.	31	87