| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Sphingobium sp. HT1-2 | GFF3845 | | Two-component transcriptional response regulator, LuxR family | cofit | 100 | 100 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_02275 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 49 | 97 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2422 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 48 | 97 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_07535 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 47 | 99 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS04165 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 44 | 95 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_02581 | | Sigma-54 interaction domain protein | insig. | 44 | 97 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_14055 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 46 | 97 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS01145 | | sigma-54-dependent Fis family transcriptional regulator | strong | 45 | 97 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS16590 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 44 | 97 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT0856 | | two-component system response regulator (NCBI ptt file) | sig. | 43 | 97 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS12140 | | sigma-54 dependent transcriptional regulator | insig. | 43 | 97 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS16190 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 43 | 97 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS13070 | | sigma-54 dependent transcriptional regulator | cofit | 44 | 94 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS03345 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 42 | 97 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02393 | | Sigma-54 interaction domain protein | insig. | 41 | 97 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT0690 | | two-component system response regulator (NCBI ptt file) | insig. | 41 | 97 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS17680 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 41 | 97 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04200 | | Sigma-54 interaction domain protein | insig. | 40 | 96 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS08600 | | sigma-54 dependent transcriptional regulator | insig. | 41 | 97 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS03545 | | sigma-54-dependent Fis family transcriptional regulator | strong | 42 | 97 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1469 | | two-component system response regulator (NCBI ptt file) | sig. | 41 | 96 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS17605 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 42 | 97 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS05570 | | sigma-54 dependent transcriptional regulator | insig. | 42 | 97 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS04010 | | sigma-54 dependent transcriptional regulator | insig. | 43 | 97 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS11840 | | sigma-54 dependent transcriptional regulator | insig. | 43 | 99 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12105 | | sigma-54 dependent transcriptional regulator | insig. | 43 | 99 |
| o | Pseudomonas orientalis W4I3 | QF045_RS21480 | | sigma-54 dependent transcriptional regulator | insig. | 41 | 96 |
| o | Rahnella sp. WP5 | EX31_RS02520 | | sigma-54-dependent Fis family transcriptional regulator | strong | 40 | 96 |
| o | Dickeya dadantii 3937 | DDA3937_RS20820 | | two-component system response regulator VfmH | strong | 38 | 97 |
| o | Dickeya dianthicola 67-19 | HGI48_RS00425 | | two-component system response regulator VfmH | cofit | 37 | 97 |
| o | Dickeya dianthicola ME23 | DZA65_RS00425 | | sigma-54-dependent Fis family transcriptional regulator | cofit | 37 | 97 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS11790 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 36 | 97 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS15800 | | sigma-54-dependent Fis family transcriptional regulator | strong | 35 | 97 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1529 | | two-component system response regulator (NCBI ptt file) | strong | 36 | 97 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04264 | | Sigma-54 interaction domain protein | insig. | 36 | 97 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS04840 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 35 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_04512 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 39 | 97 |
| | Xanthobacter sp. DMC5 | GFF2901 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 39 | 97 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3220 | atoC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | no data | 38 | 97 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS14460 | | sigma-54 dependent transcriptional regulator | insig. | 36 | 97 |
| | Pseudomonas sp. BP01 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | insig. | 41 | 84 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS10015 | | sigma-54 dependent transcriptional regulator | sig. | 41 | 85 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21130 | | Fis family transcriptional regulator | insig. | 37 | 100 |
| | Shewanella loihica PV-4 | Shew_1442 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | strong | 40 | 84 |
| | Rhizobium sp. OAE497 | ABIE40_RS26335 | | sigma-54 dependent transcriptional regulator | strong | 36 | 97 |
| | Pseudomonas putida KT2440 | PP_1066 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 40 | 84 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0700 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | insig. | 38 | 97 |
| | Pseudomonas sp. S08-1 | OH686_13325 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | cofit | 38 | 97 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2200 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | no data | 37 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18205 | | Fis family transcriptional regulator | insig. | 41 | 84 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03980 | | Fis family transcriptional regulator | strong | 37 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 38 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | insig. | 40 | 84 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1419 | atoC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | sig. | 38 | 97 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 39 | 84 |
| | Pseudomonas sp. DMC3 | GFF5115 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 40 | 84 |
| | Pseudomonas sp. RS175 | PFR28_03376 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | sig. | 40 | 84 |
| | Klebsiella michiganensis M5al | BWI76_RS01605 | | transcriptional regulatory protein ZraR | insig. | 41 | 84 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 40 | 84 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 40 | 84 |
| | Escherichia coli ECRC62 | BNILDI_06055 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4188 | | Response regulator of zinc sigma-54-dependent two-component system | insig. | 38 | 96 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30385 | | Fis family transcriptional regulator | insig. | 37 | 97 |
| | Dechlorosoma suillum PS | Dsui_3486 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 37 | 99 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_776 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 40 | 84 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16265 | | Fis family transcriptional regulator | strong | 40 | 84 |
| | Pseudomonas protegens RBAN4 | FABNJH_24655 | | Sigma-54 dependent DNA-binding response regulator | insig. | 39 | 84 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS02725 | | sigma-54 dependent transcriptional regulator | insig. | 40 | 81 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4775 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | strong | 40 | 84 |
| | Methylophilus sp. DMC18 | GFF1426 | | Transcriptional regulatory protein ZraR | insig. | 43 | 83 |
| | Escherichia coli BL21 | ECD_03881 | | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein | insig. | 40 | 84 |
| | Escherichia coli ECOR38 | HEPCGN_11960 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Shewanella sp. ANA-3 | Shewana3_1412 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | cofit | 40 | 84 |
| | Escherichia fergusonii Becca | EFB2_04606 | | Transcriptional regulatory protein ZraR | insig. | 40 | 84 |
| | Escherichia coli BW25113 | b4004 | zraR | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) | insig. | 40 | 84 |
| | Shewanella amazonensis SB2B | Sama_2213 | | response regulator receiver protein (RefSeq) | strong | 38 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 37 | 97 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_16520 | | DNA-binding response regulator | insig. | 36 | 97 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS02520 | | Fis family transcriptional regulator | strong | 40 | 85 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS23090 | | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2149 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 38 | 97 |
| | Sinorhizobium meliloti 1021 | SM_b20613 | | C4-dicarboxylate transport transcriptional regulator | strong | 37 | 97 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0215 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 44 | 69 |
| | Escherichia coli ECOR27 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 39 | 84 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04045 | | Transcriptional regulatory protein ZraR | insig. | 39 | 84 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16305 | | sigma-54 dependent transcriptional regulator | insig. | 38 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS00595 | | sigma-54 dependent transcriptional regulator | insig. | 41 | 84 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | strong | 41 | 84 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | strong | 41 | 84 |
| | Escherichia coli ECRC100 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | cofit | 40 | 84 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | cofit | 39 | 85 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS05020 | | sigma-54 dependent transcriptional regulator | strong | 38 | 97 |
| | Paraburkholderia graminis OAS925 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | insig. | 40 | 85 |
| | Escherichia coli ECRC101 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Escherichia coli ECRC102 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Escherichia coli ECRC99 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | no data | 40 | 84 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | cofit | 38 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_03597 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 41 | 84 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_401 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 40 | 84 |
| | Pseudomonas simiae WCS417 | PS417_01305 | | Fis family transcriptional regulator | sig. | 40 | 84 |
| | Pseudomonas simiae WCS417 | PS417_05535 | | Fis family transcriptional regulator | strong | 39 | 84 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04800 | | sigma-54 dependent transcriptional regulator | strong | 38 | 97 |
| | Shewanella oneidensis MR-1 | SO3138 | dctD | C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) | insig. | 39 | 84 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS19025 | | sigma-54 dependent transcriptional regulator | strong | 39 | 84 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_06350 | | Fis family transcriptional regulator | strong | 39 | 84 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS53150 | | sigma-54 dependent transcriptional regulator | strong | 39 | 84 |
| | Pseudomonas protegens RBAN4 | FABNJH_24715 | | Sigma-54-dependent Fis family transcriptional regulator | insig. | 39 | 84 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS09195 | | Fis family transcriptional regulator | strong | 38 | 85 |
| | Rhodospirillum rubrum S1H | Rru_A1435 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | strong | 38 | 97 |
| | Escherichia coli BL21 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | insig. | 35 | 97 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01490 | | Regulatory protein AtoC | insig. | 35 | 97 |
| | Escherichia coli BW25113 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | insig. | 35 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_4267 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 41 | 84 |
| | Shewanella amazonensis SB2B | Sama_1549 | | response regulator receiver protein (RefSeq) | insig. | 39 | 91 |
| | Variovorax sp. SCN45 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 38 | 86 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01294 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 39 | 84 |
| | Paraburkholderia graminis OAS925 | ABIE53_001852 | | two-component system C4-dicarboxylate transport response regulator DctD | strong | 38 | 84 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00486 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | cofit | 40 | 84 |
| | Pseudomonas putida KT2440 | PP_0263 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 40 | 84 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 39 | 84 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | strong | 39 | 84 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_11860 | | Fis family transcriptional regulator | strong | 40 | 84 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS09115 | | sigma-54 dependent transcriptional regulator | insig. | 38 | 84 |
| | Escherichia fergusonii Becca | EFB2_01635 | | Regulatory protein AtoC | insig. | 35 | 97 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | no data | 35 | 97 |
| | Escherichia coli ECOR38 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | insig. | 35 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_10065 | | Fis family transcriptional regulator | strong | 41 | 84 |
| | Pseudomonas orientalis W4I3 | QF045_RS04425 | | sigma-54 dependent transcriptional regulator | cofit | 40 | 84 |
| | Escherichia coli ECRC98 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 39 | 84 |
| | Agrobacterium fabrum C58 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | strong | 37 | 84 |
| | Pseudomonas orientalis W4I3 | QF045_RS08460 | | sigma-54 dependent transcriptional regulator | cofit | 39 | 84 |
| | Variovorax sp. OAS795 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | insig. | 36 | 97 |
| | Pseudomonas sp. DMC3 | GFF4159 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 40 | 84 |
| | Caulobacter crescentus NA1000 | CCNA_03424 | | AAA-family response regulator tacA | strong | 37 | 89 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03424 | | AAA-family response regulator tacA | cofit | 37 | 89 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | sig. | 39 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_05978 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 39 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37765 | | sigma-54 dependent transcriptional regulator | insig. | 38 | 84 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01730 | atoC | sigma-54-dependent Fis family transcriptional regulator | cofit | 37 | 97 |
| | Shewanella oneidensis MR-1 | SO3689 | | sigma-54 dependent nitrogen response regulator (NCBI ptt file) | sig. | 36 | 97 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_10090 | | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Methylophilus sp. DMC18 | GFF1277 | | Regulatory protein AtoC | insig. | 38 | 88 |
| | Shewanella loihica PV-4 | Shew_3682 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | strong | 38 | 84 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS06635 | | sigma-54 dependent transcriptional regulator | strong | 39 | 87 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS04990 | | sigma-54 dependent transcriptional regulator | cofit | 37 | 97 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_03805 | | C4-dicarboxylate ABC transporter | strong | 37 | 97 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_07640 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 36 | 96 |
| | Shewanella sp. ANA-3 | Shewana3_3257 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | insig. | 36 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_0705 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 39 | 97 |
| | Pseudomonas simiae WCS417 | PS417_05525 | | Fis family transcriptional regulator | strong | 38 | 84 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4938 | | Helix-turn-helix, Fis-type | sig. | 40 | 84 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4938 | | Helix-turn-helix, Fis-type | insig. | 40 | 84 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS24385 | zraR;go_function=sequence-specific | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 84 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | strong | 38 | 84 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | strong | 38 | 84 |
| | Shewanella amazonensis SB2B | Sama_0125 | | response regulator receiver protein (RefSeq) | strong | 38 | 84 |
| | Azospirillum sp. SherDot2 | MPMX19_03494 | | Regulatory protein AtoC | insig. | 37 | 97 |
| | Pseudomonas segetis P6 | ACVTMO_RS01485 | algB | sigma-54-dependent response regulator transcription factor AlgB | insig. | 36 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 41 | 81 |
| | Pseudomonas sp. BP01 | JOY50_RS26420 | | sigma-54 dependent transcriptional regulator | insig. | 40 | 84 |
| | Shewanella sp. ANA-3 | Shewana3_4076 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | cofit | 38 | 84 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS01705 | | Fis family transcriptional regulator | insig. | 39 | 90 |
| | Shewanella loihica PV-4 | Shew_0726 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | insig. | 35 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS07975 | | sigma-54 dependent transcriptional regulator | insig. | 42 | 83 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01292 | | Regulatory protein AtoC | cofit | 38 | 84 |
| | Pseudomonas sp. RS175 | PFR28_04889 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 40 | 84 |
| | Pseudomonas simiae WCS417 | PS417_22645 | | C4-dicarboxylate ABC transporter | sig. | 37 | 97 |
| | Ralstonia solanacearum GMI1000 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 41 | 81 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0823 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | insig. | 39 | 84 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_04380 | | response regulator | strong | 43 | 67 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 41 | 81 |
| | Ralstonia solanacearum UW163 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 41 | 81 |
| | Pseudomonas protegens RBAN4 | FABNJH_24290 | dctD | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 37 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS24815 | | sigma-54 dependent transcriptional regulator | insig. | 37 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3883 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 40 | 84 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1666 | | C4-dicarboxylate transport transcriptional regulatory protein | sig. | 39 | 84 |
| | Pseudomonas stutzeri RCH2 | Psest_4132 | | alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) | strong | 36 | 97 |
| | Shewanella oneidensis MR-1 | SO4718 | | sigma-54 dependent response regulator (NCBI ptt file) | sig. | 38 | 84 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS19085 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 37 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 37 | 97 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0539 | | sigma-54 dependent DNA-binding response regulator (TIGR) | sig. | 39 | 84 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_15905 | | transcriptional regulator | insig. | 38 | 97 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16225 | | Fis family transcriptional regulator | insig. | 36 | 90 |
| | Escherichia fergusonii Becca | EFB2_04538 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 35 | 97 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS23460 | | sigma-54 dependent transcriptional regulator | cofit | 35 | 97 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS24280 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 36 | 97 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS24280 | | sigma-54-dependent Fis family transcriptional regulator | strong | 36 | 97 |
| | Xanthobacter sp. DMC5 | GFF3675 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 35 | 98 |
| | Dechlorosoma suillum PS | Dsui_3286 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 41 | 84 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1353.1 | | Type IV fimbriae expression regulatory protein PilR | sig. | 39 | 85 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS11070 | | sigma-54 dependent transcriptional regulator | cofit | 36 | 97 |
| | Pseudomonas protegens RBAN4 | FABNJH_01565 | dctD | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 39 | 84 |
| | Pseudomonas orientalis W4I3 | QF045_RS08450 | | sigma-54 dependent transcriptional regulator | insig. | 38 | 84 |
| | Methylophilus sp. DMC18 | GFF2815 | | Regulatory protein AtoC | insig. | 38 | 81 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3381 | ntrC | transcriptional regulatory protein zraR (TIGR) | strong | 39 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_27655 | | two-component system response regulator DctD | strong | 36 | 99 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS50420 | dctD;inference=COORDINATES | two-component system response regulator DctD | strong | 36 | 99 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04682 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | cofit | 36 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5122 | | Type IV fimbriae expression regulatory protein PilR | insig. | 39 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS18445 | | chemotaxis protein CheY | insig. | 38 | 84 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS23225 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 38 | 97 |
| | Ralstonia solanacearum UW163 | UW163_RS16475 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 38 | 97 |
| | Shewanella loihica PV-4 | Shew_2341 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | insig. | 37 | 87 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_17800 | | C4-dicarboxylate ABC transporter | strong | 36 | 97 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4656 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 34 | 84 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS11680 | dctD;inference=COORDINATES | two-component system response regulator DctD | strong | 36 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_10980 | | chemotaxis protein CheY | insig. | 36 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_02733 | | Regulatory protein LuxO | insig. | 39 | 83 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2109 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 37 | 91 |
| | Pseudomonas sp. RS175 | PFR28_03462 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 36 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01779 | | DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains | insig. | 42 | 80 |
| | Pseudomonas sp. RS175 | PFR28_04634 | | Alginate biosynthesis transcriptional regulatory protein AlgB | strong | 35 | 97 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS23170 | | ATPase AAA | insig. | 41 | 82 |
| | Pseudomonas sp. RS175 | PFR28_03751 | | Regulatory protein AtoC | insig. | 37 | 97 |
| | Pseudomonas sp. S08-1 | OH686_12145 | | Alginate biosynthesis two-component system response regulator AlgB | cofit | 37 | 97 |
| | Dechlorosoma suillum PS | Dsui_2360 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 37 | 97 |
| | Pseudomonas putida KT2440 | PP_3419 | | Sigma-54 dependent transcriptional regulator/response regulator | sig. | 36 | 97 |
| | Pseudomonas segetis P6 | ACVTMO_RS21725 | | sigma-54-dependent transcriptional regulator | sig. | 39 | 82 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0118 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | insig. | 39 | 84 |
| | Marinobacter adhaerens HP15 | HP15_523 | | two component, sigma54 specific, transcriptional regulator, Fis family | strong | 36 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5487 | | Nitrogen regulation protein NR(I) | strong | 36 | 97 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS23710 | pilR;inference=COORDINATES | two-component system response regulator PilR | strong | 38 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_685 | | Nitrogen regulation protein NR(I) | no data | 36 | 97 |
| | Pseudomonas putida KT2440 | PP_1401 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 35 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS02525 | algB | sigma-54-dependent response regulator transcription factor AlgB | insig. | 35 | 97 |
| | Shewanella amazonensis SB2B | Sama_2861 | | response regulator receiver protein (RefSeq) | insig. | 35 | 99 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0196 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 38 | 82 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2934 | ntrX | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | no data | 37 | 94 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS17060 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 97 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS04160 | | sigma-54-dependent Fis family transcriptional regulator | sig. | 33 | 97 |
| | Pseudomonas sp. DMC3 | GFF4000 | | Regulatory protein AtoC | cofit | 37 | 98 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25715 | algB;inference=COORDINATES | sigma-54-dependent response regulator transcription factor AlgB | cofit | 35 | 97 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS58145 | algB;inference=COORDINATES | sigma-54-dependent response regulator transcription factor AlgB | sig. | 35 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_00790 | | two-component response regulator PilR | strong | 38 | 97 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS56175 | pilR;inference=COORDINATES | two-component system response regulator PilR | strong | 38 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_11415 | | chemotaxis protein CheY | strong | 35 | 97 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0521 | | PEP-CTERM-box response regulator transcription factor | strong | 33 | 99 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_26000 | | sigma-54-dependent response regulator transcription factor AlgB | strong | 35 | 97 |
| | Pseudomonas protegens RBAN4 | FABNJH_00475 | algB | sigma-54-dependent response regulator transcription factor AlgB | insig. | 35 | 97 |
| | Escherichia fergusonii Becca | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | strong | 36 | 97 |
| | Marinobacter adhaerens HP15 | HP15_725 | | two component, sigma54 specific, transcriptional regulator, Fis family | strong | 35 | 97 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25855 | | sigma-54 dependent transcriptional regulator | strong | 39 | 84 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS58285 | | sigma-54 dependent transcriptional regulator | strong | 39 | 84 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS00045 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 38 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14005 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 38 | 84 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_584 | | alginate biosynthesis transcriptional regulatory protein AlgB | sig. | 36 | 97 |
| | Marinobacter adhaerens HP15 | HP15_328 | | two component, sigma54 specific, transcriptional regulator, Fis family | strong | 35 | 97 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS01375 | | sigma-54 dependent transcriptional regulator | strong | 37 | 85 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1806 | | Nitrogen regulation protein NR(I) | strong | 36 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4152 | | alginate biosynthesis transcriptional regulatory protein AlgB | strong | 35 | 97 |