Homologs of GFF320 from Variovorax sp. SCN45

RNA polymerase ECF-type sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF320 RNA polymerase ECF-type sigma factor insig. 100 100
o Variovorax sp. OAS795 ABID97_RS16825 sigma-70 family RNA polymerase sigma factor insig. 90 97
o Burkholderia phytofirmans PsJN BPHYT_RS25560 RNA polymerase sigma factor insig. 64 96
  Acidovorax sp. GW101-3H11 Ac3H11_1827 RNA polymerase sigma-70 factor, ECF subfamily insig. 64 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 64 88
o Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 66 89
  Burkholderia phytofirmans PsJN BPHYT_RS25505 RNA polymerase sigma factor insig. 63 88
o Pseudomonas putida KT2440 PP_0994 putative RNA polymerase sigma factor insig. 63 87
o Dechlorosoma suillum PS Dsui_0155 RNA polymerase sigma factor, sigma-70 family strong 61 88
o Pseudomonas stutzeri RCH2 Psest_0114 RNA polymerase sigma factor, sigma-70 family insig. 59 88
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01786 RNA polymerase sigma-70 factor, ECF subfamily insig. 54 94
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01090 sigma-70 family RNA polymerase sigma factor insig. 51 90
o Caulobacter crescentus NA1000 CCNA_03362 ECF-family RNA polymerase sigma factor strong 49 89
o Caulobacter crescentus NA1000 Δfur CCNA_03362 ECF-family RNA polymerase sigma factor cofit 49 89
o Bosea sp. OAE506 ABIE41_RS02435 sigma-70 family RNA polymerase sigma factor insig. 47 91
o Xanthobacter sp. DMC5 GFF1206 ECF RNA polymerase sigma factor SigF insig. 48 87
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3636 RNA polymerase sigma factor, sigma-70 family insig. 47 90
o Agrobacterium fabrum C58 Atu2268 ECF family sigma factor insig. 49 85
o Sphingobium sp. HT1-2 GFF5259 hypothetical protein insig. 49 71
o Sinorhizobium meliloti 1021 SM_b20531 RNA polymerase sigma factor insig. 39 88
o Azospirillum sp. SherDot2 MPMX19_04570 ECF RNA polymerase sigma factor SigF insig. 40 84
o Rhizobium sp. OAE497 ABIE40_RS01010 sigma-70 family RNA polymerase sigma factor insig. 41 83
  Xanthobacter sp. DMC5 GFF2972 ECF RNA polymerase sigma factor SigF no data 39 89
o Erwinia amylovora T8 OLJFJH_08545 RNA polymerase subunit sigma-70 insig. 37 84
o Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 39 82
  Rhodanobacter sp. FW510-T8 OKGIIK_03490 hypothetical protein insig. 38 82
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS13745 sigma-70 family RNA polymerase sigma factor insig. 36 82
o Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 40 84
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS13930 RNA polymerase sigma factor insig. 38 82
  Rhizobium sp. OAE497 ABIE40_RS19610 sigma-70 family RNA polymerase sigma factor insig. 36 81
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09080 sigma-70 family RNA polymerase sigma factor cofit 39 82
  Rhodanobacter denitrificans MT42 LRK55_RS14380 sigma-70 family RNA polymerase sigma factor insig. 35 82
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS14665 sigma-70 family RNA polymerase sigma factor insig. 35 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 32 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 33 81
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 32 76
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 31 80
o Bacteroides thetaiotaomicron VPI-5482 BT3269 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 82
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS10060 sigma-70 family RNA polymerase sigma factor insig. 35 61
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 33 76
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0443 RNA polymerase sigma factor, sigma-70 family insig. 31 79
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 25 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 79
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 28 90
  Rhodanobacter denitrificans MT42 LRK55_RS09165 RNA polymerase sigma factor insig. 33 61
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09505 RNA polymerase sigma factor insig. 33 61
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 31 89
  Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 31 80
  Alteromonas macleodii MIT1002 MIT1002_03202 Sigma-K factor insig. 28 85
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 32 76
  Rhodanobacter sp. FW510-T8 OKGIIK_14520 rpoE RNA polymerase sigma factor insig. 33 61
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 30 77
  Marinobacter adhaerens HP15 HP15_3899 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 30 83
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 26 71
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 24 80
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 31 63
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 26 80
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0726 RNA polymerase sigma factor, sigma-70 family insig. 28 80
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 32 82
  Phocaeicola dorei CL03T12C01 ABI39_RS03560 RNA polymerase sigma factor insig. 26 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 25 80
  Bacteroides ovatus ATCC 8483 BACOVA_00883 RNA polymerase sigma-70 factor insig. 25 82
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 32 69
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 31 82
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 26 89
  Cellulophaga baltica 18 M666_RS10480 RNA polymerase sigma factor sig. 25 69
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 29 78
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 24 82
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 23 96
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0766 RNA polymerase sigma factor, sigma-70 family insig. 33 66
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 29 79
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 29 79
  Acidovorax sp. GW101-3H11 Ac3H11_1599 RNA polymerase sigma factor insig. 26 89
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 24 87
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 32 63
  Bacteroides thetaiotaomicron VPI-5482 BT2184 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 27 66
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 28 68
  Bacteroides stercoris CC31F HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor insig. 30 66
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 27 91
  Bacteroides thetaiotaomicron VPI-5482 BT1817 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 24 85
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 31 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 31 85
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 27 78
  Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 27 90
  Rhodanobacter sp. FW510-T8 OKGIIK_12575 rpoE RNA polymerase subunit sigma-24 insig. 25 74
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 25 89
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 25 77
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 32 80
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 30 83
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 30 83
  Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 30 83
  Kangiella aquimarina DSM 16071 B158DRAFT_1843 RNA polymerase sigma factor, sigma-70 family insig. 28 89
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 27 89
  Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 33 65
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 29 61
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 25 86
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 24 80
  Fusobacterium nucleatum SB010 HUW76_07635 RNA polymerase sigma factor no data 21 65
  Magnetospirillum magneticum AMB-1 AMB_RS09285 RNA polymerase sigma factor no data 34 66
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 29 78