Homologs of GFF224 from Variovorax sp. SCN45

Bacterial ribosome SSU maturation protein RimP
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF224 Bacterial ribosome SSU maturation protein RimP no data 100 100
o Variovorax sp. OAS795 ABID97_RS16495 ribosome maturation factor RimP no data 92 100
o Acidovorax sp. GW101-3H11 Ac3H11_2869 FIG000325: clustered with transcription termination protein NusA no data 77 88
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4341 FIG000325: clustered with transcription termination protein NusA strong 66 92
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 41 92
o Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 40 92
o Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 40 92
o Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 37 93
o Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 40 92
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 38 93
o Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 38 93
o Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 38 93
o Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 39 93
o Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 38 93
o Herbaspirillum seropedicae SmR1 HSERO_RS18005 ribosome maturation protein RimP no data 36 92
  Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 34 89
  Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 40 59
  Methylophilus sp. DMC18 GFF2850 Ribosome maturation factor RimP no data 41 60
  Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 33 62
  Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 34 60
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 34 58
  Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 34 60
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09130 ribosome maturation factor RimP strong 34 60
  Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 38 51
  Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 34 60
  Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 34 60
  Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 35 59
  Desulfovibrio vulgaris Miyazaki F DvMF_2516 protein of unknown function DUF150 (RefSeq) sig. 30 79
  Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 37 60
  Pseudomonas sp. DMC3 GFF4986 Ribosome maturation factor RimP no data 36 59
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04947 Ribosome maturation factor RimP no data 36 59
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 36 59
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 36 59
  Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 36 59
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 35 57
  Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 36 59
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 36 59
  Pseudomonas orientalis W4I3 QF045_RS26235 ribosome maturation factor RimP no data 36 59
  Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 36 59
  Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 34 60
  Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 33 60
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 37 58
  Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 37 59
  Xanthobacter sp. DMC5 GFF2298 Ribosome maturation factor RimP no data 32 64
  Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 36 59
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 36 59
  Erwinia amylovora T8 OLJFJH_07230 ribosome maturation factor RimP no data 31 60
  Pseudomonas segetis P6 ACVTMO_RS05945 rimP ribosome maturation factor RimP no data 38 59
  Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 36 59
  Sphingobium sp. HT1-2 GFF2359 Bacterial ribosome SSU maturation protein RimP no data 34 65
  Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 32 60
  Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 32 60
  Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECRC100 OKFHMN_18100 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 32 60
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 32 60
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 32 60
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 32 60
  Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 32 60
  Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 32 60
  Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 34 60
  Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 35 59
  Pseudomonas sp. BP01 JOY50_RS26825 rimP ribosome maturation factor RimP no data 35 59
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 34 56
  Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 32 60
  Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 32 60
  Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 30 60
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13925 rimP ribosome maturation factor RimP no data 32 59
  Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 29 60
  Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 34 59
  Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 32 59
  Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 30 60
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 37 46
  Klebsiella pneumoniae MRSN742743 KFA93_RS13165 rimP;go_process=ribosomal ribosome maturation factor RimP no data 30 60
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 33 56
  Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 32 52
  Klebsiella pneumoniae MKP103 KDGMDA_05910 ribosome maturation factor RimP no data 31 56
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09060 ribosome maturation factor RimP no data 33 54
  Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 31 71
  Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 32 59
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 32 59
  Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 33 55
  Rhizobium sp. OAE497 ABIE40_RS00320 ribosome maturation factor RimP no data 32 64
  Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 40 36
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 40 36
  Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 34 48
  Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 34 48
  Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP insig. 34 54
  Pseudomonas aeruginosa MRSN321 DY961_RS09475 rimP;go_process=ribosomal ribosome maturation factor RimP no data 32 59
  Pseudomonas aeruginosa PA14 IKLFDK_29870 ribosome maturation factor RimP no data 32 59
  Pseudomonas aeruginosa PUPa3 DQ20_RS52560 rimP;go_process=ribosomal ribosome maturation factor RimP no data 32 59
  Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 33 51
  Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 31 63
  Agrobacterium fabrum C58 Atu0090 hypothetical protein no data 29 59
  Sinorhizobium meliloti 1021 SMc02911 hypothetical protein no data 32 65