Homologs of GFF2047 from Sphingobium sp. HT1-2

Putative pre-16S rRNA nuclease YqgF
SEED: Putative Holliday junction resolvase YqgF
KEGG: putative holliday junction resolvase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF2047 Putative pre-16S rRNA nuclease YqgF no data 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0078 RNAse H-fold protein YqgF no data 71 97
o Bosea sp. OAE506 ABIE41_RS17195 Holliday junction resolvase RuvX no data 58 91
o Dinoroseobacter shibae DFL-12 Dshi_1064 Holliday junction resolvase YqgF (RefSeq) no data 53 96
o Magnetospirillum magneticum AMB-1 AMB_RS08015 Holliday junction resolvase RuvX no data 54 90
o Rhizobium sp. OAE497 ABIE40_RS07415 Holliday junction resolvase RuvX no data 51 92
o Rhodospirillum rubrum S1H Rru_A3178 Holliday junction resolvase YqgF (NCBI) no data 51 90
  Azospirillum brasilense Sp245 AZOBR_RS20625 Holliday junction resolvase insig. 49 91
o Phaeobacter inhibens DSM 17395 PGA1_c19190 RNAse H-fold protein YqgF no data 46 94
o Xanthobacter sp. DMC5 GFF926 Putative pre-16S rRNA nuclease no data 53 87
o Azospirillum sp. SherDot2 MPMX19_01571 Putative pre-16S rRNA nuclease no data 48 92
o Agrobacterium fabrum C58 Atu1316 hypothetical protein no data 50 84
o Caulobacter crescentus NA1000 CCNA_02521 endonuclease involved in recombination no data 48 93
o Caulobacter crescentus NA1000 Δfur CCNA_02521 endonuclease involved in recombination cofit 48 93
o Sinorhizobium meliloti 1021 SMc01355 Holliday junction resolvase-like protein no data 43 98
o Rhodopseudomonas palustris CGA009 TX73_016100 Holliday junction resolvase RuvX no data 48 89
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04270 Holliday junction resolvase RuvX no data 45 92
  Klebsiella pneumoniae MKP103 KDGMDA_04600 YqgE/AlgH family protein no data 32 84
  Klebsiella pneumoniae MRSN742743 KFA93_RS12145 ruvX;go_process=rRNA Holliday junction resolvase RuvX no data 32 84
  Methylophilus sp. DMC18 GFF870 Putative pre-16S rRNA nuclease no data 31 87
  Enterobacter asburiae PDN3 EX28DRAFT_2987 RNAse H-fold protein YqgF no data 33 84
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3051 Putative Holliday junction resolvase YggF no data 33 84
  Klebsiella michiganensis M5al BWI76_RS24085 Holliday junction resolvase RuvX no data 32 84
  Escherichia coli BL21 ECD_02779 putative Holliday junction resolvase no data 33 84
  Escherichia fergusonii Becca EFB2_00953 Putative pre-16S rRNA nuclease no data 33 84
  Escherichia coli ECOR27 NOLOHH_11135 ruvX Holliday junction resolvase RuvX no data 33 84
  Escherichia coli ECOR38 HEPCGN_18570 ruvX Holliday junction resolvase RuvX no data 33 84
  Escherichia coli ECRC62 BNILDI_09715 ruvX Holliday junction resolvase RuvX no data 33 84
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00769 Putative pre-16S rRNA nuclease no data 33 84
  Escherichia coli Nissle 1917 ECOLIN_RS16405 Holliday junction resolvase RuvX no data 33 84
  Escherichia coli BW25113 b2949 yqgF Holliday junction resolvase-like protein (NCBI) no data 33 84
  Escherichia coli ECRC100 OKFHMN_19265 ruvX Holliday junction resolvase RuvX no data 32 84
  Escherichia coli ECRC101 MCAODC_09785 ruvX Holliday junction resolvase RuvX no data 32 84
  Escherichia coli ECRC102 NIAGMN_17030 ruvX Holliday junction resolvase RuvX no data 32 84
  Escherichia coli ECRC98 JDDGAC_22895 ruvX Holliday junction resolvase RuvX no data 32 84
  Escherichia coli ECRC99 KEDOAH_08875 ruvX Holliday junction resolvase RuvX no data 32 84
  Enterobacter sp. TBS_079 MPMX20_03807 Putative pre-16S rRNA nuclease no data 32 84
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16090 Holliday junction resolvase RuvX no data 35 80
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22055 Holliday junction resolvase RuvX no data 30 82
  Pantoea sp. MT58 IAI47_03605 Holliday junction resolvase RuvX no data 35 80
  Fusobacterium nucleatum SB010 HUW76_04355 Holliday junction resolvase RuvX no data 34 83
  Bifidobacterium breve UCC2003 BBR_RS15065 Holliday junction resolvase RuvX no data 30 82
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18175 Holliday junction resolvase RuvX no data 32 83
  Synechococcus elongatus PCC 7942 Synpcc7942_2398 Holliday junction resolvase-like protein strong 32 82
  Erwinia amylovora T8 OLJFJH_08560 Holliday junction resolvase RuvX no data 35 80
  Synechocystis sp000284455 PCC 6803 SGL_RS17860 Holliday junction resolvase RuvX strong 31 82
  Pseudomonas fluorescens FW300-N2C3 AO356_13460 Holliday junction resolvase no data 33 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4608 Putative Holliday junction resolvase YggF no data 33 87
  Kangiella aquimarina DSM 16071 B158DRAFT_0192 RNAse H-fold protein YqgF no data 31 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1885 RNAse H-fold protein YqgF no data 27 85
  Pseudomonas syringae pv. syringae B728a Psyr_0484 Conserved hypothetical protein 250 no data 33 83
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0484 Conserved hypothetical protein 250 no data 33 83
  Pseudomonas putida KT2440 PP_4996 Putative Holliday junction resolvase no data 33 83
  Dickeya dianthicola 67-19 HGI48_RS18505 Holliday junction resolvase RuvX no data 33 80
  Pseudomonas sp. RS175 PFR28_04235 Putative pre-16S rRNA nuclease no data 33 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2349 Putative Holliday junction resolvase YggF no data 32 87
  Shewanella loihica PV-4 Shew_1143 Holliday junction resolvase-like protein (RefSeq) no data 29 84
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1018 Putative Holliday junction resolvase YggF no data 32 87
  Pseudomonas sp. SVBP6 COO64_RS13585 ruvX Holliday junction resolvase RuvX no data 31 83
  Pseudomonas sp. DMC3 GFF202 Putative pre-16S rRNA nuclease no data 32 83
  Pseudomonas sp. BP01 JOY50_RS09710 ruvX Holliday junction resolvase RuvX no data 33 83
  Rhodanobacter denitrificans MT42 LRK55_RS03985 Holliday junction resolvase RuvX no data 37 61
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS04215 Holliday junction resolvase RuvX no data 37 61
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1721.1 Putative Holliday junction resolvase YggF no data 33 84
  Serratia liquefaciens MT49 IAI46_21400 Holliday junction resolvase RuvX no data 32 80
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_03440 ruvX Holliday junction resolvase RuvX no data 33 80
  Erwinia tracheiphila SCR3 LU632_RS05470 ruvX Holliday junction resolvase RuvX no data 33 80
  Dickeya dadantii 3937 DDA3937_RS18570 Holliday junction resolvase RuvX no data 32 80
  Pseudomonas segetis P6 ACVTMO_RS03075 ruvX Holliday junction resolvase RuvX no data 33 86
  Pseudomonas fluorescens FW300-N2E3 AO353_08125 Holliday junction resolvase no data 32 87
  Castellaniella sp019104865 MT123 ABCV34_RS10725 Holliday junction resolvase RuvX no data 37 65
  Rahnella sp. WP5 EX31_RS02675 Holliday junction resolvase RuvX no data 32 80
  Shewanella oneidensis MR-1 SO3347 conserved hypothetical protein TIGR00250 (NCBI ptt file) no data 27 83
  Pseudomonas orientalis W4I3 QF045_RS01090 Holliday junction resolvase RuvX no data 32 87
  Dickeya dianthicola ME23 DZA65_RS19640 Holliday junction resolvase RuvX no data 32 80
  Paraburkholderia graminis OAS925 ABIE53_001129 putative Holliday junction resolvase no data 33 89
  Pseudomonas simiae WCS417 PS417_26690 Holliday junction resolvase no data 32 87
  Pectobacterium carotovorum WPP14 HER17_RS02625 Holliday junction resolvase RuvX no data 31 80
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00200 Holliday junction resolvase RuvX no data 27 85
  Pseudomonas fluorescens SBW25 PFLU_RS28335 Holliday junction resolvase RuvX no data 31 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28335 Holliday junction resolvase RuvX no data 31 87
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05475 Putative pre-16S rRNA nuclease no data 31 87
  Pseudomonas sp. S08-1 OH686_10930 Putative pre-16S rRNA nuclease YqgF no data 34 83
  Shewanella sp. ANA-3 Shewana3_1199 Holliday junction resolvase-like protein (RefSeq) no data 27 83
  Bacteroides ovatus ATCC 8483 BACOVA_01773 Holliday junction resolvase-like protein no data 28 85
  Pseudomonas aeruginosa PUPa3 DQ20_RS37300 ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES Holliday junction resolvase RuvX no data 34 81
  Mycobacterium tuberculosis H37Rv Rv2554c Conserved protein no data 32 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04815 putative holliday junction resolvase no data 30 89
  Bacteroides thetaiotaomicron VPI-5482 BT0419 putative endonuclease (NCBI ptt file) no data 28 85
  Pseudomonas aeruginosa MRSN321 DY961_RS22000 ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES Holliday junction resolvase RuvX no data 34 81
  Pseudomonas aeruginosa PA14 IKLFDK_23400 Holliday junction resolvase RuvX no data 34 81
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20370 Holliday junction resolvase RuvX no data 31 82
  Pseudomonas stutzeri RCH2 Psest_0293 RNAse H-fold protein YqgF no data 35 81
  Paraburkholderia sabiae LMG 24235 QEN71_RS25790 Holliday junction resolvase RuvX no data 30 84
  Bacteroides stercoris CC31F HMPREF1181_RS04285 Holliday junction resolvase RuvX no data 29 85
  Alteromonas macleodii MIT1002 MIT1002_03057 Putative Holliday junction resolvase no data 29 83
  Burkholderia phytofirmans PsJN BPHYT_RS04225 Holliday junction resolvase no data 31 89
  Ralstonia sp. UNC404CL21Col ABZR87_RS08615 Holliday junction resolvase RuvX no data 30 88
  Dechlorosoma suillum PS Dsui_0594 RNAse H-fold protein YqgF no data 29 84
  Shewanella amazonensis SB2B Sama_2473 Holliday junction resolvase-like protein (RefSeq) no data 28 80