Homologs of Dsui_1127 from Dechlorosoma suillum PS

site-specific recombinase XerD
SEED: Shufflon-specific DNA recombinase

220 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dechlorosoma suillum PS Dsui_1127 site-specific recombinase XerD cofit 100 100
o Burkholderia phytofirmans PsJN BPHYT_RS35970 DNA recombinase insig. 52 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01966 Site-specific recombinase XerD insig. 39 72
  Ralstonia solanacearum GMI1000 RS_RS07820 site-specific integrase insig. 38 70
  Ralstonia solanacearum UW163 UW163_RS11435 site-specific integrase insig. 40 71
  Cupriavidus basilensis FW507-4G11 RR42_RS19640 hypothetical protein insig. 38 71
  Castellaniella sp019104865 MT123 ABCV34_RS02095 site-specific integrase insig. 38 70
  Magnetospirillum magneticum AMB-1 AMB_RS18470 site-specific integrase insig. 37 71
  Pseudomonas sp. SVBP6 COO64_RS20275 site-specific integrase insig. 39 72
  Magnetospirillum magneticum AMB-1 AMB_RS04635 site-specific integrase cofit 37 70
  Azospirillum sp. SherDot2 MPMX19_01320 Tyrosine recombinase XerC insig. 38 71
  Ralstonia solanacearum PSI07 RPSI07_RS15520 site-specific integrase insig. 33 71
  Lysobacter sp. OAE881 ABIE51_RS07380 site-specific integrase strong 34 71
  Cupriavidus basilensis FW507-4G11 RR42_RS08460 integrase insig. 33 71
  Ralstonia solanacearum GMI1000 RS_RS08345 site-specific integrase insig. 31 71
  Cupriavidus basilensis FW507-4G11 RR42_RS07990 integrase insig. 31 68
  Dechlorosoma suillum PS Dsui_0138 site-specific recombinase XerD cofit 32 71
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS12115 integrase insig. 38 48
  Ralstonia solanacearum UW163 UW163_RS01495 integrase insig. 38 48
  Acinetobacter radioresistens SK82 MPMX26_01376 hypothetical protein no data 32 61
  Ralstonia sp. UNC404CL21Col ABZR87_RS13170 site-specific integrase insig. 29 71
  Phaeobacter inhibens DSM 17395 PGA1_c19240 putative phage integrase protein insig. 30 69
  Rhodanobacter denitrificans MT42 LRK55_RS00045 site-specific integrase insig. 33 59
  Pseudomonas protegens RBAN4 FABNJH_10345 Tyr recombinase domain-containing protein insig. 33 60
  Escherichia coli ECRC100 OKFHMN_12950 integrase cofit 29 70
  Escherichia coli ECRC101 MCAODC_03460 integrase insig. 29 70
  Escherichia coli ECRC98 JDDGAC_16585 integrase insig. 29 70
  Escherichia coli ECRC99 KEDOAH_15200 integrase no data 29 70
  Pseudomonas sp. RS175 PFR28_01144 hypothetical protein sig. 33 60
  Pseudomonas fluorescens FW300-N2C3 AO356_02165 integrase insig. 33 60
  Desulfovibrio vulgaris Hildenborough JW710 DVU1757 site-specific recombinase, phage integrase family (TIGR) insig. 30 70
  Alteromonas macleodii MIT1002 MIT1002_03388 integrase insig. 26 64
  Pseudomonas orientalis W4I3 QF045_RS10385 site-specific integrase cofit 32 61
  Pseudomonas sp. BP01 JOY50_RS25210 site-specific integrase insig. 32 60
  Escherichia coli ECRC100 OKFHMN_09660 xerD integrase insig. 26 72
  Escherichia coli ECRC98 JDDGAC_13285 xerD integrase insig. 26 72
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01680 hypothetical protein cofit 32 60
  Pseudomonas fluorescens SBW25 PFLU_RS07815 site-specific integrase insig. 29 69
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07815 site-specific integrase insig. 29 69
  Variovorax sp. OAS795 ABID97_RS13910 tyrosine-type recombinase/integrase cofit 29 69
  Klebsiella pneumoniae MKP103 KDGMDA_15045 integrase insig. 30 55
  Escherichia coli ECRC101 MCAODC_00180 xerD Site-specific recombinase XerD insig. 28 56
  Escherichia coli ECRC102 NIAGMN_07520 xerD integrase insig. 28 56
  Agrobacterium fabrum C58 Atu1194 phage-related integrase insig. 31 65
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_26430 fimB Integrase/recombinase includes phage integrase insig. 27 71
  Erwinia tracheiphila SCR3 LU632_RS16620 site-specific integrase insig. 31 56
  Pseudomonas fluorescens FW300-N2E3 AO353_00290 integrase insig. 30 54
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0378 Site-specific recombinase XerD insig. 30 52
  Sphingobium sp. HT1-2 GFF3220 Phage (Mu-like) virion morphogenesis protein cofit 27 71
  Escherichia coli ECOR27 NOLOHH_00750 intD Prophage integrase IntD insig. 28 54
  Escherichia coli BW25113 b0537 intD DLP12 prophage; predicted integrase (NCBI) sig. 28 54
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03395 Tyrosine recombinase XerC insig. 28 57
  Escherichia coli BL21 ECD_00486 DLP12 prophage; putative phage integrase insig. 28 52
  Pseudomonas simiae WCS417 PS417_07745 hypothetical protein insig. 32 42
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS14430 integrase cofit 27 62
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS13965 site-specific integrase insig. 29 52
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_08430 Integrase insig. 26 62
  Lysobacter sp. OAE881 ABIE51_RS12320 site-specific integrase insig. 27 61
  Azospirillum brasilense Sp245 AZOBR_RS24420 integrase insig. 24 69
  Pseudomonas sp. S08-1 OH686_07985 Phage integrase cofit 28 58
  Pseudomonas putida KT2440 PP_2297 putative integrative genetic element Ppu40, integrase insig. 27 64
  Burkholderia phytofirmans PsJN BPHYT_RS05665 integrase insig. 30 42
  Phaeobacter inhibens DSM 17395 PGA1_c00260 putative phage integrase, catalytic core insig. 28 64
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23985 hypothetical protein insig. 44 21
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2968.1 Shufflon-specific DNA recombinase insig. 31 53
  Alteromonas macleodii MIT1002 MIT1002_03389 site-specific tyrosine recombinase XerC insig. 26 66
  Enterobacter sp. TBS_079 MPMX20_03950 Tyrosine recombinase XerC strong 29 60
  Magnetospirillum magneticum AMB-1 AMB_RS07530 site-specific integrase insig. 28 51
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4150 Integrase insig. 28 51
  Dinoroseobacter shibae DFL-12 Dshi_0395 integrase family protein (RefSeq) insig. 28 70
  Escherichia coli ECOR38 HEPCGN_04445 xerD integrase insig. 25 69
  Pectobacterium carotovorum WPP14 HER17_RS07965 tyrosine-type recombinase/integrase insig. 26 58
  Escherichia coli ECRC100 OKFHMN_26010 xerD integrase insig. 25 69
  Escherichia coli ECRC101 MCAODC_19380 xerD integrase insig. 25 69
  Escherichia coli ECRC99 KEDOAH_02080 xerD integrase no data 25 69
  Shewanella sp. ANA-3 Shewana3_1244 phage integrase family protein (RefSeq) insig. 26 68
  Pseudomonas stutzeri RCH2 Psest_2903 Site-specific recombinase XerD insig. 27 63
  Desulfovibrio vulgaris Hildenborough JW710 DVU2197 site-specific recombinase, phage integrase family (TIGR) insig. 25 69
  Escherichia coli ECRC102 NIAGMN_02040 xerD integrase insig. 27 56
  Escherichia coli ECRC98 JDDGAC_00600 xerD integrase insig. 27 56
  Shewanella oneidensis MR-1 SO_A0045 site-specific recombinase, phage integrase family (NCBI) insig. 27 49
  Klebsiella pneumoniae MKP103 KDGMDA_02490 integrase insig. 26 63
  Sinorhizobium meliloti 1021 SMc02397 integrase insig. 29 55
  Marinobacter adhaerens HP15 HP15_703 phage integrase insig. 28 63
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_23350 integrase no data 36 33
  Pseudomonas segetis P6 ACVTMO_RS16945 tyrosine-type recombinase/integrase insig. 27 51
  Dinoroseobacter shibae DFL-12 Dshi_3213 integrase family protein (RefSeq) insig. 30 59
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07570 tyrosine-type recombinase/integrase insig. 28 70
  Azospirillum brasilense Sp245 AZOBR_RS30360 integrase insig. 28 46
  Castellaniella sp019104865 MT123 ABCV34_RS15835 site-specific integrase insig. 24 74
  Variovorax sp. SCN45 GFF7326 Integrase insig. 24 73
  Ralstonia solanacearum GMI1000 RS_RS13140 DUF4102 domain-containing protein insig. 24 76
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01645 Integrase no data 29 62
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_27510 Integrase no data 29 62
  Erwinia tracheiphila SCR3 LU632_RS01475 tyrosine-type recombinase/integrase sig. 29 62
  Bacteroides ovatus ATCC 8483 BACOVA_05324 site-specific recombinase, phage integrase family insig. 28 33
  Pantoea sp. MT58 IAI47_02995 tyrosine-type recombinase/integrase insig. 27 56
  Dickeya dianthicola 67-19 HGI48_RS02890 tyrosine-type recombinase/integrase insig. 26 58
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4439 Site-specific recombinase XerD insig. 24 55
  Erwinia amylovora T8 OLJFJH_03480 Integrase/recombinase includes phage integrase insig. 25 60
  Ralstonia solanacearum GMI1000 RS_RS07510 DUF4102 domain-containing protein insig. 41 18
  Dickeya dianthicola ME23 DZA65_RS04005 site-specific integrase insig. 26 69
  Shewanella amazonensis SB2B Sama_2739 integrase/recombinase XerD (RefSeq) strong 26 64
  Escherichia coli ECRC98 JDDGAC_09320 integrase strong 24 65
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2604 Site-specific recombinase XerD insig. 27 66
  Escherichia coli ECRC62 BNILDI_11500 xerD integrase cofit 25 63
  Dickeya dadantii 3937 DDA3937_RS04115 site-specific integrase insig. 25 69
  Acinetobacter radioresistens SK82 MPMX26_00483 hypothetical protein insig. 23 68
  Xanthobacter sp. DMC5 GFF2699 Tyrosine recombinase XerC insig. 26 61
  Variovorax sp. SCN45 GFF4896 Integrase insig. 24 73
  Lysobacter sp. OAE881 ABIE51_RS03035 tyrosine recombinase XerC strong 25 59
  Bosea sp. OAE506 ABIE41_RS19630 tyrosine-type recombinase/integrase insig. 27 55
  Castellaniella sp019104865 MT123 ABCV34_RS11900 tyrosine-type recombinase/integrase insig. 25 53
  Pectobacterium carotovorum WPP14 HER17_RS18625 tyrosine-type recombinase/integrase cofit 24 59
  Erwinia tracheiphila SCR3 LU632_RS03480 tyrosine-type recombinase/integrase insig. 25 58
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF774 putative integrase insig. 29 39
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02315 tyrosine recombinase XerC insig. 28 56
  Variovorax sp. SCN45 GFF6508 hypothetical protein insig. 28 43
  Desulfovibrio vulgaris Hildenborough JW710 DVU0236 site-specific recombinase, phage integrase family (TIGR) insig. 27 42
  Dickeya dianthicola 67-19 HGI48_RS04125 tyrosine-type recombinase/integrase insig. 26 49
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_05430 xerD integrase cofit 25 58
  Magnetospirillum magneticum AMB-1 AMB_RS20435 DUF4102 domain-containing protein insig. 26 60
  Rhodanobacter sp. FW510-T8 OKGIIK_15325 xerC tyrosine recombinase XerC insig. 27 56
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3696 Integrase insig. 29 34
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS11865 tyrosine-type recombinase/integrase insig. 27 57
  Marinobacter adhaerens HP15 HP15_79 phage integrase family protein insig. 26 57
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3443 Shufflon-specific DNA recombinase insig. 26 44
  Acinetobacter radioresistens SK82 MPMX26_00918 Prophage integrase IntA insig. 25 49
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS03200 site-specific integrase insig. 24 51
  Dickeya dianthicola 67-19 HGI48_RS05235 tyrosine-type recombinase/integrase insig. 30 31
  Pseudomonas putida KT2440 PP_5230 Tyrosine recombinase XerC strong 25 72
  Pseudomonas aeruginosa PUPa3 DQ20_RS55485 tyrosine-type recombinase/integrase insig. 25 59
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04515 tyrosine-type recombinase/integrase cofit 30 31
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15025 tyrosine recombinase XerC strong 27 56
  Shewanella oneidensis MR-1 SOA0044 site-specific recombinase, phage integrase family (NCBI ptt file) insig. 25 63
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05745 site-specific integrase insig. 27 33
  Magnetospirillum magneticum AMB-1 AMB_RS13625 integrase insig. 27 47
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS06960 site-specific integrase cofit 26 58
  Pseudomonas segetis P6 ACVTMO_RS04260 phage integrase insig. 25 60
  Pseudomonas putida KT2440 PP_3987 Site-specific recombinase, phage integrase family insig. 33 31
  Pseudomonas segetis P6 ACVTMO_RS06550 phage integrase insig. 25 58
  Bacteroides thetaiotaomicron VPI-5482 BT4544 transposase (NCBI ptt file) cofit 21 51
  Cellulophaga baltica 18 M666_RS12845 site-specific integrase insig. 26 38
  Pseudomonas sp. BP01 JOY50_RS22610 xerC tyrosine recombinase XerC insig. 27 53
  Pseudomonas syringae pv. syringae B728a Psyr_0185 tyrosine recombinase XerC subunit sig. 25 68
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0185 tyrosine recombinase XerC subunit sig. 25 68
  Escherichia coli ECRC98 JDDGAC_25445 integrase cofit 28 42
  Mycobacterium tuberculosis H37Rv Rv2894c Probable integrase/recombinase XerC no data 25 47
  Pseudomonas sp. S08-1 OH686_23050 hypothetical protein insig. 29 32
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0027 Site-specific recombinase XerD no data 26 44
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2548 Site-specific recombinase XerD no data 26 44
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4349 Site-specific recombinase XerD no data 26 44
  Azospirillum sp. SherDot2 MPMX19_00151 Tyrosine recombinase XerC insig. 25 51
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.847.1 Site-specific tyrosine recombinase no data 24 71
  Escherichia coli ECRC99 KEDOAH_04495 tyrosine-type recombinase/integrase no data 22 53
  Xanthobacter sp. DMC5 GFF3621 Tyrosine recombinase XerC insig. 30 34
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_17510 integrase cofit 29 31
  Bacteroides ovatus ATCC 8483 BACOVA_04157 site-specific recombinase, phage integrase family insig. 29 31
  Rhodopseudomonas palustris CGA009 TX73_021145 site-specific integrase insig. 28 64
  Erwinia tracheiphila SCR3 LU632_RS06490 site-specific integrase insig. 29 31
  Rahnella sp. WP5 EX31_RS18465 tyrosine-type recombinase/integrase insig. 25 60
  Escherichia coli ECRC100 OKFHMN_23690 fimB site-specific integrase cofit 22 53
  Escherichia coli ECRC101 MCAODC_14740 fimB site-specific integrase insig. 22 53
  Escherichia coli ECRC102 NIAGMN_21455 fimB site-specific integrase insig. 22 53
  Escherichia coli ECRC98 JDDGAC_27645 fimB site-specific integrase insig. 22 53
  Pseudomonas fluorescens FW300-N2E3 AO353_27450 integrase insig. 30 39
  Variovorax sp. OAS795 ABID97_RS09560 tyrosine-type recombinase/integrase insig. 26 32
  Rhodanobacter denitrificans MT42 LRK55_RS08300 tyrosine recombinase XerC strong 26 54
  Acinetobacter radioresistens SK82 MPMX26_00169 Tyrosine recombinase XerD no data 25 70
  Escherichia fergusonii Becca EFB2_01976 Prophage integrase IntA insig. 25 55
  Escherichia coli Nissle 1917 ECOLIN_RS11220 site-specific integrase insig. 25 55
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS02970 tyrosine-type recombinase/integrase insig. 25 49
  Pseudomonas aeruginosa PA14 IKLFDK_12665 integrase sig. 25 68
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01510 Integrase cofit 24 57
  Escherichia coli ECOR38 HEPCGN_02265 fimB site-specific integrase insig. 22 53
  Pseudomonas stutzeri RCH2 Psest_3767 tyrosine recombinase XerC strong 27 68
  Pseudomonas stutzeri RCH2 Psest_4123 Site-specific recombinase XerD sig. 25 58
  Xanthobacter sp. DMC5 GFF2134 Prophage integrase IntA insig. 36 25
  Bifidobacterium breve UCC2003 BBR_RS16655 tyrosine recombinase XerC strong 26 35
  Kangiella aquimarina DSM 16071 B158DRAFT_0244 tyrosine recombinase XerC subunit strong 27 37
  Rahnella sp. WP5 EX31_RS13480 site-specific tyrosine recombinase XerD strong 23 59
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2757 Integrase insig. 31 29
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_08780 xerC tyrosine recombinase XerC no data 25 68
  Pseudomonas fluorescens FW300-N2E3 AO353_09050 recombinase XerC sig. 24 71
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD no data 23 59
  Erwinia tracheiphila SCR3 LU632_RS24135 xerC tyrosine recombinase XerC no data 25 68
  Pseudomonas aeruginosa MRSN321 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC strong 26 48
  Pseudomonas aeruginosa PA14 IKLFDK_27050 tyrosine recombinase XerC strong 26 48
  Pseudomonas aeruginosa PUPa3 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC strong 26 48
  Escherichia coli ECRC100 OKFHMN_14420 xerC tyrosine recombinase XerC insig. 25 63
  Escherichia coli ECRC101 MCAODC_04925 xerC tyrosine recombinase XerC no data 25 63
  Escherichia coli ECRC102 NIAGMN_12175 xerC tyrosine recombinase XerC no data 25 63
  Escherichia coli ECRC98 JDDGAC_18045 xerC tyrosine recombinase XerC no data 25 63
  Escherichia coli ECRC99 KEDOAH_13730 xerC tyrosine recombinase XerC no data 25 63
  Magnetospirillum magneticum AMB-1 AMB_RS18455 site-specific integrase insig. 26 45
  Escherichia fergusonii Becca EFB2_04826 Tyrosine recombinase XerC strong 24 56
  Escherichia coli ECOR27 NOLOHH_06550 xerC tyrosine recombinase XerC sig. 24 56
  Escherichia coli ECOR38 HEPCGN_13125 xerC tyrosine recombinase XerC cofit 24 56
  Escherichia coli ECRC62 BNILDI_04985 xerC tyrosine recombinase XerC insig. 24 56
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04239 Tyrosine recombinase XerC insig. 24 56
  Escherichia coli Nissle 1917 ECOLIN_RS21875 tyrosine recombinase XerC strong 24 56
  Escherichia coli BW25113 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) strong 24 56
  Synechocystis sp000284455 PCC 6803 SGL_RS01640 site-specific integrase insig. 24 33
  Escherichia coli BL21 ECD_03687 site-specific tyrosine recombinase sig. 24 56
  Enterobacter asburiae PDN3 EX28DRAFT_4480 tyrosine recombinase XerC no data 24 67
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF239 Tyrosine recombinase XerC no data 24 56
  Pseudomonas sp. SVBP6 COO64_RS06525 site-specific integrase insig. 26 53
  Enterobacter sp. TBS_079 MPMX20_02933 Putative defective protein IntQ cofit 24 40
  Erwinia tracheiphila SCR3 LU632_RS05975 xerD site-specific tyrosine recombinase XerD no data 23 59
  Rhodanobacter denitrificans MT42 LRK55_RS09060 site-specific integrase insig. 26 31
  Rahnella sp. WP5 EX31_RS15165 tyrosine recombinase XerC strong 24 58
  Shewanella oneidensis MR-1 SO1471 site-specific recombinase, phage integrase family (NCBI ptt file) insig. 25 57
  Pseudomonas protegens RBAN4 FABNJH_17755 Core-binding (CB) domain-containing protein insig. 30 30
  Pectobacterium carotovorum WPP14 HER17_RS01350 tyrosine recombinase XerC strong 24 50
  Erwinia amylovora T8 OLJFJH_06415 tyrosine recombinase XerC strong 25 68
  Desulfovibrio vulgaris Miyazaki F DvMF_0767 integrase family protein (RefSeq) insig. 28 35
  Pseudomonas sp. DMC3 GFF370 Tyrosine recombinase XerC cofit 25 50
  Pseudomonas aeruginosa MRSN321 DY961_RS04210 tyrosine-type recombinase/integrase sig. 30 31
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05657 Tyrosine recombinase XerC cofit 24 50
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS08535 tyrosine recombinase XerC insig. 26 54