| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Dickeya dianthicola ME23 | DZA65_RS07855 | | hydrogenase 4 subunit B | insig. | 100 | 100 |
| o | Dickeya dianthicola 67-19 | HGI48_RS07345 | | hydrogenase 4 subunit B | insig. | 99 | 99 |
| o | Dickeya dadantii 3937 | DDA3937_RS07470 | | hydrogenase 4 subunit B | insig. | 98 | 98 |
| o | Escherichia coli ECRC100 | OKFHMN_21895 | hyfB | hydrogenase 4 subunit B | cofit | 61 | 98 |
| o | Escherichia coli ECRC101 | MCAODC_12425 | hyfB | hydrogenase 4 subunit B | insig. | 61 | 98 |
| o | Escherichia coli ECRC102 | NIAGMN_19665 | hyfB | hydrogenase 4 subunit B | insig. | 61 | 98 |
| o | Escherichia coli ECRC98 | JDDGAC_25840 | hyfB | hydrogenase 4 subunit B | insig. | 61 | 98 |
| o | Escherichia coli ECRC99 | KEDOAH_06325 | hyfB | hydrogenase 4 subunit B | no data | 61 | 98 |
| o | Escherichia coli ECOR27 | NOLOHH_13555 | hyfB | hydrogenase 4 subunit B | insig. | 61 | 98 |
| o | Escherichia coli ECRC62 | BNILDI_12365 | hyfB | hydrogenase 4 subunit B | insig. | 61 | 98 |
| o | Escherichia coli BL21 | ECD_02374 | | hydrogenase 4, membrane subunit | insig. | 61 | 98 |
| o | Escherichia coli BW25113 | b2482 | hyfB | NADH dehydrogenase subunit N (NCBI) | insig. | 61 | 98 |
| o | Escherichia coli ECOR38 | HEPCGN_21065 | hyfB | hydrogenase 4 subunit B | insig. | 60 | 98 |
| o | Azospirillum sp. SherDot2 | MPMX19_03515 | | Hydrogenase-4 component B | insig. | 61 | 88 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01246 | | Hydrogenase-4 component B | insig. | 60 | 66 |
| | Rahnella sp. WP5 | EX31_RS19910 | | NADH dehydrogenase | insig. | 47 | 78 |
| | Escherichia coli ECRC100 | OKFHMN_20580 | hycC | formate hydrogenlyase subunit 3 | cofit | 43 | 74 |
| | Escherichia coli ECRC101 | MCAODC_11105 | hycC | formate hydrogenlyase subunit 3 | insig. | 43 | 74 |
| | Escherichia coli ECRC102 | NIAGMN_18350 | hycC | formate hydrogenlyase subunit 3 | cofit | 43 | 74 |
| | Escherichia coli ECRC98 | JDDGAC_24245 | hycC | formate hydrogenlyase subunit 3 | insig. | 43 | 74 |
| | Escherichia coli ECOR27 | NOLOHH_12425 | hycC | formate hydrogenlyase subunit 3 | insig. | 43 | 74 |
| | Escherichia fergusonii Becca | EFB2_01200 | | NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic | cofit | 43 | 74 |
| | Escherichia coli BW25113 | b2723 | hycC | NADH dehydrogenase subunit N (NCBI) | sig. | 43 | 74 |
| | Escherichia coli ECRC62 | BNILDI_10975 | hycC | formate hydrogenlyase subunit 3 | insig. | 43 | 74 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS15215 | | formate hydrogenlyase subunit 3 | insig. | 43 | 74 |
| | Escherichia coli BL21 | ECD_02573 | | hydrogenase 3, membrane subunit | insig. | 43 | 74 |
| | Escherichia coli ECOR38 | HEPCGN_19770 | hycC | formate hydrogenlyase subunit 3 | insig. | 43 | 74 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01011 | | NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic | insig. | 43 | 74 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_03000 | | formate hydrogenlyase subunit 3 | insig. | 38 | 89 |
| | Escherichia coli ECRC99 | KEDOAH_07555 | hycC | formate hydrogenlyase subunit 3 | no data | 43 | 74 |
| o | Klebsiella michiganensis M5al | BWI76_RS22330 | | formate hydrogenlyase subunit 3 | insig. | 40 | 89 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4716 | | Formate hydrogenlyase subunit 3 | insig. | 40 | 85 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2814 | | Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit | insig. | 42 | 75 |
| o | Enterobacter sp. TBS_079 | MPMX20_03608 | | Hydrogenase-4 component B | insig. | 40 | 85 |
| o | Serratia liquefaciens MT49 | IAI46_12530 | | proton-conducting membrane transporter | insig. | 43 | 83 |
| o | Xanthobacter sp. DMC5 | GFF2057 | | Hydrogenase-4 component B | insig. | 39 | 86 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS01070 | | hydrogenase 4 subunit B | cofit | 38 | 87 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS17305 | | hydrogenase 4 subunit B | strong | 37 | 85 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS17530 | | hydrogenase 4 subunit B | cofit | 37 | 85 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_07585 | hyfB | hydrogenase 4 subunit B | insig. | 35 | 94 |
| o | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS11710 | | hydrogenase 4 subunit B | insig. | 37 | 85 |
| o | Rhodospirillum rubrum S1H | Rru_A0315 | | NADH dehydrogenase (quinone) (NCBI) | insig. | 35 | 85 |
| o | Mycobacterium tuberculosis H37Rv | Rv0083 | | Probable oxidoreductase | insig. | 35 | 63 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_3194 | | NADH dehydrogenase (quinone) (RefSeq) | strong | 34 | 62 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01247 | | Hydrogenase-4 component B | insig. | 63 | 29 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2286 | | hydrogenase, CooM subunit, putative (TIGR) | strong | 32 | 63 |
| | Rhodospirillum rubrum S1H | Rru_A1420 | | NADH dehydrogenase (quinone) (NCBI) | insig. | 33 | 60 |
| | Rhodospirillum rubrum S1H | Rru_A0320 | | NADH dehydrogenase (quinone) (NCBI) | insig. | 32 | 49 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS09035 | | NADH-quinone oxidoreductase subunit L | sig. | 29 | 60 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_3194 | | NADH dehydrogenase (quinone) (RefSeq) | strong | 28 | 61 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS13300 | | NADH-quinone oxidoreductase subunit L | strong | 29 | 62 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS08505 | | NADH-quinone oxidoreductase subunit L | insig. | 30 | 62 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01240 | | NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic | insig. | 30 | 51 |
| | Escherichia coli BL21 | ECD_02378 | | hydrogenase 4, membrane subunit | insig. | 30 | 51 |
| | Escherichia coli BW25113 | b2486 | hyfF | NADH dehydrogenase subunit N (NCBI) | insig. | 30 | 51 |
| | Escherichia coli ECOR27 | NOLOHH_13530 | hyfF | hydrogenase 4 subunit F | insig. | 29 | 51 |
| | Sinorhizobium meliloti 1021 | SMa1541 | | monovalent cation/H+ antiporter subunit D | insig. | 31 | 68 |
| | Escherichia coli ECRC100 | OKFHMN_21875 | hyfF | hydrogenase 4 subunit F | cofit | 30 | 51 |
| | Escherichia coli ECRC101 | MCAODC_12405 | hyfF | hydrogenase 4 subunit F | insig. | 30 | 51 |
| | Escherichia coli ECRC102 | NIAGMN_19645 | hyfF | hydrogenase 4 subunit F | insig. | 30 | 51 |
| | Escherichia coli ECRC98 | JDDGAC_25820 | hyfF | hydrogenase 4 subunit F | insig. | 30 | 51 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04855 | | proton-translocating NADH-quinone oxidoreductase, chain L | cofit | 30 | 62 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_14045 | | Cation:proton antiporter | sig. | 32 | 67 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2201 | | multisubunit sodium/proton antiporter, MrpD subunit (TC 2.A.63.1) | strong | 26 | 71 |
| | Escherichia coli ECRC99 | KEDOAH_06345 | hyfF | hydrogenase 4 subunit F | no data | 29 | 51 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4060 | | NADH dehydrogenase I, chain L (NCBI ptt file) | strong | 31 | 61 |
| | Dickeya dianthicola ME23 | DZA65_RS07835 | | hydrogenase 4 subunit F | insig. | 30 | 50 |
| | Marinobacter adhaerens HP15 | HP15_2587 | | monovalent cation/H+ antiporter subunit A | sig. | 32 | 61 |
| | Dickeya dianthicola 67-19 | HGI48_RS07325 | | hydrogenase 4 subunit F | insig. | 30 | 50 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS17115 | | NADH-quinone oxidoreductase subunit L | no data | 31 | 62 |
| | Dickeya dadantii 3937 | DDA3937_RS07450 | | hydrogenase 4 subunit F | insig. | 30 | 50 |
| | Escherichia coli ECOR38 | HEPCGN_21045 | hyfF | hydrogenase 4 subunit F | insig. | 29 | 51 |
| | Pseudomonas stutzeri RCH2 | Psest_3887 | | Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit | insig. | 32 | 51 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.589.1 | | hypothetical protein | insig. | 31 | 62 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1603 | | putative monovalent cation/H+ antiporter subunit D (RefSeq) | strong | 29 | 60 |
| | Rhodospirillum rubrum S1H | Rru_A1420 | | NADH dehydrogenase (quinone) (NCBI) | insig. | 29 | 63 |
| | Rhodospirillum rubrum S1H | Rru_A0314 | | NADH dehydrogenase (quinone) (NCBI) | cofit | 31 | 61 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS07595 | | monovalent cation/H+ antiporter subunit A | strong | 32 | 54 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS00910 | | monovalent cation/H+ antiporter subunit A | cofit | 31 | 67 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS07335 | | monovalent cation/H+ antiporter subunit A | cofit | 32 | 56 |
| | Azospirillum sp. SherDot2 | MPMX19_03511 | | NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic | insig. | 31 | 51 |
| | Agrobacterium fabrum C58 | Atu1282 | | NADH dehydrogenase I chain M | no data | 30 | 43 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_14775 | | Na+/H+ antiporter subunit D | insig. | 26 | 73 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2202 | | multisubunit sodium/proton antiporter, MrpD subunit (TC 2.A.63.1) | strong | 33 | 49 |
| | Escherichia coli ECRC62 | BNILDI_12335 | hyfF | hydrogenase 4 subunit F | insig. | 29 | 51 |
| | Rhodospirillum rubrum S1H | Rru_A1634 | | NADH dehydrogenase (quinone) (NCBI) | cofit | 32 | 57 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS17195 | | proton-conducting transporter membrane subunit | insig. | 29 | 48 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS17720 | | NADH dehydrogenase | insig. | 29 | 48 |
| | Rhodospirillum rubrum S1H | Rru_A1567 | | Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) | no data | 30 | 41 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS23590 | | NADH-quinone oxidoreductase subunit L | no data | 31 | 59 |
| | Rhodospirillum rubrum S1H | Rru_A1635 | | NADH dehydrogenase (quinone) (NCBI) | cofit | 30 | 56 |
| | Mycobacterium tuberculosis H37Rv | Rv3156 | | Probable NADH dehydrogenase I (chain L) NuoL (NADH-ubiquinone oxidoreductase chain L) | strong | 31 | 61 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2286 | | hydrogenase, CooM subunit, putative (TIGR) | strong | 29 | 60 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1977 | ndhF1 | NAD(P)H-quinone oxidoreductase subunit F | strong | 30 | 58 |
| | Azospirillum brasilense Sp245 | AZOBR_RS07220 | | NADH:ubiquinone oxidoreductase subunit L | no data | 28 | 71 |
| | Lysobacter sp. OAE881 | ABIE51_RS09895 | | monovalent cation/H+ antiporter subunit A | insig. | 29 | 66 |
| | Xanthobacter sp. DMC5 | GFF1239 | | NADH-quinone oxidoreductase subunit L | no data | 29 | 61 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c10530 | | NADH-quinone oxidoreductase subunit L | no data | 28 | 61 |
| | Azospirillum sp. SherDot2 | MPMX19_01735 | | NADH-quinone oxidoreductase subunit L | no data | 30 | 61 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS15725 | | NuoM family protein | no data | 30 | 50 |