Homologs of Shew_0330 from Shewanella loihica PV-4

nifR3 family TIM-barrel protein (RefSeq)
SEED: tRNA dihydrouridine synthase B (EC 1.-.-.-)
KEGG: tRNA-dihydrouridine synthase B

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) strong 100 100
o Shewanella oneidensis MR-1 SO0394 conserved hypothetical protein (NCBI ptt file) strong 86 100
o Shewanella sp. ANA-3 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) strong 86 100
o Shewanella amazonensis SB2B Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) strong 81 100
o Serratia liquefaciens MT49 IAI46_22775 tRNA dihydrouridine synthase DusB cofit 68 99
o Enterobacter sp. TBS_079 MPMX20_04169 tRNA-dihydrouridine synthase B strong 66 99
o Alteromonas macleodii MIT1002 MIT1002_03957 putative tRNA-dihydrouridine synthase sig. 67 99
o Rahnella sp. WP5 EX31_RS12180 tRNA dihydrouridine synthase DusB cofit 67 99
o Klebsiella michiganensis M5al BWI76_RS25565 tRNA dihydrouridine synthase DusB no data 66 99
o Pectobacterium carotovorum WPP14 HER17_RS20235 tRNA dihydrouridine synthase DusB cofit 66 99
o Escherichia coli BL21 ECD_03118 tRNA-dihydrouridine synthase B strong 66 99
o Escherichia fergusonii Becca EFB2_00564 tRNA-dihydrouridine synthase B cofit 66 99
o Escherichia coli ECOR27 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB strong 66 99
o Escherichia coli ECOR38 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB strong 66 99
o Escherichia coli ECRC100 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB strong 66 99
o Escherichia coli ECRC101 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB strong 66 99
o Escherichia coli ECRC102 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB strong 66 99
o Escherichia coli ECRC62 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB cofit 66 99
o Escherichia coli Nissle 1917 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB strong 66 99
o Escherichia coli BW25113 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) strong 66 99
o Dickeya dianthicola ME23 DZA65_RS01355 tRNA dihydrouridine synthase DusB cofit 65 99
o Dickeya dadantii 3937 DDA3937_RS01375 tRNA dihydrouridine synthase DusB strong 65 99
o Klebsiella pneumoniae MKP103 KDGMDA_06325 tRNA dihydrouridine synthase DusB sig. 65 99
o Erwinia amylovora T8 OLJFJH_06855 tRNA dihydrouridine synthase DusB strong 65 99
o Dickeya dianthicola 67-19 HGI48_RS01295 tRNA dihydrouridine synthase DusB insig. 65 99
o Enterobacter asburiae PDN3 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family insig. 65 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13500 dusB tRNA dihydrouridine synthase DusB cofit 64 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_01495 tRNA dihydrouridine synthase DusB insig. 65 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS10980 tRNA dihydrouridine synthase DusB cofit 64 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase strong 66 99
o Pantoea sp. MT58 IAI47_02385 tRNA dihydrouridine synthase DusB sig. 64 99
o Pseudomonas sp. S08-1 OH686_07610 tRNA-dihydrouridine synthase DusB sig. 62 99
o Escherichia coli ECRC98 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB strong 66 89
o Escherichia coli ECRC99 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB no data 66 89
o Pseudomonas segetis P6 ACVTMO_RS20360 dusB tRNA dihydrouridine synthase DusB sig. 62 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00445 putative tRNA-dihydrouridine synthase strong 65 88
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 66 87
o Pseudomonas stutzeri RCH2 Psest_1016 putative TIM-barrel protein, nifR3 family sig. 61 99
o Pseudomonas sp. RS175 PFR28_05216 tRNA-dihydrouridine synthase B sig. 63 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) strong 63 100
o Pseudomonas fluorescens FW300-N2C3 AO356_08215 tRNA-dihydrouridine synthase B strong 63 100
o Lysobacter sp. OAE881 ABIE51_RS16450 tRNA dihydrouridine synthase DusB insig. 60 99
o Pseudomonas sp. DMC3 GFF3310 tRNA-dihydrouridine synthase B cofit 63 100
o Marinobacter adhaerens HP15 HP15_3225 tRNA-dihydrouridine synthase B sig. 59 98
o Methylophilus sp. DMC18 GFF1646 tRNA-dihydrouridine synthase B cofit 60 99
o Pseudomonas fluorescens FW300-N2E3 AO353_13660 tRNA-dihydrouridine synthase B sig. 63 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) strong 63 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) sig. 63 100
o Pseudomonas sp. BP01 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB cofit 61 99
o Ralstonia solanacearum PSI07 RPSI07_RS21520 tRNA dihydrouridine synthase DusB insig. 60 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS07650 tRNA dihydrouridine synthase DusB insig. 60 99
o Pseudomonas putida KT2440 PP_4820 tRNA-dihydrouridine synthase B sig. 61 99
o Pseudomonas aeruginosa PA14 IKLFDK_29300 tRNA dihydrouridine synthase DusB sig. 61 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB insig. 60 99
o Ralstonia solanacearum UW163 UW163_RS01890 tRNA dihydrouridine synthase DusB insig. 60 99
o Pseudomonas aeruginosa MRSN321 DY961_RS10040 dusB;go_function=catalytic tRNA dihydrouridine synthase DusB sig. 61 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS52015 dusB;go_function=catalytic tRNA dihydrouridine synthase DusB sig. 61 100
o Pseudomonas fluorescens SBW25 PFLU_RS03025 tRNA dihydrouridine synthase DusB insig. 62 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS03025 tRNA dihydrouridine synthase DusB strong 62 100
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4303.1 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 60 99
o Pseudomonas sp. SVBP6 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB insig. 63 99
o Ralstonia solanacearum GMI1000 RS_RS02515 tRNA dihydrouridine synthase DusB insig. 60 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase insig. 59 98
o Pseudomonas simiae WCS417 PS417_02950 tRNA-dihydrouridine synthase B sig. 62 100
o Pseudomonas orientalis W4I3 QF045_RS05985 tRNA dihydrouridine synthase DusB insig. 61 100
o Pseudomonas syringae pv. syringae B728a Psyr_4404 tRNA-U20-dihydrouridine synthase insig. 61 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4404 tRNA-U20-dihydrouridine synthase insig. 61 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00822 tRNA-dihydrouridine synthase B cofit 61 100
o Castellaniella sp019104865 MT123 ABCV34_RS07960 tRNA dihydrouridine synthase DusB insig. 56 99
o Variovorax sp. OAS795 ABID97_RS24735 tRNA dihydrouridine synthase DusB insig. 59 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS26770 tRNA dihydrouridine synthase DusB insig. 57 98
o Variovorax sp. SCN45 GFF2144 tRNA-dihydrouridine synthase DusB cofit 58 99
o Paraburkholderia graminis OAS925 ABIE53_003489 tRNA-dihydrouridine synthase B insig. 59 98
o Rhodanobacter sp. FW510-T8 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB insig. 61 99
o Rhodanobacter denitrificans MT42 LRK55_RS11875 tRNA dihydrouridine synthase DusB cofit 61 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12140 tRNA dihydrouridine synthase DusB insig. 61 100
o Burkholderia phytofirmans PsJN BPHYT_RS16585 tRNA-dihydrouridine synthase B insig. 58 98
o Cupriavidus basilensis FW507-4G11 RR42_RS02730 tRNA-dihydrouridine synthase B insig. 59 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS11525 tRNA dihydrouridine synthase DusB insig. 59 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS16445 tRNA dihydrouridine synthase DusB insig. 61 99
o Dechlorosoma suillum PS Dsui_1593 putative TIM-barrel protein, nifR3 family strong 55 100
o Herbaspirillum seropedicae SmR1 HSERO_RS02050 tRNA-dihydrouridine synthase B sig. 57 98
o Acinetobacter baumannii LAC-4 RR41_RS04995 tRNA dihydrouridine synthase DusB insig. 57 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 55 99
o Acinetobacter radioresistens SK82 MPMX26_02127 tRNA-dihydrouridine synthase B insig. 54 97
o Acidovorax sp. GW101-3H11 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) sig. 56 99
o Magnetospirillum magneticum AMB-1 AMB_RS11940 tRNA dihydrouridine synthase DusB insig. 47 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0140 tRNA-U20-dihydrouridine synthase strong 42 99
o Azospirillum brasilense Sp245 AZOBR_RS14420 tRNA-dihydrouridine synthase sig. 43 98
o Sphingobium sp. HT1-2 GFF1150 tRNA-dihydrouridine synthase DusB cofit 44 96
o Azospirillum sp. SherDot2 MPMX19_01110 tRNA-dihydrouridine synthase B insig. 41 100
o Agrobacterium fabrum C58 Atu1444 nitrogen regulation protein strong 46 90
o Rhizobium sp. OAE497 ABIE40_RS09080 tRNA dihydrouridine synthase DusB insig. 44 99
o Xanthobacter sp. DMC5 GFF850 tRNA-dihydrouridine synthase B insig. 44 93
o Rhodopseudomonas palustris CGA009 TX73_013410 tRNA dihydrouridine synthase DusB insig. 44 91
o Sinorhizobium meliloti 1021 SMc01041 NIFR3-like protein strong 43 90
o Synechocystis sp000284455 PCC 6803 SGL_RS14330 tRNA dihydrouridine synthase DusB cofit 42 98
o Bacteroides stercoris CC31F HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB cofit 39 97
o Phaeobacter inhibens DSM 17395 PGA1_c14770 tRNA-dihydrouridine synthase DusB strong 44 90
o Bacteroides ovatus ATCC 8483 BACOVA_02724 TIM-barrel protein, nifR3 family sig. 38 99