| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Bacteroides thetaiotaomicron VPI-5482 | BT3187 | | penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | sig. | 100 | 100 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_02892 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 83 | 100 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS01785 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 61 | 100 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS05970 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 47 | 99 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS11060 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | sig. | 46 | 99 |
| | Pseudomonas simiae WCS417 | PS417_05005 | | penicillin-binding protein | insig. | 29 | 91 |
| | Shewanella oneidensis MR-1 | SO2394 | dacB | penicillin-binding protein 4 (NCBI ptt file) | insig. | 27 | 95 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05075 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 28 | 93 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05075 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 28 | 93 |
| | Pseudomonas orientalis W4I3 | QF045_RS07985 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 27 | 93 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01208 | | D-alanyl-D-alanine carboxypeptidase DacC | cofit | 27 | 98 |
| | Shewanella sp. ANA-3 | Shewana3_1985 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | insig. | 28 | 89 |
| | Dickeya dadantii 3937 | DDA3937_RS03010 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 90 |
| | Dickeya dianthicola ME23 | DZA65_RS03175 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 90 |
| | Dickeya dianthicola 67-19 | HGI48_RS03180 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 90 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS18325 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 89 |
| | Escherichia coli ECRC62 | BNILDI_01695 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 87 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00518 | | D-alanyl-D-alanine carboxypeptidase DacB | insig. | 27 | 89 |
| | Escherichia coli BL21 | ECD_03047 | | D-alanyl-D-alanine carboxypeptidase | insig. | 27 | 87 |
| | Escherichia coli ECOR38 | HEPCGN_16915 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 89 |
| | Escherichia coli BW25113 | b3182 | dacB | D-alanyl-D-alanine carboxypeptidase (NCBI) | strong | 27 | 89 |
| | Escherichia coli ECOR27 | NOLOHH_09840 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 87 |
| | Escherichia fergusonii Becca | EFB2_00641 | | D-alanyl-D-alanine carboxypeptidase DacB | insig. | 27 | 89 |
| | Escherichia coli ECRC100 | OKFHMN_18040 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | cofit | 27 | 89 |
| | Escherichia coli ECRC101 | MCAODC_08560 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 89 |
| | Escherichia coli ECRC102 | NIAGMN_15800 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 89 |
| | Escherichia coli ECRC98 | JDDGAC_21665 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 27 | 89 |
| | Escherichia coli ECRC99 | KEDOAH_10110 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | no data | 27 | 89 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2924 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | insig. | 25 | 91 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1934 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | strong | 29 | 86 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS00485 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 27 | 90 |
| | Enterobacter sp. TBS_079 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | insig. | 25 | 91 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_05980 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 94 |
| | Klebsiella pneumoniae MRSN742743 | GJGHJB_00516 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 94 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | insig. | 25 | 91 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1299 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | insig. | 26 | 93 |
| | Pectobacterium carotovorum WPP14 | HER17_RS18335 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 87 |
| | Klebsiella michiganensis M5al | BWI76_RS25165 | | serine-type D-Ala-D-Ala carboxypeptidase | sig. | 25 | 94 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16225 | | D-alanyl-D-alanine carboxypeptidase | sig. | 27 | 91 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_13860 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 90 |
| | Erwinia amylovora T8 | OLJFJH_07180 | | serine-type D-Ala-D-Ala carboxypeptidase | cofit | 25 | 87 |
| | Erwinia tracheiphila SCR3 | LU632_RS21170 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 90 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS14350 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | cofit | 25 | 95 |
| | Serratia liquefaciens MT49 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 26 | 87 |
| | Shewanella loihica PV-4 | Shew_1962 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | insig. | 25 | 91 |
| | Paraburkholderia graminis OAS925 | ABIE53_003419 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | strong | 27 | 91 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS17305 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | cofit | 25 | 90 |
| | Pantoea sp. MT58 | IAI47_17085 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 90 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04181 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | sig. | 27 | 85 |
| | Rahnella sp. WP5 | EX31_RS08600 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 25 | 89 |
| | Sphingobium sp. HT1-2 | GFF4681 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | cofit | 27 | 74 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS17360 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | cofit | 24 | 86 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS02470 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | cofit | 25 | 91 |
| | Shewanella amazonensis SB2B | Sama_1744 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | insig. | 26 | 88 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2231 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) | insig. | 27 | 100 |
| | Cellulophaga baltica 18 | M666_RS10815 | | D-alanyl-D-alanine carboxypeptidase | insig. | 24 | 87 |
| | Methylophilus sp. DMC18 | GFF2555 | | D-alanyl-D-alanine carboxypeptidase DacB | insig. | 25 | 100 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | sig. | 25 | 93 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21540 | | peptidase S13 | insig. | 27 | 89 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_15505 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | sig. | 26 | 83 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | insig. | 25 | 81 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | strong | 25 | 81 |
| | Pseudomonas aeruginosa MRSN321 | PFGADD_01920 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase DacB | strong | 25 | 83 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_01959 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase DacB | sig. | 25 | 83 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | sig. | 24 | 81 |
| | Variovorax sp. SCN45 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | insig. | 26 | 89 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS15375 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | cofit | 24 | 85 |
| | Pseudomonas orientalis W4I3 | QF045_RS22725 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | cofit | 24 | 81 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | strong | 24 | 81 |
| | Ralstonia solanacearum GMI1000 | RS_RS02925 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 24 | 85 |
| | Pseudomonas sp. S08-1 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | cofit | 24 | 81 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | strong | 24 | 81 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS12220 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 23 | 85 |
| | Ralstonia solanacearum UW163 | UW163_RS01390 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 23 | 85 |
| | Dechlorosoma suillum PS | Dsui_0294 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | cofit | 26 | 81 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS18750 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 25 | 88 |
| | Pseudomonas protegens RBAN4 | FABNJH_09765 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 24 | 81 |
| | Pseudomonas stutzeri RCH2 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | sig. | 24 | 92 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS08110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | strong | 24 | 85 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS21110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 23 | 85 |
| | Pseudomonas sp. RS175 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | sig. | 24 | 81 |
| | Pseudomonas segetis P6 | ACVTMO_RS14980 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase | cofit | 24 | 83 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | strong | 23 | 81 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | strong | 23 | 81 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04329 | | hypothetical protein | cofit | 24 | 81 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | insig. | 23 | 96 |
| | Pseudomonas putida KT2440 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | sig. | 25 | 81 |
| | Pseudomonas simiae WCS417 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | insig. | 23 | 81 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3731 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) | insig. | 23 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS05285 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 23 | 81 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS09795 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | strong | 43 | 22 |
| | Pseudomonas sp. BP01 | JOY50_RS22085 | dacB | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 24 | 81 |
| | Variovorax sp. OAS795 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 25 | 92 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c26270 | | putative D-alanyl-D-alanine carboxypeptidase | strong | 25 | 91 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | insig. | 23 | 79 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS15410 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 27 | 41 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS11650 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 24 | 83 |
| | Mycobacterium tuberculosis H37Rv | Rv3627c | | Conserved protein | no data | 31 | 42 |
| | Marinobacter adhaerens HP15 | HP15_829 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | insig. | 23 | 82 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_03320 | | serine-type D-Ala-D-Ala carboxypeptidase | insig. | 22 | 92 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30880 | | peptidase S13 | insig. | 22 | 87 |
| | Pseudomonas sp. DMC3 | GFF5256 | | D-alanyl-D-alanine carboxypeptidase DacC | cofit | 27 | 34 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | strong | 30 | 27 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | cofit | 30 | 27 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | insig. | 30 | 35 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08695 | | peptidase S13 | cofit | 26 | 40 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04935 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | insig. | 23 | 86 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | cofit | 34 | 19 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | strong | 34 | 19 |
| | Pseudomonas sp. DMC3 | GFF5256 | | D-alanyl-D-alanine carboxypeptidase DacC | cofit | 33 | 19 |
| | Rhodospirillum rubrum S1H | Rru_A0132 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI) | insig. | 26 | 23 |
| | Variovorax sp. OAS795 | ABID97_RS13040 | | D-alanyl-D-alanine carboxypeptidase | insig. | 28 | 33 |
| | Rhodospirillum rubrum S1H | Rru_A0132 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI) | insig. | 26 | 35 |