Conservation of cofitness between RR42_RS07325 and RR42_RS05970 in Cupriavidus basilensis FW507-4G11

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07325 exodeoxyribonuclease III 1.0 RR42_RS05970 endonuclease III 0.57 20
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS13495 exodeoxyribonuclease III 0.83 ABZR87_RS09915 endonuclease III low > 80
Ralstonia solanacearum GMI1000 0.74 RS_RS08025 exodeoxyribonuclease III 0.84 RS_RS04975 endonuclease III low > 80
Ralstonia solanacearum UW163 0.74 UW163_RS15010 exodeoxyribonuclease III 0.83 UW163_RS11660 endonuclease III — —
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS01700 exodeoxyribonuclease III 0.83 RALBFv3_RS14195 endonuclease III low > 76
Ralstonia solanacearum PSI07 0.73 RPSI07_RS15785 exodeoxyribonuclease III 0.84 RPSI07_RS19265 endonuclease III low > 81
Paraburkholderia graminis OAS925 0.67 ABIE53_002802 exodeoxyribonuclease-3 0.77 ABIE53_001423 endonuclease-3 low > 113
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS12925 exodeoxyribonuclease III 0.76 BPHYT_RS06080 endonuclease IV low > 109
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00456 Exodeoxyribonuclease III 0.77 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III low > 103
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS05680 exodeoxyribonuclease III 0.78 QEN71_RS24560 endonuclease III low > 153
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS15630 exodeoxyribonuclease III 0.75 HSERO_RS08070 endonuclease IV 0.40 68
Castellaniella sp019104865 MT123 0.59 ABCV34_RS03115 exodeoxyribonuclease III 0.63 ABCV34_RS08465 endonuclease III low > 48
Acidovorax sp. GW101-3H11 0.57 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) — —
Variovorax sp. SCN45 0.57 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.69 GFF418 Endonuclease III (EC 4.2.99.18) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.68 GFF4003 Endonuclease III (EC 4.2.99.18) low > 90
Variovorax sp. OAS795 0.56 ABID97_RS09955 exodeoxyribonuclease III 0.71 ABID97_RS17315 endonuclease III 0.52 45
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.73 ABZR86_RS08185 endonuclease III 0.67 3
Dechlorosoma suillum PS 0.55 Dsui_0044 exodeoxyribonuclease III 0.74 Dsui_2985 endonuclease III low > 51
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_15390 xth exodeoxyribonuclease III 0.70 OKGIIK_04675 nth endonuclease III low > 52
Rhodanobacter denitrificans MT42 0.51 LRK55_RS08390 exodeoxyribonuclease III 0.72 LRK55_RS01640 endonuclease III low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS08625 exodeoxyribonuclease III 0.72 LRK54_RS01850 endonuclease III low > 59
Lysobacter sp. OAE881 0.50 ABIE51_RS01755 exodeoxyribonuclease III 0.71 ABIE51_RS07560 endonuclease III low > 62
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.75 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) low > 74
Synechococcus elongatus PCC 7942 0.44 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.31 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III low > 38
Magnetospirillum magneticum AMB-1 0.39 AMB_RS12755 exodeoxyribonuclease III 0.62 AMB_RS21105 endonuclease III low > 64
Bosea sp. OAE506 0.38 ABIE41_RS15705 exodeoxyribonuclease III 0.59 ABIE41_RS03410 endonuclease III low > 77
Azospirillum brasilense Sp245 0.38 AZOBR_RS15540 exodeoxyribonuclease III 0.62 AZOBR_RS01565 endonuclease III 0.78 7
Azospirillum sp. SherDot2 0.37 MPMX19_04331 Exodeoxyribonuclease 0.62 MPMX19_02500 Endonuclease III low > 112
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS16670 exodeoxyribonuclease III 0.39 CA265_RS00605 endonuclease III low > 88
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS02655 exodeoxyribonuclease III 0.56 A4249_RS15000 endonuclease III low > 48
Caulobacter crescentus NA1000 0.35 CCNA_02090 exodeoxyribonuclease III 0.54 CCNA_03847 endonuclease III low > 66
Rhodospirillum rubrum S1H 0.35 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.58 Rru_A0153 Endonuclease III/Nth (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_02090 exodeoxyribonuclease III 0.54 CCNA_03847 endonuclease III — —
Pseudomonas sp. RS175 0.34 PFR28_01207 Exodeoxyribonuclease III 0.70 PFR28_03349 Endonuclease III low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS19760 exodeoxyribonuclease III 0.42 ABZR88_RS16725 endonuclease III low > 71
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.71 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_01850 exodeoxyribonuclease III 0.70 AO356_18345 endonuclease III low > 104
Pseudomonas stutzeri RCH2 0.34 Psest_1187 exodeoxyribonuclease III 0.72 Psest_3118 endonuclease III low > 67
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.71 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) 0.69 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) low > 87
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.60 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 68
Pseudomonas putida KT2440 0.32 PP_2707 putative Exodeoxyribonuclease III 0.68 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Pseudomonas sp. S08-1 0.32 OH686_23775 exodeoxyribonuclease III 0.71 OH686_03910 endonuclease III low > 80
Dinoroseobacter shibae DFL-12 0.32 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.58 Dshi_3023 endonuclease III (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.31 PGA1_c11070 exodeoxyribonuclease III 0.55 PGA1_c29040 endonuclease III low > 62
Mycobacterium tuberculosis H37Rv 0.30 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) 0.27 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) low > 58
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_09315 exodeoxyribonuclease III 0.67 CSW01_05145 endonuclease III low > 62
Enterobacter sp. TBS_079 0.28 MPMX20_01864 Exodeoxyribonuclease III 0.70 MPMX20_02005 Endonuclease III low > 85
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.70 ECOLIN_RS09110 endonuclease III — —
Escherichia fergusonii Becca 0.28 EFB2_02244 Exodeoxyribonuclease III 0.70 EFB2_02359 Endonuclease III low > 86
Escherichia coli ECRC62 0.27 BNILDI_16200 xthA exodeoxyribonuclease III 0.70 BNILDI_16835 nth endonuclease III low > 75
Escherichia coli ECOR27 0.27 NOLOHH_17415 xthA exodeoxyribonuclease III 0.70 NOLOHH_18045 nth endonuclease III — —
Escherichia coli BL21 0.27 ECD_01718 exonuclease III 0.70 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01983 Exodeoxyribonuclease III 0.70 OHPLBJKB_02093 Endonuclease III low > 73
Escherichia coli BW25113 0.27 b1749 xthA exonuclease III (NCBI) 0.70 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Klebsiella michiganensis M5al 0.27 BWI76_RS11665 exodeoxyribonuclease III 0.69 BWI76_RS16385 endonuclease III — —
Escherichia coli ECRC98 0.27 JDDGAC_01475 xthA exodeoxyribonuclease III 0.69 JDDGAC_02115 nth endonuclease III low > 86
Escherichia coli ECRC101 0.27 MCAODC_18510 xthA exodeoxyribonuclease III 0.69 MCAODC_17885 nth endonuclease III low > 87
Escherichia coli ECRC99 0.27 KEDOAH_01210 xthA exodeoxyribonuclease III 0.69 KEDOAH_00580 nth endonuclease III — —
Escherichia coli ECRC100 0.27 OKFHMN_26900 xthA exodeoxyribonuclease III 0.69 OKFHMN_27525 nth endonuclease III low > 80
Escherichia coli ECRC102 0.27 NIAGMN_01165 xthA exodeoxyribonuclease III 0.69 NIAGMN_00540 nth endonuclease III — —
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1753 exodeoxyribonuclease III 0.69 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 76
Escherichia coli ECOR38 0.27 HEPCGN_05265 xthA exodeoxyribonuclease III 0.70 HEPCGN_05910 nth endonuclease III low > 87
Pectobacterium carotovorum WPP14 0.27 HER17_RS11085 exodeoxyribonuclease III 0.69 HER17_RS10860 endonuclease III low > 75
Pantoea sp. MT58 0.26 IAI47_08990 exodeoxyribonuclease III 0.69 IAI47_10475 endonuclease III low > 76
Rahnella sp. WP5 0.26 EX31_RS06330 exodeoxyribonuclease III 0.68 EX31_RS06590 endonuclease III low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.69 GFF3641 Endonuclease III (EC 4.2.99.18) low > 78
Serratia liquefaciens MT49 0.26 IAI46_14290 exodeoxyribonuclease III 0.68 IAI46_11455 endonuclease III low > 86
Dickeya dadantii 3937 0.26 DDA3937_RS10310 exodeoxyribonuclease III 0.69 DDA3937_RS10545 endonuclease III low > 74
Erwinia tracheiphila SCR3 0.26 LU632_RS12950 xthA exodeoxyribonuclease III 0.68 LU632_RS11305 nth endonuclease III low > 74
Dickeya dianthicola ME23 0.26 DZA65_RS10795 exodeoxyribonuclease III 0.69 DZA65_RS11025 endonuclease III low > 75
Dickeya dianthicola 67-19 0.26 HGI48_RS10320 exodeoxyribonuclease III 0.68 HGI48_RS10545 endonuclease III low > 71
Shewanella oneidensis MR-1 0.25 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.64 SO2514 nth endonuclease III (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_1503 exonuclease III (RefSeq) 0.64 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_2476 Exodeoxyribonuclease III 0.68 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_2476 Exodeoxyribonuclease III 0.68 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_27875 exonuclease III 0.71 AO353_04085 endonuclease III 0.22 86
Pseudomonas simiae WCS417 0.24 PS417_16980 exonuclease III 0.69 PS417_05655 endonuclease III low > 88
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_1291 exodeoxyribonuclease III 0.69 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 40
Shewanella loihica PV-4 0.24 Shew_2262 exonuclease III (RefSeq) 0.66 Shew_2072 endonuclease III (RefSeq) — —
Marinobacter adhaerens HP15 0.24 HP15_1776 exonuclease III 0.71 HP15_1285 endonuclease III low > 73
Pseudomonas fluorescens SBW25 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.70 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.70 PFLU_RS05740 endonuclease III low > 109
Alteromonas macleodii MIT1002 0.22 MIT1002_01652 Exodeoxyribonuclease III 0.31 MIT1002_01251 Endonuclease III low > 70
Shewanella amazonensis SB2B 0.21 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.64 Sama_1836 endonuclease III (RefSeq) low > 62

Not shown: 4 genomes with orthologs for RR42_RS07325 only; 11 genomes with orthologs for RR42_RS05970 only