Conservation of cofitness between Psyr_0185 and Psyr_2896 in Pseudomonas syringae pv. syringae B728a

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0185 tyrosine recombinase XerC subunit 1.0 Psyr_2896 Excinuclease ABC subunit C 0.37 6
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0185 tyrosine recombinase XerC subunit 1.00 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas sp. RS175 0.85 PFR28_04378 Tyrosine recombinase XerC 0.86 PFR28_01411 UvrABC system protein C 0.24 54
Pseudomonas lactucae CFBP13502 0.85 GEMAOFIL_05657 Tyrosine recombinase XerC 0.88 GEMAOFIL_02233 UvrABC system protein C low > 93
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2171 Tyrosine recombinase XerC 0.88 Pf1N1B4_5618 Excinuclease ABC subunit C low > 87
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12725 recombinase XerC 0.89 AO356_00350 excinuclease ABC subunit C low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_4416 Tyrosine recombinase XerC 0.86 Pf6N2E2_2021 Excinuclease ABC subunit C 0.29 43
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_842 Tyrosine recombinase XerC 0.89 PfGW456L13_2886 Excinuclease ABC subunit C low > 87
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_09050 recombinase XerC 0.89 AO353_21835 excinuclease ABC subunit C 0.46 4
Pseudomonas sp. DMC3 0.83 GFF370 Tyrosine recombinase XerC 0.88 GFF3645 UvrABC system protein C low > 89
Pseudomonas simiae WCS417 0.81 PS417_27595 recombinase XerC 0.88 PS417_10725 excinuclease ABC subunit C low > 88
Pseudomonas fluorescens SBW25 0.81 PFLU_RS29280 tyrosine recombinase XerC 0.88 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS29280 tyrosine recombinase XerC 0.88 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas sp. SVBP6 0.80 COO64_RS01270 xerC tyrosine recombinase XerC 0.88 COO64_RS13930 uvrC excinuclease ABC subunit UvrC low > 93
Pseudomonas putida KT2440 0.75 PP_5230 Tyrosine recombinase XerC 0.86 PP_4098 UvrABC system protein C low > 96
Pseudomonas sp. BP01 0.75 JOY50_RS22610 xerC tyrosine recombinase XerC 0.86 JOY50_RS06865 uvrC excinuclease ABC subunit UvrC low > 84
Pseudomonas stutzeri RCH2 0.75 Psest_3767 tyrosine recombinase XerC 0.84 Psest_2259 excinuclease ABC, C subunit 0.29 15
Pseudomonas segetis P6 0.74 MPMX49_04536 Tyrosine recombinase XerC 0.84 MPMX49_02521 UvrABC system protein C — —
Pseudomonas sp. S08-1 0.74 OH686_13785 tyrosine recombinase XerC 0.82 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas aeruginosa PA14 0.72 IKLFDK_27050 tyrosine recombinase XerC 0.84 IKLFDK_12970 excinuclease ABC subunit UvrC low > 100
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS15025 tyrosine recombinase XerC 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.71 5
Pectobacterium carotovorum WPP14 0.47 HER17_RS01350 tyrosine recombinase XerC 0.50 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Marinobacter adhaerens HP15 0.47 HP15_250 site-specific tyrosine recombinase XerC 0.57 HP15_1568 excinuclease ABC subunit C low > 73
Escherichia coli BW25113 0.47 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.51 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) low > 76
Serratia liquefaciens MT49 0.47 IAI46_00725 tyrosine recombinase XerC 0.51 IAI46_09210 excinuclease ABC subunit UvrC 0.54 3
Escherichia coli ECOR38 0.47 HEPCGN_13125 xerC tyrosine recombinase XerC 0.51 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_04239 Tyrosine recombinase XerC 0.51 OHPLBJKB_01816 UvrABC system protein C low > 74
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS02315 tyrosine recombinase XerC 0.53 LRK53_RS09770 excinuclease ABC subunit UvrC low > 59
Escherichia fergusonii Becca 0.47 EFB2_04826 Tyrosine recombinase XerC 0.51 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli Nissle 1917 0.47 ECOLIN_RS21875 tyrosine recombinase XerC 0.51 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Escherichia coli ECOR27 0.47 NOLOHH_06550 xerC tyrosine recombinase XerC 0.51 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC 0.39 24
Methylophilus sp. DMC18 0.47 GFF1535 Tyrosine recombinase XerC 0.48 GFF496 UvrABC system protein C low > 43
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_15325 xerC tyrosine recombinase XerC 0.53 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 53
Pantoea sp. MT58 0.47 IAI47_18400 tyrosine recombinase XerC 0.51 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Erwinia amylovora T8 0.47 OLJFJH_06415 tyrosine recombinase XerC 0.49 OLJFJH_15790 excinuclease ABC subunit UvrC low > 58
Escherichia coli ECRC62 0.47 BNILDI_04985 xerC tyrosine recombinase XerC 0.51 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli BL21 0.46 ECD_03687 site-specific tyrosine recombinase 0.51 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 61
Erwinia tracheiphila SCR3 0.46 LU632_RS24135 xerC tyrosine recombinase XerC 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC — —
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_08780 xerC tyrosine recombinase XerC 0.50 IJEDHG_20740 uvrC excinuclease ABC subunit UvrC — —
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.49 B158DRAFT_1273 Excinuclease ABC subunit C low > 40
Escherichia coli ECRC98 0.46 JDDGAC_18045 xerC tyrosine recombinase XerC 0.51 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC100 0.46 OKFHMN_14420 xerC tyrosine recombinase XerC 0.51 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 79
Escherichia coli ECRC101 0.46 MCAODC_04925 xerC tyrosine recombinase XerC 0.51 MCAODC_19565 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC99 0.46 KEDOAH_13730 xerC tyrosine recombinase XerC 0.51 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13505_RS15380 tyrosine recombinase XerC 0.51 PagCFBP13505_RS04865 excinuclease ABC subunit UvrC — —
Rahnella sp. WP5 0.46 EX31_RS15165 tyrosine recombinase XerC 0.50 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Klebsiella pneumoniae MKP103 0.46 KDGMDA_09700 tyrosine recombinase XerC 0.52 KDGMDA_25595 excinuclease ABC subunit UvrC low > 95
Escherichia coli ECRC102 0.46 NIAGMN_12175 xerC tyrosine recombinase XerC 0.51 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Klebsiella michiganensis M5al 0.46 BWI76_RS01210 tyrosine recombinase XerC 0.52 BWI76_RS18330 excinuclease ABC subunit C low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF239 Tyrosine recombinase XerC 0.51 GFF1700 Excinuclease ABC subunit C — —
Dechlorosoma suillum PS 0.45 Dsui_0651 tyrosine recombinase XerC 0.49 Dsui_2470 excinuclease ABC, C subunit low > 51
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4480 tyrosine recombinase XerC 0.50 EX28DRAFT_0634 Excinuclease ABC subunit C — —
Lysobacter sp. OAE881 0.45 ABIE51_RS03035 tyrosine recombinase XerC 0.47 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.78 7
Rhodanobacter denitrificans MT42 0.45 LRK55_RS08300 tyrosine recombinase XerC 0.54 LRK55_RS00120 excinuclease ABC subunit UvrC low > 63
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.45 Xcc-8004.2477.1 Excinuclease ABC subunit C — —
Dickeya dadantii 3937 0.45 DDA3937_RS19890 tyrosine recombinase XerC 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS08535 tyrosine recombinase XerC 0.54 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Dickeya dianthicola ME23 0.44 DZA65_RS21090 tyrosine recombinase XerC 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.50 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) low > 60
Dickeya dianthicola 67-19 0.44 HGI48_RS20045 tyrosine recombinase XerC 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Shewanella amazonensis SB2B 0.44 Sama_3247 integrase/recombinase XerC (RefSeq) 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) low > 62
Enterobacter sp. TBS_079 0.43 MPMX20_04465 Tyrosine recombinase XerC 0.50 MPMX20_02838 UvrABC system protein C low > 85
Alteromonas macleodii MIT1002 0.42 MIT1002_00157 Tyrosine recombinase XerC 0.48 MIT1002_02153 Excinuclease ABC subunit C low > 70
Shewanella sp. ANA-3 0.41 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_00650 tyrosine recombinase XerC 0.51 CSW01_06140 excinuclease ABC subunit C low > 62
Shewanella oneidensis MR-1 0.41 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) low > 76
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS21475 recombinase XerC 0.45 HSERO_RS09690 excinuclease ABC subunit C 0.33 13
Ralstonia solanacearum PSI07 0.40 RPSI07_RS23690 tyrosine recombinase XerC 0.43 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS05065 tyrosine recombinase XerC 0.44 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.47 33
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS09675 tyrosine recombinase XerC 0.43 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS00615 recombinase XerC 0.43 RR42_RS14000 excinuclease ABC subunit C low > 128
Ralstonia solanacearum UW163 0.39 UW163_RS03905 tyrosine recombinase XerC 0.43 UW163_RS11990 excinuclease ABC subunit UvrC — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS13455 tyrosine recombinase XerC 0.42 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF547 Tyrosine recombinase XerC 0.41 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. SCN45 0.38 GFF4490 Site-specific tyrosine recombinase XerC 0.42 GFF2859 Excinuclease ABC subunit C low > 127
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1995 Tyrosine recombinase XerC 0.41 Ac3H11_373 Excinuclease ABC subunit C low > 79
Ralstonia solanacearum GMI1000 0.38 RS_RS00260 Tyrosine recombinase XerC 1 0.43 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Acinetobacter baumannii LAC-4 0.38 RR41_RS04465 tyrosine recombinase 0.48 RR41_RS17435 excinuclease ABC subunit UvrC — —
Acinetobacter radioresistens SK82 0.37 MPMX26_02230 Tyrosine recombinase XerC 0.48 MPMX26_00228 UvrABC system protein C — —
Variovorax sp. OAS795 0.36 ABID97_RS06150 tyrosine recombinase XerC 0.42 ABID97_RS10635 excinuclease ABC subunit UvrC low > 91
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17800 tyrosine-type recombinase/integrase 0.23 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Mycobacterium tuberculosis H37Rv 0.31 Rv1701 Probable integrase/recombinase 0.27 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Agrobacterium fabrum C58 0.29 Atu2628 site-specific recombinase 0.36 Atu1129 excinuclease ABC chain C — —
Rhodopseudomonas palustris CGA009 0.29 TX73_000945 tyrosine recombinase XerC 0.38 TX73_006010 excinuclease ABC subunit UvrC low > 86
Rhodospirillum rubrum S1H 0.29 Rru_A1220 Phage integrase (NCBI) 0.36 Rru_A2220 Excinuclease ABC, C subunit (NCBI) — —
Dinoroseobacter shibae DFL-12 0.28 Dshi_5002 xerC hypothetical protein (NCBI) 0.39 Dshi_0644 excinuclease ABC, C subunit (RefSeq) — —
Rhizobium sp. OAE497 0.28 ABIE40_RS17950 tyrosine recombinase XerC 0.34 ABIE40_RS06500 excinuclease ABC subunit UvrC — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS21485 tyrosine recombinase XerC 0.34 AMB_RS19240 UvrABC system protein C — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS03965 tyrosine recombinase XerC 0.36 AZOBR_RS08965 excinuclease ABC subunit C — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c05760 putative tyrosine recombinase XerC 0.38 PGA1_c02880 uvrABC system protein C 0.56 2
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS12210 tyrosine recombinase XerC 0.33 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Azospirillum sp. SherDot2 0.26 MPMX19_02110 Tyrosine recombinase XerC 0.35 MPMX19_01070 UvrABC system protein C — —
Sphingobium sp. HT1-2 0.26 GFF251 Site-specific tyrosine recombinase XerC 0.35 GFF3465 Excinuclease ABC subunit C low > 95
Caulobacter crescentus NA1000 0.26 CCNA_00349 integrase/recombinase, XerC-CodV family 0.31 CCNA_02975 excinuclease ABC subunit C 0.68 5
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_00349 integrase/recombinase, XerC-CodV family 0.31 CCNA_02975 excinuclease ABC subunit C low > 67
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_2764 Site-specific recombinase XerD 0.37 Ga0059261_3186 Excinuclease ABC subunit C low > 68
Fusobacterium nucleatum SB010 0.14 HUW76_06795 tyrosine-type recombinase/integrase 0.26 HUW76_06695 excinuclease ABC subunit UvrC low > 35
Methanococcus maripaludis JJ 0.13 MMJJ_RS03475 tyrosine-type recombinase/integrase 0.25 MMJJ_RS01240 excinuclease ABC subunit UvrC low > 28

Not shown: 7 genomes with orthologs for Psyr_0185 only; 14 genomes with orthologs for Psyr_2896 only