| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0025 | | shikimate dehydrogenase | 1.0 | Psyr_1984 | | 3-isopropylmalate dehydratase, small subunit | 0.66 | 15 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0025 | | shikimate dehydrogenase | 1.00 | Psyr_1984 | | 3-isopropylmalate dehydratase, small subunit | 0.57 | 49 |
| Pseudomonas simiae WCS417 | 0.83 | PS417_00125 | | shikimate dehydrogenase | 0.89 | PS417_18595 | | 3-isopropylmalate dehydratase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.83 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.92 | Pf1N1B4_14 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.82 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.92 | PfGW456L13_3947 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | 0.78 | 20 |
| Pseudomonas fluorescens FW300-N2E3 | 0.82 | AO353_10670 | | shikimate dehydrogenase | 0.92 | AO353_20625 | | 3-isopropylmalate dehydratase | 0.72 | 26 |
| Pseudomonas sp. RS175 | 0.81 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | 0.92 | PFR28_02823 | | 3-isopropylmalate dehydratase small subunit 1 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.81 | PFLU_RS00120 | | shikimate dehydrogenase | 0.89 | PFLU_RS20575 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas fluorescens SBW25 | 0.81 | PFLU_RS00120 | | shikimate dehydrogenase | 0.89 | PFLU_RS20575 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.81 | AO356_11315 | | shikimate dehydrogenase | 0.92 | AO356_21405 | | 3-isopropylmalate dehydratase | 0.46 | 56 |
| Pseudomonas fluorescens FW300-N2E2 | 0.81 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.91 | Pf6N2E2_64 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Pseudomonas putida KT2440 | 0.77 | PP_0074 | | shikimate 5-dehydrogenase | 0.91 | PP_1986 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas sp. S08-1 | 0.75 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | 0.85 | OH686_04475 | | 3-isopropylmalate dehydratase small subunit | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.73 | Psest_0029 | | shikimate 5-dehydrogenase | 0.84 | Psest_2590 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.58 | CSW01_00280 | | shikimate dehydrogenase | 0.54 | CSW01_12610 | | 3-isopropylmalate dehydratase small subunit | low | > 62 |
| Dechlorosoma suillum PS | 0.56 | Dsui_0443 | | shikimate 5-dehydrogenase | 0.72 | Dsui_3199 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS01990 | | shikimate 5-dehydrogenase | 0.72 | HSERO_RS16505 | | 3-isopropylmalate dehydratase small subunit | 0.77 | 8 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.50 | Shewana3_3758 | leuD | isopropylmalate isomerase small subunit (RefSeq) | 0.90 | 33 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_3750 | | shikimate dehydrogenase | 0.74 | HP15_1833 | | isopropylmalate isomerase small subunit | — | — |
| Shewanella loihica PV-4 | 0.51 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | 0.55 | Shew_3469 | | isopropylmalate isomerase small subunit (RefSeq) | 0.78 | 46 |
| Shewanella oneidensis MR-1 | 0.50 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.50 | SO4233 | leuD | 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) | 0.88 | 33 |
| Escherichia coli BL21 | 0.49 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.56 | ECD_00073 | | 3-isopropylmalate dehydratase small subunit | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.49 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | 0.56 | OHPLBJKB_03586 | | 3-isopropylmalate dehydratase small subunit | low | > 73 |
| Escherichia coli Nissle 1917 | 0.49 | ECOLIN_RS18840 | | shikimate dehydrogenase | 0.56 | ECOLIN_RS00385 | | 3-isopropylmalate dehydratase small subunit | 0.70 | 36 |
| Escherichia coli BW25113 | 0.49 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.56 | b0071 | leuD | isopropylmalate isomerase small subunit (NCBI) | 0.92 | 19 |
| Escherichia coli ECRC62 | 0.49 | BNILDI_02165 | aroE | shikimate dehydrogenase | 0.56 | BNILDI_08535 | leuD | 3-isopropylmalate dehydratase small subunit | 0.89 | 69 |
| Escherichia coli ECOR27 | 0.49 | NOLOHH_09355 | aroE | shikimate dehydrogenase | 0.56 | NOLOHH_03075 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 75 |
| Escherichia coli ECRC99 | 0.49 | KEDOAH_10585 | aroE | shikimate dehydrogenase | 0.57 | KEDOAH_17425 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC100 | 0.49 | OKFHMN_17565 | aroE | shikimate dehydrogenase | 0.57 | OKFHMN_10730 | leuD | 3-isopropylmalate dehydratase small subunit | 0.89 | 67 |
| Escherichia coli ECRC98 | 0.49 | JDDGAC_21185 | aroE | shikimate dehydrogenase | 0.57 | JDDGAC_14325 | leuD | 3-isopropylmalate dehydratase small subunit | 0.73 | 80 |
| Escherichia coli ECRC102 | 0.49 | NIAGMN_15325 | aroE | shikimate dehydrogenase | 0.57 | NIAGMN_08580 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS27130 | | shikimate dehydrogenase | 0.70 | QEN71_RS17615 | | 3-isopropylmalate dehydratase small subunit | 0.61 | 73 |
| Escherichia coli ECRC101 | 0.49 | MCAODC_08085 | aroE | shikimate dehydrogenase | 0.57 | MCAODC_01245 | leuD | 3-isopropylmalate dehydratase small subunit | 0.82 | 31 |
| Pantoea sp. MT58 | 0.49 | IAI47_02315 | | shikimate dehydrogenase | 0.56 | IAI47_16015 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Paraburkholderia graminis OAS925 | 0.48 | ABIE53_003560 | | shikimate dehydrogenase | 0.70 | ABIE53_004803 | | 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | 0.71 | H281DRAFT_06073 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Escherichia fergusonii Becca | 0.48 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | 0.56 | EFB2_03974 | | 3-isopropylmalate dehydratase small subunit | low | > 86 |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS13890 | | shikimate dehydrogenase | 0.73 | RS_RS09995 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Burkholderia phytofirmans PsJN | 0.48 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | 0.70 | BPHYT_RS33905 | | 3-isopropylmalate dehydratase small subunit | 0.55 | 82 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS11300 | | shikimate dehydrogenase | 0.72 | RPSI07_RS14700 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS07680 | | shikimate dehydrogenase | 0.72 | UW163_RS11110 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS05945 | | shikimate dehydrogenase | 0.72 | RALBFv3_RS02615 | | 3-isopropylmalate dehydratase small subunit | low | > 76 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_16385 | aroE | shikimate dehydrogenase | 0.56 | HEPCGN_08710 | leuD | 3-isopropylmalate dehydratase small subunit | 0.78 | 58 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS20315 | | shikimate dehydrogenase | 0.57 | DZA65_RS19215 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Shewanella amazonensis SB2B | 0.47 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | 0.49 | Sama_0338 | leuD | isopropylmalate isomerase small subunit (RefSeq) | 0.68 | 56 |
| Klebsiella michiganensis M5al | 0.47 | BWI76_RS25645 | | shikimate dehydrogenase | 0.57 | BWI76_RS04665 | | 3-isopropylmalate dehydratase small subunit | 0.80 | 8 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.56 | MPMX20_00766 | | 3-isopropylmalate dehydratase small subunit 1 | 0.82 | 54 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS01605 | | shikimate dehydrogenase | 0.73 | ABZR87_RS14535 | | 3-isopropylmalate dehydratase small subunit | 0.58 | 34 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.58 | GFF167 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS17645 | | shikimate dehydrogenase | 0.70 | RR42_RS24180 | | 3-isopropylmalate dehydratase | low | > 128 |
| Dickeya dianthicola 67-19 | 0.46 | HGI48_RS19190 | | shikimate dehydrogenase | 0.57 | HGI48_RS18070 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS19100 | | shikimate dehydrogenase | 0.57 | DDA3937_RS18130 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS02250 | | shikimate dehydrogenase | 0.55 | HER17_RS03070 | | 3-isopropylmalate dehydratase small subunit | 0.94 | 19 |
| Serratia liquefaciens MT49 | 0.46 | IAI46_23240 | | shikimate dehydrogenase | 0.57 | IAI46_03340 | | 3-isopropylmalate dehydratase small subunit | low | > 86 |
| Enterobacter asburiae PDN3 | 0.46 | EX28DRAFT_0046 | | shikimate dehydrogenase | 0.57 | EX28DRAFT_3667 | | 3-isopropylmalate dehydratase, small subunit | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.44 | LU632_RS22445 | aroE | shikimate dehydrogenase | 0.52 | LU632_RS02865 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 74 |
| Rahnella sp. WP5 | 0.44 | EX31_RS15950 | | shikimate dehydrogenase | 0.58 | EX31_RS03695 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.70 | GFF3361 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | 0.45 | 74 |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS11620 | | shikimate dehydrogenase | 0.71 | ABCV34_RS04285 | | 3-isopropylmalate dehydratase small subunit | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.67 | Ac3H11_1527 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | 0.86 | 22 |
| Variovorax sp. SCN45 | 0.37 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.70 | GFF3889 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | low | > 127 |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00029 | | Shikimate dehydrogenase | 0.48 | MIT1002_00946 | | 3-isopropylmalate dehydratase small subunit 1 | — | — |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | 0.72 | MPMX26_00346 | | 3-isopropylmalate dehydratase small subunit 1 | low | > 36 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.35 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.79 | Xcc-8004.1050.1 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | 0.88 | 12 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS14985 | | shikimate dehydrogenase | 0.39 | ABZR86_RS15955 | | 3-isopropylmalate dehydratase small subunit | 0.92 | 57 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS06300 | | shikimate dehydrogenase | 0.70 | ABID97_RS08460 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS08595 | | shikimate dehydrogenase | 0.46 | LRK54_RS07370 | | 3-isopropylmalate dehydratase small subunit | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS08360 | | shikimate dehydrogenase | 0.46 | LRK55_RS07100 | | 3-isopropylmalate dehydratase small subunit | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_15365 | aroE | shikimate dehydrogenase | 0.36 | OKGIIK_13590 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 52 |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS01815 | | shikimate dehydrogenase | 0.40 | ABIE51_RS17580 | | 3-isopropylmalate dehydratase small subunit | 0.72 | 13 |
| Kangiella aquimarina DSM 16071 | 0.27 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | 0.73 | B158DRAFT_1320 | | 3-isopropylmalate dehydratase, small subunit | low | > 40 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | 0.55 | Dshi_0083 | | 3-isopropylmalate dehydratase, small subunit (RefSeq) | — | — |
| Agrobacterium fabrum C58 | 0.23 | Atu0003 | | shikimate 5-dehydrogenase | 0.52 | Atu2790 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c35150 | | shikimate dehydrogenase AroE | 0.55 | PGA1_c29790 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Sinorhizobium meliloti 1021 | 0.22 | SMc02791 | | shikimate 5-dehydrogenase | 0.53 | SMc03795 | | isopropylmalate isomerase small subunit | — | — |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_022410 | | shikimate dehydrogenase | 0.53 | TX73_001215 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS01765 | | shikimate 5-dehydrogenase | 0.53 | AZOBR_RS14135 | | isopropylmalate isomerase | — | — |
| Rhodospirillum rubrum S1H | 0.19 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | 0.53 | Rru_A1190 | | 3-isopropylmalate dehydratase small subunit region (NCBI) | — | — |
| Caulobacter crescentus NA1000 | 0.19 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.47 | CCNA_00195 | | 3-isopropylmalate dehydratase small subunit | 0.92 | 13 |
| Bosea sp. OAE506 | 0.19 | ABIE41_RS04650 | | shikimate dehydrogenase | 0.51 | ABIE41_RS11640 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.19 | CCNA_00003 | | shikimate 5-dehydrogenase | 0.47 | CCNA_00195 | | 3-isopropylmalate dehydratase small subunit | low | > 67 |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS19250 | | shikimate dehydrogenase | 0.50 | ABIE40_RS19040 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | 0.56 | MPMX19_00606 | | 3-isopropylmalate dehydratase small subunit 1 | — | — |
| Magnetospirillum magneticum AMB-1 | 0.18 | AMB_RS23010 | | shikimate dehydrogenase | 0.55 | AMB_RS20565 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.16 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.40 | Ga0059261_4225 | | 3-isopropylmalate dehydratase, small subunit | 0.91 | 40 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS13660 | | shikimate dehydrogenase | 0.34 | A4249_RS10000 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.13 | CA265_RS19745 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.42 | CA265_RS15840 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.12 | ABZR88_RS20055 | | shikimate dehydrogenase | 0.39 | ABZR88_RS11600 | | 3-isopropylmalate dehydratase small subunit | — | — |
Not shown: 4 genomes with orthologs for Psyr_0025 only; 10 genomes with orthologs for Psyr_1984 only