Conservation of cofitness between Psyr_0025 and Psyr_1669 in Pseudomonas syringae pv. syringae B728a

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_1669 O-succinylhomoserine sulfhydrylase 0.70 5
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_1669 O-succinylhomoserine sulfhydrylase 0.57 51
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.93 PS417_18530 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 Pf1N1B4_4890 Cystathionine gamma-lyase (EC 4.4.1.1) low > 87
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.92 PfGW456L13_3934 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.80 8
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.93 AO353_20695 O-succinylhomoserine sulfhydrylase 0.77 8
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.92 PFR28_02810 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.93 PFLU_RS20510 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.93 PFLU_RS20510 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.92 AO356_21470 O-succinylhomoserine sulfhydrylase 0.49 45
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.91 Pf6N2E2_77 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.86 PP_2001 O-succinylhomoserine sulfhydrylase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.82 OH686_04415 O-succinylhomoserine sulfhydrylase low > 80
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.84 Psest_2578 O-succinylhomoserine sulfhydrylase — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_00280 shikimate dehydrogenase 0.29 CSW01_13550 O-succinylhomoserine (thiol)-lyase low > 62
Dechlorosoma suillum PS 0.56 Dsui_0443 shikimate 5-dehydrogenase 0.57 Dsui_3185 O-succinylhomoserine sulfhydrylase — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS01990 shikimate 5-dehydrogenase 0.31 HSERO_RS18310 O-acetylhomoserine aminocarboxypropyltransferase low > 78
Shewanella sp. ANA-3 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.40 Shewana3_2643 methionine gamma-lyase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.52 HP15_3750 shikimate dehydrogenase 0.61 HP15_1820 methionine gamma-lyase — —
Shewanella loihica PV-4 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.37 Shew_2491 methionine gamma-lyase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.40 SO1812 mdeA Methionine gamma-lyase (EC 4.4.1.11) (from data) low > 76
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.29 ECD_03825 cystathionine gamma-synthase, PLP-dependent low > 61
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.30 b3939 metB cystathionine gamma-synthase (NCBI) 0.85 56
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.30 OHPLBJKB_04111 Cystathionine gamma-synthase low > 73
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.30 ECOLIN_RS22725 cystathionine gamma-synthase 0.75 32
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.30 NOLOHH_05820 metB cystathionine gamma-synthase 0.84 51
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.30 BNILDI_05715 metB cystathionine gamma-synthase 0.92 34
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.30 JDDGAC_17300 metB cystathionine gamma-synthase 0.77 61
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS27130 shikimate dehydrogenase 0.53 QEN71_RS17685 O-succinylhomoserine sulfhydrylase low > 153
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.30 OKFHMN_13675 metB cystathionine gamma-synthase 0.96 18
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.30 KEDOAH_14485 metB cystathionine gamma-synthase — —
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.30 MCAODC_04175 metB cystathionine gamma-synthase 0.86 10
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.30 NIAGMN_11430 metB cystathionine gamma-synthase — —
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.29 IAI47_00880 cystathionine gamma-synthase — —
Paraburkholderia graminis OAS925 0.48 ABIE53_003560 shikimate dehydrogenase 0.54 ABIE53_004817 O-succinylhomoserine sulfhydrylase — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.54 H281DRAFT_06059 O-succinylhomoserine sulfhydrylase — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS16975 shikimate 5-dehydrogenase 0.53 BPHYT_RS33835 O-succinylhomoserine sulfhydrylase 0.74 12
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.30 EFB2_04679 Cystathionine gamma-synthase low > 86
Ralstonia solanacearum GMI1000 0.48 RS_RS13890 shikimate dehydrogenase 0.35 RS_RS07865 O-acetylhomoserine aminocarboxypropyltransferase low > 80
Ralstonia solanacearum PSI07 0.48 RPSI07_RS11300 shikimate dehydrogenase 0.35 RPSI07_RS15620 O-acetylhomoserine aminocarboxypropyltransferase low > 81
Ralstonia solanacearum UW163 0.48 UW163_RS07680 shikimate dehydrogenase 0.35 UW163_RS15180 O-acetylhomoserine aminocarboxypropyltransferase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05945 shikimate dehydrogenase 0.35 RALBFv3_RS01870 O-acetylhomoserine aminocarboxypropyltransferase low > 76
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.29 HEPCGN_12345 metB cystathionine gamma-synthase 0.82 28
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.32 DZA65_RS16970 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase — —
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.31 BWI76_RS24210 cystathionine gamma-lyase low > 92
Shewanella amazonensis SB2B 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) 0.37 Sama_1242 methionine gamma-lyase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.30 MPMX20_04531 Cystathionine gamma-synthase 0.87 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.30 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) low > 78
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01605 shikimate dehydrogenase 0.36 ABZR87_RS13810 O-acetylhomoserine aminocarboxypropyltransferase low > 80
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.32 HGI48_RS15890 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17645 shikimate dehydrogenase 0.54 RR42_RS14320 O-succinylhomoserine sulfhydrylase 0.82 14
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.30 DDA3937_RS00950 cystathionine gamma-synthase — —
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.29 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) low > 76
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.40 IAI46_03630 methionine gamma-lyase low > 86
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.32 HER17_RS07405 PLP-dependent aspartate aminotransferase family protein low > 75
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.29 LU632_RS19640 metB cystathionine gamma-synthase 0.61 9
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.36 EX31_RS04985 PLP-dependent transferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.52 GFF301 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.53 41
Castellaniella sp019104865 MT123 0.40 ABCV34_RS11620 shikimate dehydrogenase 0.35 ABCV34_RS10165 bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase low > 48
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.33 Ac3H11_34 Methionine gamma-lyase (EC 4.4.1.11) low > 79
Variovorax sp. SCN45 0.37 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.53 GFF3088 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.25 MIT1002_02266 Methionine gamma-lyase — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.66 MPMX26_01645 O-succinylhomoserine sulfhydrylase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.37 Xcc-8004.4517.1 Cystathionine gamma-lyase (EC 4.4.1.1) low > 74
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS14985 shikimate dehydrogenase 0.38 ABZR86_RS18745 PLP-dependent aspartate aminotransferase family protein — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.54 ABID97_RS21630 O-succinylhomoserine sulfhydrylase — —
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.36 LRK55_RS05410 cystathionine gamma-synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.36 LRK54_RS05660 PLP-dependent aspartate aminotransferase family protein low > 59
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.37 OKGIIK_01180 metC cystathionine beta-lyase 0.67 11
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.39 ABIE51_RS04295 cystathionine gamma-synthase low > 62
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0259 shikimate 5-dehydrogenase 0.40 B158DRAFT_1522 methionine gamma-lyase low > 40
Dinoroseobacter shibae DFL-12 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.46 Dshi_2410 O-succinylhomoserine sulfhydrylase (RefSeq) — —
Agrobacterium fabrum C58 0.23 Atu0003 shikimate 5-dehydrogenase 0.43 Atu0432 O-succinylhomoserine sulfhydrylase — —
Sinorhizobium meliloti 1021 0.22 SMc02791 shikimate 5-dehydrogenase 0.41 SMc02217 O-succinylhomoserine sulfhydrylase — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c35150 shikimate dehydrogenase AroE 0.43 PGA1_c23540 O-succinylhomoserine sulfhydrylase MetZ — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.43 TX73_024775 O-succinylhomoserine sulfhydrylase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS01765 shikimate 5-dehydrogenase 0.42 AZOBR_RS02140 O-succinylhomoserine sulfhydrylase — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.43 Rru_A3214 O-succinylhomoserine sulfhydrylase (NCBI) — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.42 CCNA_02321 O-succinylhomoserine sulfhydrylase 0.87 41
Bosea sp. OAE506 0.19 ABIE41_RS04650 shikimate dehydrogenase 0.43 ABIE41_RS03970 O-succinylhomoserine sulfhydrylase — —
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.42 CCNA_02321 O-succinylhomoserine sulfhydrylase low > 67
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.41 ABIE40_RS02340 O-succinylhomoserine sulfhydrylase — —
Azospirillum sp. SherDot2 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.40 MPMX19_01364 O-succinylhomoserine sulfhydrylase — —
Magnetospirillum magneticum AMB-1 0.18 AMB_RS23010 shikimate dehydrogenase 0.47 AMB_RS21365 O-succinylhomoserine sulfhydrylase — —
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.42 Ga0059261_3194 O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) 0.81 61
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.36 A4249_RS08315 cystathionine gamma-synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.47 CA265_RS13080 O-succinylhomoserine sulfhydrylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.32 ABZR88_RS06685 cystathionine gamma-synthase — —

Not shown: 4 genomes with orthologs for Psyr_0025 only; 12 genomes with orthologs for Psyr_1669 only