Conservation of cofitness between Pf6N2E2_5594 and Pf6N2E2_4353 in Pseudomonas fluorescens FW300-N2E2

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 1.0 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.33 9
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_18345 endonuclease III 0.99 AO356_12385 LysR family transcriptional regulator 0.25 29
Pseudomonas sp. RS175 0.98 PFR28_03349 Endonuclease III 0.95 PFR28_04434 Hydrogen peroxide-inducible genes activator low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.94 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.45 3
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.93 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.42 6
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_04085 endonuclease III 0.93 AO353_09315 LysR family transcriptional regulator 0.41 3
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS05740 endonuclease III 0.94 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS05740 endonuclease III 0.94 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas simiae WCS417 0.95 PS417_05655 endonuclease III 0.93 PS417_27865 LysR family transcriptional regulator low > 88
Pseudomonas putida KT2440 0.93 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.93 PP_5309 oxidative and nitrosative stress transcriptional dual regulator low > 96
Pseudomonas sp. S08-1 0.92 OH686_03910 endonuclease III 0.86 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.96 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.96 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas stutzeri RCH2 0.89 Psest_3118 endonuclease III 0.90 Psest_4191 Transcriptional regulator low > 67
Marinobacter adhaerens HP15 0.81 HP15_1285 endonuclease III 0.65 HP15_308 oxidative stress regulatory protein OxyR 0.54 2
Kangiella aquimarina DSM 16071 0.80 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.54 B158DRAFT_0567 Transcriptional regulator low > 40
Escherichia coli ECRC101 0.75 MCAODC_17885 nth endonuclease III 0.36 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR low > 87
Escherichia coli ECRC98 0.75 JDDGAC_02115 nth endonuclease III 0.36 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR low > 86
Escherichia coli ECRC100 0.75 OKFHMN_27525 nth endonuclease III 0.36 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR low > 80
Escherichia coli ECRC102 0.75 NIAGMN_00540 nth endonuclease III 0.36 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC99 0.75 KEDOAH_00580 nth endonuclease III 0.36 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC62 0.75 BNILDI_16835 nth endonuclease III 0.36 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_02093 Endonuclease III 0.36 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 73
Escherichia coli ECOR27 0.75 NOLOHH_18045 nth endonuclease III 0.36 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BW25113 0.75 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.36 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli ECOR38 0.75 HEPCGN_05910 nth endonuclease III 0.36 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR low > 87
Escherichia coli BL21 0.75 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.36 ECD_03846 oxidative and nitrosative stress transcriptional regulator — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09110 endonuclease III 0.36 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3641 Endonuclease III (EC 4.2.99.18) 0.35 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Escherichia fergusonii Becca 0.75 EFB2_02359 Endonuclease III 0.36 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Klebsiella michiganensis M5al 0.74 BWI76_RS16385 endonuclease III 0.35 BWI76_RS00865 DNA-binding transcriptional regulator OxyR — —
Pantoea sp. MT58 0.74 IAI47_10475 endonuclease III 0.34 IAI47_00930 DNA-binding transcriptional regulator OxyR low > 76
Pectobacterium carotovorum WPP14 0.74 HER17_RS10860 endonuclease III 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS08070 endonuclease IV 0.53 HSERO_RS18935 LysR family transcriptional regulator low > 78
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.36 EX28DRAFT_4424 Transcriptional regulator — —
Serratia liquefaciens MT49 0.74 IAI46_11455 endonuclease III 0.35 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 86
Erwinia tracheiphila SCR3 0.74 LU632_RS11305 nth endonuclease III 0.34 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR low > 74
Shewanella oneidensis MR-1 0.74 SO2514 nth endonuclease III (NCBI ptt file) 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_02005 Endonuclease III 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Shewanella amazonensis SB2B 0.73 Sama_1836 endonuclease III (RefSeq) 0.23 Sama_0860 LysR family transcriptional regulator (RefSeq) low > 62
Rahnella sp. WP5 0.73 EX31_RS06590 endonuclease III 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05145 endonuclease III 0.33 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Dickeya dianthicola ME23 0.72 DZA65_RS11025 endonuclease III 0.36 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Shewanella sp. ANA-3 0.72 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.72 MPMX26_02306 Endonuclease III 0.27 MPMX26_02334 Hydrogen peroxide-inducible genes activator low > 36
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS01850 endonuclease III 0.31 LRK54_RS04765 LysR substrate-binding domain-containing protein low > 59
Dickeya dianthicola 67-19 0.72 HGI48_RS10545 endonuclease III 0.36 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.45 69
Rhodanobacter denitrificans MT42 0.72 LRK55_RS01640 endonuclease III 0.31 LRK55_RS04545 LysR substrate-binding domain-containing protein low > 63
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.56 Dsui_0823 transcriptional regulator low > 51
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS05970 endonuclease III 0.50 RR42_RS17385 LysR family transcriptional regulator 0.35 96
Dickeya dadantii 3937 0.71 DDA3937_RS10545 endonuclease III 0.36 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS08185 endonuclease III 0.29 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR 0.49 7
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_04675 nth endonuclease III 0.33 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR low > 52
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.31 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator low > 74
Ralstonia solanacearum PSI07 0.70 RPSI07_RS19265 endonuclease III 0.52 RPSI07_RS11690 hydrogen peroxide-inducible genes activator low > 81
Shewanella loihica PV-4 0.70 Shew_2072 endonuclease III (RefSeq) 0.23 Shew_1035 LysR family transcriptional regulator (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS09915 endonuclease III 0.51 ABZR87_RS01255 LysR substrate-binding domain-containing protein low > 80
Ralstonia solanacearum GMI1000 0.70 RS_RS04975 endonuclease III 0.51 RS_RS13470 hydrogen peroxide-inducible genes activator low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS11660 endonuclease III 0.52 UW163_RS08020 hydrogen peroxide-inducible genes activator — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS14195 endonuclease III 0.52 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator low > 76
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS24560 endonuclease III 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein low > 153
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.51 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.52 H281DRAFT_04673 transcriptional regulator, LysR family low > 103
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.47 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.45 28
Variovorax sp. OAS795 0.67 ABID97_RS17315 endonuclease III 0.47 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91
Castellaniella sp019104865 MT123 0.67 ABCV34_RS08465 endonuclease III 0.54 ABCV34_RS03575 LysR substrate-binding domain-containing protein low > 48
Lysobacter sp. OAE881 0.67 ABIE51_RS07560 endonuclease III 0.31 ABIE51_RS05475 LysR substrate-binding domain-containing protein low > 62
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.52 BPHYT_RS03470 LysR family transcriptional regulator low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.43 GFF2803 Hydrogen peroxide-inducible genes activator low > 90
Azospirillum sp. SherDot2 0.63 MPMX19_02500 Endonuclease III 0.37 MPMX19_04930 Hydrogen peroxide-inducible genes activator low > 112
Azospirillum brasilense Sp245 0.62 AZOBR_RS01565 endonuclease III 0.37 AZOBR_RS31340 LysR family transcriptional regulator low > 97
Bosea sp. OAE506 0.59 ABIE41_RS03410 endonuclease III 0.28 ABIE41_RS01195 hydrogen peroxide-inducible genes activator low > 77
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.32 Ga0059261_0159 Transcriptional regulator low > 68
Magnetospirillum magneticum AMB-1 0.58 AMB_RS21105 endonuclease III 0.31 AMB_RS03045 hydrogen peroxide-inducible genes activator low > 64
Rhodospirillum rubrum S1H 0.58 Rru_A0153 Endonuclease III/Nth (NCBI) 0.32 Rru_A0334 Transcriptional Regulator, LysR family (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.57 Dshi_3023 endonuclease III (RefSeq) 0.28 Dshi_0727 transcriptional regulator, LysR family (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.30 PGA1_78p00040 hydrogen peroxide-inducible genes activator OxyR — —
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS15000 endonuclease III 0.24 A4249_RS12755 hydrogen peroxide-inducible genes activator low > 48
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.31 CCNA_03811 LysR-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.31 CCNA_03811 LysR-family transcriptional regulator — —
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS11275 endonuclease III 0.27 ABI39_RS06075 hydrogen peroxide-inducible genes activator low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_14955 endonuclease III 0.31 CA264_13765 DNA-binding transcriptional regulator OxyR 0.69 3
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1263 endonuclease III 0.30 Echvi_1045 Transcriptional regulator 0.42 13
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS05445 endonuclease III 0.28 HMPREF1181_RS02160 hydrogen peroxide-inducible genes activator low > 56
Bacteroides ovatus ATCC 8483 0.44 BACOVA_04414 endonuclease III 0.28 BACOVA_05567 LysR substrate binding domain protein low > 94
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS16725 endonuclease III 0.29 ABZR88_RS18535 hydrogen peroxide-inducible genes activator low > 71
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1671 endonuclease III (NCBI ptt file) 0.29 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS09755 endonuclease III 0.27 HMPREF1078_RS01140 hydrogen peroxide-inducible genes activator low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS00605 endonuclease III 0.29 CA265_RS19680 DNA-binding transcriptional regulator OxyR low > 88
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.24 MIT1002_01120 Morphology and auto-aggregation control protein low > 70

Not shown: 5 genomes with orthologs for Pf6N2E2_5594 only; 4 genomes with orthologs for Pf6N2E2_4353 only