Conservation of cofitness between PP_1215 and PP_5352 in Pseudomonas putida KT2440

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 1.0 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.41 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.86 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.86 Psyr_5065 ATP-dependent DNA helicase UvrD 0.59 1
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.86 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.88 AO353_10055 DNA helicase II 0.40 7
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.87 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC 0.87 AO356_11990 DNA helicase II — —
Pseudomonas sp. RS175 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.87 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.87 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.30 67
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.86 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.86 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas stutzeri RCH2 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.79 Psest_4098 Superfamily I DNA and RNA helicases — —
Pseudomonas sp. S08-1 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC 0.80 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 0.62 CSW01_01015 DNA helicase II low > 62
Shewanella loihica PV-4 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.60 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.59 2
Marinobacter adhaerens HP15 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.64 HP15_3403 UvrD/REP helicase — —
Shewanella sp. ANA-3 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.61 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.61 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.43 2
Shewanella amazonensis SB2B 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.60 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.61 MIT1002_00153 DNA helicase II — —
Dickeya dianthicola 67-19 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.62 HGI48_RS20035 DNA helicase II — —
Dickeya dianthicola ME23 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.63 DZA65_RS21080 DNA helicase II — —
Dickeya dadantii 3937 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.63 DDA3937_RS19880 DNA helicase II — —
Serratia liquefaciens MT49 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.63 IAI46_00735 DNA helicase II — —
Pantoea sp. MT58 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.61 IAI47_18390 DNA helicase II 0.31 11
Enterobacter sp. TBS_079 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.63 MPMX20_04463 DNA helicase II 0.31 33
Pectobacterium carotovorum WPP14 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.63 HER17_RS01360 DNA helicase II low > 75
Erwinia tracheiphila SCR3 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.61 LU632_RS24125 uvrD DNA helicase II — —
Rahnella sp. WP5 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.62 EX31_RS15175 DNA helicase II — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.63 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) — —
Klebsiella michiganensis M5al 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.63 BWI76_RS01220 DNA-dependent helicase II — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.63 OHPLBJKB_04237 DNA helicase II — —
Escherichia coli ECOR27 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 NOLOHH_06540 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.63 EFB2_04824 DNA helicase II — —
Escherichia coli ECRC99 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC62 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.63 ECOLIN_RS21885 DNA helicase II — —
Escherichia coli BL21 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease 0.63 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli BW25113 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.63 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.30 69
Escherichia coli ECRC102 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 HEPCGN_13115 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 OKFHMN_14410 uvrD DNA helicase II — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.63 GFF241 ATP-dependent DNA helicase UvrD/PcrA — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.61 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.81 5
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.44 QEN71_RS05110 3'-5' exonuclease — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.44 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02715 Holliday junction DNA helicase 0.44 RR42_RS15090 DNA helicase — —
Ralstonia solanacearum UW163 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.43 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.43 RALBFv3_RS03775 DNA-dependent helicase — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS02080 Holliday junction resolvase 0.45 HSERO_RS02160 DNA-dependent helicase — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.45 Dsui_1227 DNA/RNA helicase, superfamily I — —
Ralstonia solanacearum GMI1000 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.44 RS_RS11220 DNA-dependent helicase — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.43 RPSI07_RS13455 DNA-dependent helicase — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.43 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. OAS795 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.45 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Variovorax sp. SCN45 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.44 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.54 ABZR86_RS16965 DNA helicase II — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.43 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.54 OKGIIK_16775 DNA helicase — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.53 LRK54_RS06850 DNA helicase II — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.53 LRK55_RS06595 DNA helicase II — —
Bosea sp. OAE506 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.36 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.39 45
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC 0.32 CA264_07795 ATP-dependent DNA helicase — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein — —
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.20 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.53 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA — —
Rhodospirillum rubrum S1H 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.33 AMB_RS03725 DNA helicase II — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.34 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.31 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Fusobacterium nucleatum SB010 0.30 HUW76_02575 crossover junction endodeoxyribonuclease RuvC 0.31 HUW76_07175 UvrD-helicase domain-containing protein — —
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.31 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Lysobacter sp. OAE881 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.55 ABIE51_RS01985 DNA helicase II — —
Phocaeicola vulgatus CL09T03C04 0.29 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.31 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.59 21
Bacteroides ovatus ATCC 8483 0.29 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.32 BACOVA_02365 UvrD/REP helicase — —
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.32 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.32 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC 0.33 A4249_RS04960 UvrD-helicase domain-containing protein — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.33 PGA1_c09450 DNA helicase II UvrD — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.36 Ga0059261_0249 Superfamily I DNA and RNA helicases — —
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0798 ruvC Holliday junction resolvase 0.30 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family — —

Not shown: 8 genomes with orthologs for PP_1215 only; 6 genomes with orthologs for PP_5352 only