Conservation of cofitness between PP_1215 and PP_5309 in Pseudomonas putida KT2440

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 1.0 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.36 9
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.92 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.92 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.89 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.88 AO353_09315 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.93 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC 0.90 AO356_12385 LysR family transcriptional regulator — —
Pseudomonas sp. RS175 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.90 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.27 87
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.88 PfGW456L13_773 Hydrogen peroxide-inducible genes activator low > 87
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas simiae WCS417 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC 0.89 PS417_27865 LysR family transcriptional regulator — —
Pseudomonas stutzeri RCH2 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.87 Psest_4191 Transcriptional regulator — —
Pseudomonas sp. S08-1 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC 0.85 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 0.32 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Shewanella loihica PV-4 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.22 Shew_1035 LysR family transcriptional regulator (RefSeq) low > 60
Marinobacter adhaerens HP15 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.64 HP15_308 oxidative stress regulatory protein OxyR — —
Shewanella sp. ANA-3 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.23 Sama_0860 LysR family transcriptional regulator (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.25 MIT1002_01120 Morphology and auto-aggregation control protein — —
Dickeya dianthicola ME23 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.36 DZA65_RS21450 DNA-binding transcriptional regulator OxyR — —
Dickeya dianthicola 67-19 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.36 HGI48_RS20405 DNA-binding transcriptional regulator OxyR — —
Dickeya dadantii 3937 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.36 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR — —
Serratia liquefaciens MT49 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.34 IAI46_24475 DNA-binding transcriptional regulator OxyR — —
Pantoea sp. MT58 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.34 IAI47_00930 DNA-binding transcriptional regulator OxyR 0.27 36
Enterobacter sp. TBS_079 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator 0.30 51
Pectobacterium carotovorum WPP14 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR 0.48 40
Rahnella sp. WP5 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR — —
Acinetobacter radioresistens SK82 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.27 MPMX26_02334 Hydrogen peroxide-inducible genes activator — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.36 EX28DRAFT_4424 Transcriptional regulator — —
Erwinia tracheiphila SCR3 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.34 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECOR27 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC99 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC62 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia fergusonii Becca 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.36 EFB2_04651 Hydrogen peroxide-inducible genes activator — —
Escherichia coli ECRC101 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC101 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.36 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR — —
Escherichia coli BW25113 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.36 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.39 33
Escherichia coli ECRC102 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC98 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.36 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator — —
Escherichia coli ECOR38 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.36 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR — —
Klebsiella michiganensis M5al 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.35 BWI76_RS00865 DNA-binding transcriptional regulator OxyR — —
Escherichia coli BL21 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease 0.36 ECD_03846 oxidative and nitrosative stress transcriptional regulator — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.35 GFF2347 Hydrogen peroxide-inducible genes activator — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.51 H281DRAFT_04673 transcriptional regulator, LysR family — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.50 BPHYT_RS03470 LysR family transcriptional regulator — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.50 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.54 B158DRAFT_0567 Transcriptional regulator 0.70 13
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02715 Holliday junction DNA helicase 0.48 RR42_RS17385 LysR family transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.50 ABZR87_RS01255 LysR substrate-binding domain-containing protein low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.51 UW163_RS08020 hydrogen peroxide-inducible genes activator — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.51 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS02080 Holliday junction resolvase 0.52 HSERO_RS18935 LysR family transcriptional regulator — —
Ralstonia solanacearum GMI1000 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.51 RS_RS13470 hydrogen peroxide-inducible genes activator — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.55 Dsui_0823 transcriptional regulator — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.51 RPSI07_RS11690 hydrogen peroxide-inducible genes activator — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.47 Ac3H11_784 Hydrogen peroxide-inducible genes activator — —
Variovorax sp. OAS795 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.46 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91
Variovorax sp. SCN45 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.30 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.44 GFF2803 Hydrogen peroxide-inducible genes activator — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.32 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.30 LRK55_RS04545 LysR substrate-binding domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.30 LRK54_RS04765 LysR substrate-binding domain-containing protein — —
Bosea sp. OAE506 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.29 ABIE41_RS01195 hydrogen peroxide-inducible genes activator low > 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC 0.30 CA264_13765 DNA-binding transcriptional regulator OxyR — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.52 ABCV34_RS03575 LysR substrate-binding domain-containing protein — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.30 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator — —
Rhodospirillum rubrum S1H 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.32 Rru_A2782 Transcriptional Regulator, LysR family (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.31 AMB_RS03045 hydrogen peroxide-inducible genes activator — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.29 Dshi_0727 transcriptional regulator, LysR family (RefSeq) — —
Caulobacter crescentus NA1000 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.32 CCNA_03811 LysR-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.32 CCNA_03811 LysR-family transcriptional regulator — —
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.27 HMPREF1078_RS01140 hydrogen peroxide-inducible genes activator low > 61
Rhizobium sp. OAE497 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.24 ABIE40_RS15045 hydrogen peroxide-inducible genes activator low > 107
Agrobacterium fabrum C58 0.30 Atu3724 Holliday junction resolvase 0.29 Atu4641 LysR family transcriptional regulator — —
Sinorhizobium meliloti 1021 0.30 SMc03967 Holliday junction resolvase 0.30 SMc00818 hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) low > 103
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.27 ABI39_RS06075 hydrogen peroxide-inducible genes activator low > 72
Lysobacter sp. OAE881 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.30 ABIE51_RS05475 LysR substrate-binding domain-containing protein — —
Bacteroides ovatus ATCC 8483 0.29 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.28 BACOVA_05567 LysR substrate binding domain protein — —
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.27 HMPREF1181_RS02160 hydrogen peroxide-inducible genes activator low > 56
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC 0.24 A4249_RS12755 hydrogen peroxide-inducible genes activator — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.28 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.30 PGA1_78p00040 hydrogen peroxide-inducible genes activator OxyR — —
Rhodopseudomonas palustris CGA009 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.25 TX73_002235 LysR substrate-binding domain-containing protein — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.31 Ga0059261_0159 Transcriptional regulator — —

Not shown: 4 genomes with orthologs for PP_1215 only; 5 genomes with orthologs for PP_5309 only