Conservation of cofitness between PP_4002 and PP_5294 in Pseudomonas putida KT2440

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4002 DNA-dependent ATPase required for recombination 1.0 PP_5294 Ribonuclease PH 0.28 7
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_27640 recombination factor protein RarA 0.94 AO353_09260 ribonuclease PH low > 101
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.94 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas sp. RS175 0.92 PFR28_02606 Replication-associated recombination protein A 0.94 PFR28_04420 Ribonuclease PH low > 88
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_22185 recombination factor protein RarA 0.95 AO356_12500 ribonuclease PH low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.95 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.93 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3177 Recombination protein MgsA 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3177 Recombination protein MgsA 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas simiae WCS417 0.91 PS417_16480 recombination factor protein RarA 0.94 PS417_27810 ribonuclease PH 0.31 9
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18520 replication-associated recombination protein A 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18520 replication-associated recombination protein A 0.94 PFLU_RS29490 ribonuclease PH 0.18 49
Pseudomonas sp. S08-1 0.88 OH686_00270 Replication-associated recombination protein RarA 0.88 OH686_13570 ribonuclease PH low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.89 Psest_3813 ribonuclease PH low > 67
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.69 B158DRAFT_0588 ribonuclease PH low > 40
Marinobacter adhaerens HP15 0.64 HP15_1817 recombination factor protein RarA 0.69 HP15_300 ribonuclease PH low > 73
Rahnella sp. WP5 0.60 EX31_RS18515 replication-associated recombination protein A 0.66 EX31_RS14505 ribonuclease PH low > 89
Klebsiella michiganensis M5al 0.60 BWI76_RS09670 recombination factor protein RarA 0.65 BWI76_RS27390 ribonuclease PH low > 92
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.65 EX28DRAFT_3893 ribonuclease PH low > 76
Shewanella sp. ANA-3 0.59 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.65 Shewana3_3777 RNAse PH (RefSeq) low > 73
Serratia liquefaciens MT49 0.59 IAI46_08570 replication-associated recombination protein A 0.67 IAI46_24850 ribonuclease PH low > 86
Enterobacter sp. TBS_079 0.59 MPMX20_01554 Replication-associated recombination protein A 0.65 MPMX20_00092 Ribonuclease PH low > 85
Shewanella loihica PV-4 0.59 Shew_2022 recombination factor protein RarA (RefSeq) 0.65 Shew_3488 ribonuclease PH (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_05630 replication-associated recombination protein A 0.63 CSW01_01115 ribonuclease PH low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4896 FIG065221: Holliday junction DNA helicase 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) low > 78
Erwinia tracheiphila SCR3 0.59 LU632_RS09755 replication-associated recombination protein A 0.64 LU632_RS22020 rph ribonuclease PH low > 74
Shewanella oneidensis MR-1 0.59 SO2308 ATPase, AAA family (NCBI ptt file) 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) low > 76
Escherichia coli BL21 0.59 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.66 ECD_03500 ribonuclease PH low > 60
Escherichia fergusonii Becca 0.59 EFB2_03169 Replication-associated recombination protein A 0.66 EFB2_00170 Ribonuclease PH low > 86
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04355 recombination factor protein RarA 0.60 RR42_RS04890 ribonuclease PH low > 128
Escherichia coli ECOR27 0.59 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.66 NOLOHH_07470 rph ribonuclease PH 0.65 38
Escherichia coli ECRC98 0.59 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.66 JDDGAC_19215 rph ribonuclease PH — —
Escherichia coli ECRC101 0.59 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.66 OKFHMN_15590 rph ribonuclease PH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_02776 Replication-associated recombination protein A 0.66 OHPLBJKB_00059 Ribonuclease PH low > 73
Escherichia coli ECRC102 0.59 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.66 NIAGMN_13350 rph ribonuclease PH — —
Escherichia coli Nissle 1917 0.59 ECOLIN_RS04745 replication-associated recombination protein RarA 0.66 ECOLIN_RS20755 ribonuclease PH low > 52
Escherichia coli ECOR38 0.59 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.66 HEPCGN_14410 rph ribonuclease PH low > 85
Escherichia coli ECRC99 0.59 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.66 KEDOAH_12555 rph ribonuclease PH — —
Escherichia coli BW25113 0.59 b0892 ycaJ recombination protein (NCBI) 0.64 b3643 rph ribonuclease PH (NCBI) low > 76
Escherichia coli ECRC101 0.59 MCAODC_24950 rarA replication-associated recombination protein RarA 0.66 MCAODC_06100 rph ribonuclease PH — —
Escherichia coli ECRC62 0.59 BNILDI_20385 rarA replication-associated recombination protein RarA 0.66 BNILDI_04045 rph ribonuclease PH — —
Pantoea sp. MT58 0.59 IAI47_12900 replication-associated recombination protein A 0.65 IAI47_00595 ribonuclease PH low > 76
Dickeya dadantii 3937 0.58 DDA3937_RS09605 replication-associated recombination protein A 0.69 DDA3937_RS20540 ribonuclease PH low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS09930 replication-associated recombination protein A 0.68 DZA65_RS00730 ribonuclease PH low > 75
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS03415 replication-associated recombination protein A 0.64 QEN71_RS03645 ribonuclease PH low > 153
Dickeya dianthicola 67-19 0.58 HGI48_RS09620 replication-associated recombination protein A 0.68 HGI48_RS00675 ribonuclease PH low > 71
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS16030 replication-associated recombination protein A 0.61 ABZR87_RS15255 ribonuclease PH low > 80
Pectobacterium carotovorum WPP14 0.58 HER17_RS12345 replication-associated recombination protein A 0.65 HER17_RS20855 ribonuclease PH low > 75
Paraburkholderia graminis OAS925 0.58 ABIE53_001292 putative ATPase 0.63 ABIE53_003234 ribonuclease PH low > 113
Shewanella amazonensis SB2B 0.58 Sama_1774 recombination factor protein RarA (RefSeq) 0.66 Sama_0320 tRNA nucleotidyltransferase (RefSeq) low > 62
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13205 replication-associated recombination protein A 0.61 RPSI07_RS13840 ribonuclease PH — —
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS05100 ATPase AAA 0.64 BPHYT_RS15325 ribonuclease PH low > 109
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS04145 replication-associated recombination protein A 0.61 RALBFv3_RS03345 ribonuclease PH low > 76
Ralstonia solanacearum UW163 0.57 UW163_RS09525 replication-associated recombination protein A 0.61 UW163_RS10375 ribonuclease PH — —
Dechlorosoma suillum PS 0.56 Dsui_1694 AAA ATPase 0.63 Dsui_0494 ribonuclease PH low > 51
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_00180 Recombination protein MgsA 0.63 H281DRAFT_04008 RNAse PH low > 103
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS09515 ATPase AAA 0.64 HSERO_RS10655 ribonuclease PH low > 78
Ralstonia solanacearum GMI1000 0.56 RS_RS11735 replication-associated recombination protein A 0.61 RS_RS10830 ribonuclease PH — —
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07220 replication-associated recombination protein A 0.56 ABCV34_RS03515 ribonuclease PH low > 48
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) low > 74
Alteromonas macleodii MIT1002 0.54 MIT1002_02178 Replication-associated recombination protein A 0.67 MIT1002_04071 Ribonuclease PH low > 70
Variovorax sp. SCN45 0.54 GFF6034 Replication-associated recombination protein RarA 0.59 GFF2381 Ribonuclease PH (EC 2.7.7.56) low > 127
Variovorax sp. OAS795 0.54 ABID97_RS07835 replication-associated recombination protein A 0.59 ABID97_RS23640 ribonuclease PH low > 91
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.55 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) low > 79
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07580 rarA recombination factor protein RarA 0.60 OKGIIK_12150 rph ribonuclease PH — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS17320 replication-associated recombination protein A 0.60 LRK54_RS11745 ribonuclease PH low > 59
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS01825 replication-associated recombination protein A 0.63 ABZR86_RS11900 ribonuclease PH low > 74
Rhodanobacter denitrificans MT42 0.53 LRK55_RS17545 replication-associated recombination protein A 0.60 LRK55_RS11470 ribonuclease PH low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS11445 replication-associated recombination protein A 0.61 ABIE51_RS17285 ribonuclease PH low > 62
Azospirillum brasilense Sp245 0.48 AZOBR_RS06885 ATPase AAA 0.58 AZOBR_RS02205 ribonuclease PH low > 97
Phaeobacter inhibens DSM 17395 0.48 PGA1_c01930 replication-associated recombination protein A 0.53 PGA1_c35030 ribonuclease PH low > 62
Sinorhizobium meliloti 1021 0.47 SMc01279 recombination factor protein RarA 0.60 SMc01144 ribonuclease PH low > 103
Azospirillum sp. SherDot2 0.47 MPMX19_01528 Replication-associated recombination protein A 0.56 MPMX19_02576 Ribonuclease PH low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS07890 replication-associated recombination protein A 0.51 A4249_RS13125 ribonuclease PH low > 48
Agrobacterium fabrum C58 0.47 Atu1914 ATPase, AAA family protein 0.60 Atu0327 ribonuclease PH — —
Rhizobium sp. OAE497 0.47 ABIE40_RS08045 replication-associated recombination protein A 0.60 ABIE40_RS01640 ribonuclease PH low > 107
Magnetospirillum magneticum AMB-1 0.46 AMB_RS17620 replication-associated recombination protein A 0.54 AMB_RS22760 ribonuclease PH low > 64
Rhodopseudomonas palustris CGA009 0.46 TX73_016655 replication-associated recombination protein A 0.56 TX73_001710 ribonuclease PH low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF777 FIG065221: Holliday junction DNA helicase 0.61 GFF3254 Ribonuclease PH (EC 2.7.7.56) low > 90
Dinoroseobacter shibae DFL-12 0.45 Dshi_0313 AAA ATPase central domain protein (RefSeq) 0.54 Dshi_3463 ribonuclease PH (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.45 Rru_A2660 AAA ATPase, central region (NCBI) 0.58 Rru_A3641 Ribonuclease PH (NCBI) low > 58
Caulobacter crescentus NA1000 0.45 CCNA_01342 ATPase, AAA family 0.50 CCNA_00151 ribonuclease PH low > 66
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_01342 ATPase, AAA family 0.50 CCNA_00151 ribonuclease PH low > 67
Bosea sp. OAE506 0.44 ABIE41_RS14690 replication-associated recombination protein A 0.58 ABIE41_RS03295 ribonuclease PH low > 77
Acinetobacter radioresistens SK82 0.40 MPMX26_02987 Replication-associated recombination protein A 0.65 MPMX26_00040 Ribonuclease PH low > 36
Bifidobacterium breve UCC2003 0.36 BBR_RS17330 replication-associated recombination protein A 0.51 BBR_RS12405 ribonuclease PH 0.40 17
Mycobacterium tuberculosis H37Rv 0.35 Rv2559c Conserved hypothetical alanine leucine valine rich protein 0.51 Rv1340 Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) — —

Not shown: 13 genomes with orthologs for PP_4002 only; 2 genomes with orthologs for PP_5294 only