Conservation of cofitness between PP_1620 and PP_5294 in Pseudomonas putida KT2440

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1620 5'(3')-nucleotidase and polyphosphatase 1.0 PP_5294 Ribonuclease PH 0.22 8
Pseudomonas fluorescens SBW25 0.86 PFLU_RS06415 5'/3'-nucleotidase SurE 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS06415 5'/3'-nucleotidase SurE 0.94 PFLU_RS29490 ribonuclease PH 0.26 73
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_3112 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.94 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas sp. S08-1 0.86 OH686_18170 5'/3'-nucleotidase SurE 0.88 OH686_13570 ribonuclease PH low > 80
Pseudomonas simiae WCS417 0.86 PS417_06350 stationary phase survival protein SurE 0.94 PS417_27810 ribonuclease PH low > 88
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_16600 stationary phase survival protein SurE 0.94 AO353_09260 ribonuclease PH low > 101
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_4678 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.93 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.95 Psyr_0213 RNAse PH 0.38 30
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_05900 stationary phase survival protein SurE 0.95 AO356_12500 ribonuclease PH low > 104
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_3040 5-nucleotidase SurE (EC 3.1.3.5) 0.95 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.35 43
Pseudomonas sp. RS175 0.81 PFR28_00424 '5'-nucleotidase SurE' transl_table=11 0.94 PFR28_04420 Ribonuclease PH low > 88
Pseudomonas stutzeri RCH2 0.79 Psest_2810 5'/3'-nucleotidase SurE 0.89 Psest_3813 ribonuclease PH low > 67
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS14845 stationary phase survival protein SurE 0.64 HSERO_RS10655 ribonuclease PH low > 78
Shewanella loihica PV-4 0.51 Shew_1210 stationary-phase survival protein SurE (RefSeq) 0.65 Shew_3488 ribonuclease PH (RefSeq) 0.62 6
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_02820 5'-nucleotidase SurE 0.63 CSW01_01115 ribonuclease PH low > 62
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS06595 5'/3'-nucleotidase SurE 0.63 ABZR86_RS11900 ribonuclease PH low > 74
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_08115 surE 5'/3'-nucleotidase SurE 0.60 OKGIIK_12150 rph ribonuclease PH — —
Shewanella amazonensis SB2B 0.50 Sama_1041 surE stationary phase survival protein SurE (RefSeq) 0.66 Sama_0320 tRNA nucleotidyltransferase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.50 HP15_1279 stationary-phase survival protein SurE 0.69 HP15_300 ribonuclease PH — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS16650 5'/3'-nucleotidase SurE 0.60 LRK54_RS11745 ribonuclease PH low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS16375 5'/3'-nucleotidase SurE 0.60 LRK55_RS11470 ribonuclease PH low > 63
Shewanella sp. ANA-3 0.50 Shewana3_1121 surE stationary phase survival protein SurE (RefSeq) 0.65 Shewana3_3777 RNAse PH (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO3435 surE stationary-phase survival protein SurE (NCBI ptt file) 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2296 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.69 B158DRAFT_0588 ribonuclease PH low > 40
Dechlorosoma suillum PS 0.48 Dsui_1968 5''/3''-nucleotidase SurE 0.63 Dsui_0494 ribonuclease PH low > 51
Rahnella sp. WP5 0.48 EX31_RS07840 5'/3'-nucleotidase SurE 0.66 EX31_RS14505 ribonuclease PH low > 89
Serratia liquefaciens MT49 0.48 IAI46_03775 5'/3'-nucleotidase SurE 0.67 IAI46_24850 ribonuclease PH low > 86
Klebsiella michiganensis M5al 0.47 BWI76_RS22660 5'/3'-nucleotidase SurE 0.65 BWI76_RS27390 ribonuclease PH 0.29 10
Lysobacter sp. OAE881 0.47 ABIE51_RS06485 5'/3'-nucleotidase SurE 0.61 ABIE51_RS17285 ribonuclease PH 0.51 58
Ralstonia solanacearum GMI1000 0.47 RS_RS06030 5'-nucleotidase SurE 0.61 RS_RS10830 ribonuclease PH — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS09100 stationary phase survival protein SurE 0.64 BPHYT_RS15325 ribonuclease PH low > 109
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS10860 5'/3'-nucleotidase SurE 0.61 ABZR87_RS15255 ribonuclease PH — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS22255 5'/3'-nucleotidase SurE 0.64 QEN71_RS03645 ribonuclease PH low > 153
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_00840 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase 0.63 H281DRAFT_04008 RNAse PH low > 103
Paraburkholderia graminis OAS925 0.47 ABIE53_002054 5'-nucleotidase 0.63 ABIE53_003234 ribonuclease PH low > 113
Ralstonia solanacearum PSI07 0.47 RPSI07_RS18155 5'/3'-nucleotidase SurE 0.61 RPSI07_RS13840 ribonuclease PH — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS15220 5'/3'-nucleotidase SurE 0.61 RALBFv3_RS03345 ribonuclease PH low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS12685 5'/3'-nucleotidase SurE 0.61 UW163_RS10375 ribonuclease PH — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.3131.1 hypothetical protein 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) low > 74
Enterobacter sp. TBS_079 0.46 MPMX20_03630 5'/3'-nucleotidase SurE 0.65 MPMX20_00092 Ribonuclease PH low > 85
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS13200 stationary phase survival protein SurE 0.60 RR42_RS04890 ribonuclease PH low > 128
Escherichia coli ECRC99 0.46 KEDOAH_07660 surE 5'/3'-nucleotidase SurE 0.66 KEDOAH_12555 rph ribonuclease PH — —
Escherichia coli BL21 0.46 ECD_02594 broad specificity 5'(3')-nucleotidase and polyphosphatase 0.66 ECD_03500 ribonuclease PH low > 60
Escherichia coli ECRC62 0.46 BNILDI_10845 surE 5'/3'-nucleotidase SurE 0.66 BNILDI_04045 rph ribonuclease PH — —
Escherichia coli ECRC98 0.46 JDDGAC_24145 surE 5'/3'-nucleotidase SurE 0.66 JDDGAC_19215 rph ribonuclease PH — —
Escherichia coli ECRC102 0.46 NIAGMN_18250 surE 5'/3'-nucleotidase SurE 0.66 NIAGMN_13350 rph ribonuclease PH — —
Escherichia coli Nissle 1917 0.46 ECOLIN_RS15345 5'/3'-nucleotidase SurE 0.66 ECOLIN_RS20755 ribonuclease PH 0.57 43
Escherichia coli BW25113 0.46 b2744 surE acid phosphatase (NCBI) 0.64 b3643 rph ribonuclease PH (NCBI) low > 76
Escherichia coli ECOR27 0.46 NOLOHH_12295 surE 5'/3'-nucleotidase SurE 0.66 NOLOHH_07470 rph ribonuclease PH low > 57
Escherichia fergusonii Becca 0.46 EFB2_01166 5'/3'-nucleotidase SurE 0.66 EFB2_00170 Ribonuclease PH low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_00989 '5'/3'-nucleotidase SurE' transl_table=11 0.66 OHPLBJKB_00059 Ribonuclease PH low > 73
Escherichia coli ECRC101 0.46 OKFHMN_20480 surE 5'/3'-nucleotidase SurE 0.66 OKFHMN_15590 rph ribonuclease PH — —
Escherichia coli ECRC101 0.46 MCAODC_11005 surE 5'/3'-nucleotidase SurE 0.66 MCAODC_06100 rph ribonuclease PH — —
Escherichia coli ECOR38 0.46 HEPCGN_19660 surE 5'/3'-nucleotidase SurE 0.66 HEPCGN_14410 rph ribonuclease PH low > 85
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2840 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.65 EX28DRAFT_3893 ribonuclease PH low > 76
Variovorax sp. OAS795 0.45 ABID97_RS10715 5'/3'-nucleotidase SurE 0.59 ABID97_RS23640 ribonuclease PH low > 91
Erwinia tracheiphila SCR3 0.45 LU632_RS06465 surE 5'/3'-nucleotidase SurE 0.64 LU632_RS22020 rph ribonuclease PH low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF3879 5-nucleotidase SurE (EC 3.1.3.5) 0.61 GFF3254 Ribonuclease PH (EC 2.7.7.56) low > 90
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF4792 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) low > 78
Variovorax sp. SCN45 0.45 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.59 GFF2381 Ribonuclease PH (EC 2.7.7.56) low > 127
Pantoea sp. MT58 0.45 IAI47_04220 5'/3'-nucleotidase SurE 0.65 IAI47_00595 ribonuclease PH low > 76
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1784 5-nucleotidase SurE (EC 3.1.3.5) 0.55 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) low > 79
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03030 5'/3'-nucleotidase SurE 0.56 ABCV34_RS03515 ribonuclease PH low > 48
Acinetobacter radioresistens SK82 0.42 MPMX26_01054 5'-nucleotidase SurE 0.65 MPMX26_00040 Ribonuclease PH low > 36
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_2063 surE stationary phase survival protein SurE 0.49 Synpcc7942_1073 rph ribonuclease PH low > 38
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12675 5'-nucleotidase SurE 0.54 AMB_RS22760 ribonuclease PH — —
Azospirillum brasilense Sp245 0.32 AZOBR_RS15460 5'-nucleotidase 0.58 AZOBR_RS02205 ribonuclease PH low > 97
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.50 CCNA_00151 ribonuclease PH low > 67
Caulobacter crescentus NA1000 0.31 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.50 CCNA_00151 ribonuclease PH low > 66
Azospirillum sp. SherDot2 0.31 MPMX19_01169 5'-nucleotidase SurE 0.56 MPMX19_02576 Ribonuclease PH 0.30 48
Agrobacterium fabrum C58 0.31 Atu1702 stationary-phase survival protein 0.60 Atu0327 ribonuclease PH — —
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS04645 5'/3'-nucleotidase SurE 0.51 A4249_RS13125 ribonuclease PH low > 48
Rhodospirillum rubrum S1H 0.30 Rru_A1769 Acid phosphatase (NCBI) 0.58 Rru_A3641 Ribonuclease PH (NCBI) — —
Rhizobium sp. OAE497 0.30 ABIE40_RS08480 5'/3'-nucleotidase SurE 0.60 ABIE40_RS01640 ribonuclease PH low > 107
Sinorhizobium meliloti 1021 0.30 SMc02063 stationary phase survival protein SurE 0.60 SMc01144 ribonuclease PH — —
Rhodopseudomonas palustris CGA009 0.29 TX73_014710 5'/3'-nucleotidase SurE 0.56 TX73_001710 ribonuclease PH low > 86
Bosea sp. OAE506 0.28 ABIE41_RS15015 5'/3'-nucleotidase SurE 0.58 ABIE41_RS03295 ribonuclease PH low > 77
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0278 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.49 Ga0059261_2741 ribonuclease PH — —
Phaeobacter inhibens DSM 17395 0.25 PGA1_c10770 5'-nucleotidase SurE 0.53 PGA1_c35030 ribonuclease PH low > 62
Dinoroseobacter shibae DFL-12 0.21 Dshi_2136 stationary-phase survival protein SurE (RefSeq) 0.54 Dshi_3463 ribonuclease PH (RefSeq) low > 64

Not shown: 14 genomes with orthologs for PP_1620 only; 7 genomes with orthologs for PP_5294 only