Conservation of cofitness between PP_0832 and PP_5294 in Pseudomonas putida KT2440

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_5294 Ribonuclease PH 0.39 13
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.94 AO353_09260 ribonuclease PH low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.95 Psyr_0213 RNAse PH low > 86
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.93 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.94 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.95 AO356_12500 ribonuclease PH 0.26 104
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.94 PFR28_04420 Ribonuclease PH 0.34 10
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.95 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.30 40
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.94 PS417_27810 ribonuclease PH low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.88 OH686_13570 ribonuclease PH low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.89 Psest_3813 ribonuclease PH low > 67
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 IAI46_24850 ribonuclease PH low > 86
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.65 Shew_3488 ribonuclease PH (RefSeq) — —
Rahnella sp. WP5 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 EX31_RS14505 ribonuclease PH low > 89
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 EX28DRAFT_3893 ribonuclease PH low > 76
Dickeya dianthicola ME23 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.68 DZA65_RS00730 ribonuclease PH low > 75
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.65 Shewana3_3777 RNAse PH (RefSeq) low > 73
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 BWI76_RS27390 ribonuclease PH low > 92
Dickeya dianthicola 67-19 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.68 HGI48_RS00675 ribonuclease PH low > 71
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.65 IAI47_00595 ribonuclease PH low > 76
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 JDDGAC_19215 rph ribonuclease PH — —
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 KEDOAH_12555 rph ribonuclease PH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.66 OHPLBJKB_00059 Ribonuclease PH low > 73
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 NIAGMN_13350 rph ribonuclease PH — —
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 OKFHMN_15590 rph ribonuclease PH — —
Dickeya dadantii 3937 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.69 DDA3937_RS20540 ribonuclease PH low > 74
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.64 b3643 rph ribonuclease PH (NCBI) low > 76
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 NOLOHH_07470 rph ribonuclease PH low > 57
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 MCAODC_06100 rph ribonuclease PH — —
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.66 ECD_03500 ribonuclease PH low > 60
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 BNILDI_04045 rph ribonuclease PH — —
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.66 EFB2_00170 Ribonuclease PH low > 86
Escherichia coli ECOR38 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 HEPCGN_14410 rph ribonuclease PH low > 85
Enterobacter sp. TBS_079 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 MPMX20_00092 Ribonuclease PH low > 85
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 ECOLIN_RS20755 ribonuclease PH — —
Erwinia tracheiphila SCR3 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.64 LU632_RS22020 rph ribonuclease PH low > 74
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.65 HER17_RS20855 ribonuclease PH low > 75
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.66 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.38 53
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.63 CSW01_01115 ribonuclease PH low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) low > 78
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.69 HP15_300 ribonuclease PH low > 73
Alteromonas macleodii MIT1002 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 MIT1002_04071 Ribonuclease PH low > 70
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.69 B158DRAFT_0588 ribonuclease PH low > 40
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.60 RR42_RS04890 ribonuclease PH 0.30 20
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 RS_RS10830 ribonuclease PH — —
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.64 HSERO_RS10655 ribonuclease PH low > 78
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.61 RPSI07_RS13840 ribonuclease PH — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 RALBFv3_RS03345 ribonuclease PH low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 UW163_RS10375 ribonuclease PH — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 ABZR87_RS15255 ribonuclease PH low > 80
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) low > 74
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 LRK54_RS11745 ribonuclease PH low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 LRK55_RS11470 ribonuclease PH low > 63
Acinetobacter radioresistens SK82 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 MPMX26_00040 Ribonuclease PH low > 36
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 ABCV34_RS03515 ribonuclease PH low > 48
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 OKGIIK_12150 rph ribonuclease PH — —
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 ABIE51_RS17285 ribonuclease PH low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.63 ABZR86_RS11900 ribonuclease PH low > 74
Variovorax sp. OAS795 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.59 ABID97_RS23640 ribonuclease PH low > 91
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.59 GFF2381 Ribonuclease PH (EC 2.7.7.56) low > 127
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.64 BPHYT_RS15325 ribonuclease PH low > 109
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.63 Dsui_0494 ribonuclease PH low > 51
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.55 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.28 71
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.64 QEN71_RS03645 ribonuclease PH low > 153
Paraburkholderia graminis OAS925 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.63 ABIE53_003234 ribonuclease PH low > 113
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.63 H281DRAFT_04008 RNAse PH low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.61 GFF3254 Ribonuclease PH (EC 2.7.7.56) low > 90
Azospirillum sp. SherDot2 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 MPMX19_02576 Ribonuclease PH low > 112
Azospirillum brasilense Sp245 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase 0.58 AZOBR_RS02205 ribonuclease PH 0.33 28
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.51 A4249_RS13125 ribonuclease PH low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) 0.58 Rru_A3641 Ribonuclease PH (NCBI) low > 58
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 ABIE40_RS01640 ribonuclease PH low > 107
Bosea sp. OAE506 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.58 ABIE41_RS03295 ribonuclease PH low > 77
Agrobacterium fabrum C58 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase 0.60 Atu0327 ribonuclease PH — —
Sinorhizobium meliloti 1021 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.60 SMc01144 ribonuclease PH low > 103
Dinoroseobacter shibae DFL-12 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) 0.54 Dshi_3463 ribonuclease PH (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.50 CCNA_00151 ribonuclease PH low > 67
Caulobacter crescentus NA1000 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.50 CCNA_00151 ribonuclease PH low > 66
Phaeobacter inhibens DSM 17395 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.53 PGA1_c35030 ribonuclease PH low > 62
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.49 Ga0059261_2741 ribonuclease PH — —
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.49 Synpcc7942_1073 rph ribonuclease PH low > 38
Magnetospirillum magneticum AMB-1 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.54 AMB_RS22760 ribonuclease PH low > 64
Rhodopseudomonas palustris CGA009 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 TX73_001710 ribonuclease PH low > 86

Not shown: 13 genomes with orthologs for PP_0832 only; 2 genomes with orthologs for PP_5294 only