Conservation of cofitness between PP_0872 and PP_4008 in Pseudomonas putida KT2440

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0872 Peptide chain release factor 3 1.0 PP_4008 ATP-dependent serine protease 0.36 16
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.93 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.93 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_05420 peptide chain release factor 3 0.94 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA low > 101
Pseudomonas simiae WCS417 0.95 PS417_04030 peptide chain release factor 3 0.94 PS417_16510 Clp protease ClpX — —
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_5060 Peptide chain release factor 3 0.94 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_07285 peptide chain release factor 3 0.94 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Pseudomonas sp. RS175 0.95 PFR28_00118 Peptide chain release factor RF3 0.95 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS04070 peptide chain release factor 3 0.93 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS04070 peptide chain release factor 3 0.93 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Pseudomonas stutzeri RCH2 0.94 Psest_3351 peptide chain release factor 3 0.92 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA low > 67
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3327 Peptide chain release factor 3 0.94 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Pseudomonas sp. S08-1 0.92 OH686_08765 peptide chain release factor 3 0.91 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_1130 Peptide chain release factor 3 0.94 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Acinetobacter radioresistens SK82 0.72 MPMX26_00476 Peptide chain release factor RF3 0.64 MPMX26_01284 ATP-dependent Clp protease ATP-binding subunit ClpA low > 36
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2239 peptide chain release factor 3 0.68 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.60 12
Pantoea sp. MT58 0.69 IAI47_03375 peptide chain release factor 3 0.67 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA low > 76
Marinobacter adhaerens HP15 0.69 HP15_541 peptide chain release factor 3 0.79 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 64
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_03470 peptide chain release factor 3 0.67 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA low > 62
Shewanella loihica PV-4 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.68 Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 60
Erwinia tracheiphila SCR3 0.69 LU632_RS02475 prfC peptide chain release factor 3 0.64 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.78 47
Enterobacter sp. TBS_079 0.68 MPMX20_00673 Peptide chain release factor RF3 0.67 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS04100 peptide chain release factor 3 0.67 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA low > 92
Shewanella amazonensis SB2B 0.68 Sama_0968 prfC peptide chain release factor 3 (RefSeq) 0.70 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.68 MIT1002_01192 Peptide chain release factor 3 0.67 MIT1002_01834 ATP-dependent Clp protease ATP-binding subunit ClpA 0.89 1
Shewanella sp. ANA-3 0.68 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) 0.70 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 73
Serratia liquefaciens MT49 0.68 IAI46_02875 peptide chain release factor 3 0.66 IAI46_08515 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Enterobacter asburiae PDN3 0.68 EX28DRAFT_3583 peptide chain release factor 3 0.67 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 76
Dickeya dianthicola ME23 0.68 DZA65_RS02505 peptide chain release factor 3 0.66 DZA65_RS09885 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Rahnella sp. WP5 0.68 EX31_RS04095 peptide chain release factor 3 0.66 EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF1035 Peptide chain release factor 3 0.67 GFF4901 ATP-dependent Clp protease ATP-binding subunit ClpA low > 78
Dickeya dianthicola 67-19 0.68 HGI48_RS02400 peptide chain release factor 3 0.66 HGI48_RS09575 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Dickeya dadantii 3937 0.68 DDA3937_RS02445 peptide chain release factor 3 0.67 DDA3937_RS09560 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Pectobacterium carotovorum WPP14 0.67 HER17_RS19065 peptide chain release factor 3 0.67 HER17_RS12400 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Escherichia coli ECOR27 0.67 NOLOHH_03600 prfC peptide chain release factor 3 0.67 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 57
Escherichia coli Nissle 1917 0.67 ECOLIN_RS25110 peptide chain release factor 3 0.67 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03687 Peptide chain release factor RF3 0.67 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA low > 73
Escherichia coli ECRC99 0.67 KEDOAH_16865 prfC peptide chain release factor 3 0.67 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC101 0.67 OKFHMN_11280 prfC peptide chain release factor 3 0.67 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECOR38 0.67 HEPCGN_09285 prfC peptide chain release factor 3 0.67 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 85
Escherichia coli ECRC102 0.67 NIAGMN_09130 prfC peptide chain release factor 3 0.67 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC101 0.67 MCAODC_01795 prfC peptide chain release factor 3 0.67 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli BL21 0.67 ECD_04250 peptide chain release factor RF-3 0.67 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity low > 60
Escherichia coli ECRC98 0.67 JDDGAC_14875 prfC peptide chain release factor 3 0.67 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli BW25113 0.67 b4375 prfC peptide chain release factor 3 (NCBI) 0.67 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) low > 76
Escherichia coli ECRC62 0.67 BNILDI_08000 prfC peptide chain release factor 3 0.67 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia fergusonii Becca 0.67 EFB2_04072 Peptide chain release factor RF3 0.67 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_01430 prfC peptide chain release factor 3 0.68 OKGIIK_06890 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS19000 peptide chain release factor 3 0.69 ABZR86_RS02200 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS05155 peptide chain release factor 3 0.67 LRK55_RS00160 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS14640 peptide chain release factor 3 0.64 HSERO_RS07030 ATP-dependent Clp protease ATP-binding protein — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS05380 peptide chain release factor 3 0.67 LRK54_RS00420 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Lysobacter sp. OAE881 0.63 ABIE51_RS16210 peptide chain release factor 3 0.67 ABIE51_RS11490 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 0.66 Xcc-8004.2754.1 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS37475 peptide chain release factor 3 0.64 RR42_RS17105 Clp protease ClpX low > 128
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS23485 peptide chain release factor 3 0.65 ABZR87_RS00435 ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Dechlorosoma suillum PS 0.61 Dsui_2418 peptide chain release factor 3 0.66 Dsui_0009 ATP-dependent Clp protease ATP-binding subunit clpA low > 51
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS23345 peptide chain release factor 3 0.64 RALBFv3_RS04810 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Ralstonia solanacearum UW163 0.60 UW163_RS16595 peptide chain release factor 3 0.64 UW163_RS08860 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Ralstonia solanacearum PSI07 0.60 RPSI07_RS07810 peptide chain release factor 3 0.64 RPSI07_RS12575 ATP-dependent Clp protease ATP-binding subunit ClpA low > 81
Ralstonia solanacearum GMI1000 0.60 RS_RS25080 peptide chain release factor 3 0.65 RS_RS12370 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Desulfovibrio vulgaris Hildenborough JW710 0.58 DVU3116 prfC peptide chain release factor 3 (TIGR) 0.52 DVU1602 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) 0.50 DvMF_0458 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 51
Castellaniella sp019104865 MT123 0.54 ABCV34_RS12505 peptide chain release factor 3 0.62 ABCV34_RS05305 ATP-dependent Clp protease ATP-binding subunit ClpA low > 48
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) 0.64 H281DRAFT_04082 ATP-dependent Clp protease ATP-binding subunit ClpA low > 103
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS34275 peptide chain release factor 3 0.64 BPHYT_RS15710 ATP-dependent Clp protease ATP-binding protein low > 109
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS17200 peptide chain release factor 3 0.64 QEN71_RS03005 ATP-dependent Clp protease ATP-binding subunit ClpA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF768 Peptide chain release factor 3 0.64 GFF4521 ATP-dependent Clp protease ATP-binding subunit ClpA low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3041 Peptide chain release factor 3 0.64 Ac3H11_2456 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Magnetospirillum magneticum AMB-1 0.51 AMB_RS01375 peptide chain release factor 3 0.62 AMB_RS05705 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Variovorax sp. SCN45 0.51 GFF2045 Peptide chain release factor 3 0.64 GFF341 ATP-dependent Clp protease ATP-binding subunit ClpA low > 127
Sinorhizobium meliloti 1021 0.50 SMc00427 peptide chain release factor RF-3 protein 0.58 SMc02109 ATP-dependent Clp protease ATP-binding subunit protein — —
Rhizobium sp. OAE497 0.50 ABIE40_RS01450 peptide chain release factor 3 0.60 ABIE40_RS08865 ATP-dependent Clp protease ATP-binding subunit ClpA low > 107
Azospirillum brasilense Sp245 0.49 AZOBR_RS14730 peptide chain release factor 3 0.62 AZOBR_RS05175 ATP-dependent Clp protease ATP-binding protein — —
Agrobacterium fabrum C58 0.48 Atu0315 peptide chain release factor 3 0.58 Atu1364 ATP-dependent Clp protease, ATP-binding subunit — —
Rhodospirillum rubrum S1H 0.48 Rru_A2497 Peptide chain release factor 3 (NCBI) 0.64 Rru_A2109 ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) 0.65 42
Azospirillum sp. SherDot2 0.48 MPMX19_01192 Peptide chain release factor 3 0.62 MPMX19_00503 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Bosea sp. OAE506 0.48 ABIE41_RS06180 peptide chain release factor 3 0.60 ABIE41_RS18235 ATP-dependent Clp protease ATP-binding subunit ClpA 0.52 49
Rhodopseudomonas palustris CGA009 0.47 TX73_011820 peptide chain release factor 3 0.60 TX73_016270 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS07935 peptide chain release factor 3 0.40 HMPREF1058_RS09040 AAA family ATPase — —
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS00385 peptide chain release factor 3 0.39 ABI39_RS03345 AAA family ATPase — —
Sphingomonas koreensis DSMZ 15582 0.45 Ga0059261_2044 peptide chain release factor 3 0.61 Ga0059261_1001 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 68
Phaeobacter inhibens DSM 17395 0.45 PGA1_c10620 peptide chain release factor 3 0.59 PGA1_c25150 ATP-dependent Clp protease ATP-binding subunit — —
Dinoroseobacter shibae DFL-12 0.44 Dshi_1336 peptide chain release factor 3 (RefSeq) 0.60 Dshi_2939 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.44 A4249_RS15275 peptide chain release factor 3 0.60 A4249_RS08390 ATP-dependent Clp protease ATP-binding subunit ClpA low > 48
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_01123 peptide chain release factor RF-3 0.60 CCNA_02553 ATP-dependent clp protease ATP-binding subunit ClpA low > 67
Caulobacter crescentus NA1000 0.43 CCNA_01123 peptide chain release factor RF-3 0.60 CCNA_02553 ATP-dependent clp protease ATP-binding subunit ClpA low > 66

Not shown: 8 genomes with orthologs for PP_0872 only; 2 genomes with orthologs for PP_4008 only