Conservation of cofitness between IAI46_01880 and IAI46_14265 in Serratia liquefaciens MT49

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_01880 transcription elongation factor GreA 1.0 IAI46_14265 formyltetrahydrofolate deformylase 0.55 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF2922 Transcription elongation factor GreA 0.88 GFF2756 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 78
Klebsiella michiganensis M5al 0.89 BWI76_RS25160 transcription elongation factor GreA 0.86 BWI76_RS17290 formyltetrahydrofolate deformylase low > 92
Rahnella sp. WP5 0.89 EX31_RS08595 transcription elongation factor GreA 0.94 EX31_RS10115 formyltetrahydrofolate deformylase 0.35 52
Escherichia coli ECRC101 0.88 OKFHMN_18045 greA transcription elongation factor GreA 0.89 OKFHMN_28570 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECOR27 0.88 NOLOHH_09845 greA transcription elongation factor GreA 0.89 NOLOHH_20480 purU formyltetrahydrofolate deformylase — —
Escherichia coli BW25113 0.88 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.89 b1232 purU formyltetrahydrofolate deformylase (NCBI) low > 76
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3232 transcription elongation factor GreA 0.87 EX28DRAFT_0858 formyltetrahydrofolate deformylase low > 76
Pectobacterium carotovorum WPP14 0.88 HER17_RS18330 transcription elongation factor GreA 0.94 HER17_RS11065 formyltetrahydrofolate deformylase — —
Escherichia fergusonii Becca 0.88 EFB2_00642 Transcription elongation factor GreA 0.89 EFB2_02694 Formyltetrahydrofolate deformylase low > 86
Escherichia coli ECRC99 0.88 KEDOAH_10105 greA transcription elongation factor GreA 0.89 KEDOAH_25565 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC101 0.88 MCAODC_08565 greA transcription elongation factor GreA 0.89 MCAODC_21690 purU formyltetrahydrofolate deformylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_00519 Transcription elongation factor GreA 0.89 OHPLBJKB_02453 Formyltetrahydrofolate deformylase low > 73
Escherichia coli ECRC62 0.88 BNILDI_01690 greA transcription elongation factor GreA 0.89 BNILDI_18635 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC102 0.88 NIAGMN_15805 greA transcription elongation factor GreA 0.89 NIAGMN_27665 purU formyltetrahydrofolate deformylase — —
Escherichia coli BL21 0.88 ECD_03046 transcript cleavage factor 0.89 ECD_01208 formyltetrahydrofolate hydrolase low > 60
Enterobacter sp. TBS_079 0.88 MPMX20_04085 Transcription elongation factor GreA 0.87 MPMX20_02596 Formyltetrahydrofolate deformylase low > 85
Escherichia coli Nissle 1917 0.88 ECOLIN_RS18320 transcription elongation factor GreA 0.89 ECOLIN_RS07460 formyltetrahydrofolate deformylase — —
Escherichia coli ECOR38 0.88 HEPCGN_16920 greA transcription elongation factor GreA 0.89 HEPCGN_25030 purU formyltetrahydrofolate deformylase — —
Escherichia coli ECRC98 0.88 JDDGAC_21670 greA transcription elongation factor GreA 0.89 JDDGAC_06005 purU formyltetrahydrofolate deformylase — —
Dickeya dadantii 3937 0.87 DDA3937_RS03015 transcription elongation factor GreA 0.93 DDA3937_RS10325 formyltetrahydrofolate deformylase — —
Pantoea sp. MT58 0.86 IAI47_17080 transcription elongation factor GreA 0.90 IAI47_09010 formyltetrahydrofolate deformylase low > 76
Dickeya dianthicola ME23 0.86 DZA65_RS03180 transcription elongation factor GreA 0.93 DZA65_RS10810 formyltetrahydrofolate deformylase low > 75
Dickeya dianthicola 67-19 0.86 HGI48_RS03185 transcription elongation factor GreA 0.93 HGI48_RS10335 formyltetrahydrofolate deformylase low > 71
Erwinia tracheiphila SCR3 0.79 LU632_RS21165 greA transcription elongation factor GreA 0.90 LU632_RS12940 purU formyltetrahydrofolate deformylase low > 74
Alteromonas macleodii MIT1002 0.74 MIT1002_01468 Transcript cleavage factor GreA 0.36 MIT1002_00404 Formyltetrahydrofolate deformylase low > 70
Shewanella oneidensis MR-1 0.72 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.67 SO1624 purU formyltetrahydrofolate deformylase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.72 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.70 Shewana3_2821 purU formyltetrahydrofolate deformylase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.70 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.67 Sama_1134 purU formyltetrahydrofolate deformylase (RefSeq) low > 62
Shewanella loihica PV-4 0.69 Shew_2837 transcription elongation factor GreA (RefSeq) 0.65 Shew_2640 purU formyltetrahydrofolate deformylase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.66 MPMX26_00765 Transcription elongation factor GreA 0.34 MPMX26_00378 Formyltetrahydrofolate deformylase low > 36
Pseudomonas stutzeri RCH2 0.61 Psest_0969 transcription elongation factor GreA 0.38 Psest_3178 formyltetrahydrofolate deformylase low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4190 transcription elongation factor GreA 0.38 Psyr_4018 Formyltetrahydrofolate deformylase — —
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4190 transcription elongation factor GreA 0.38 Psyr_4018 Formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_05625 transcription elongation factor GreA 0.39 AO353_03710 formyltetrahydrofolate deformylase low > 101
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_1171 Transcription elongation factor GreA 0.39 Pf1N1B4_665 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25875 transcription elongation factor GreA 0.39 PFLU_RS24200 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25875 transcription elongation factor GreA 0.39 PFLU_RS24200 formyltetrahydrofolate deformylase — —
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.2911.1 Transcription elongation factor GreA 0.38 Xcc-8004.395.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 74
Pseudomonas sp. S08-1 0.58 OH686_17085 Transcription elongation factor GreA 0.39 OH686_18295 formyltetrahydrofolate deformylase low > 80
Lysobacter sp. OAE881 0.58 ABIE51_RS11610 transcription elongation factor GreA 0.34 ABIE51_RS07700 formyltetrahydrofolate deformylase low > 62
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS04785 transcription elongation factor GreA 0.39 QEN71_RS33925 formyltetrahydrofolate deformylase low > 153
Caulobacter crescentus NA1000 0.58 CCNA_02941 transcription elongation factor greA 0.35 CCNA_03745 formyltetrahydrofolate deformylase low > 66
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_03330 transcription elongation factor GreA 0.73 CSW01_09940 formyltetrahydrofolate deformylase low > 62
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_02941 transcription elongation factor greA 0.35 CCNA_03745 formyltetrahydrofolate deformylase low > 67
Dechlorosoma suillum PS 0.58 Dsui_3063 transcription elongation factor GreA 0.40 Dsui_0762 formyltetrahydrofolate deformylase — —
Pseudomonas simiae WCS417 0.58 PS417_24035 transcription elongation factor GreA 0.39 PS417_22565 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3363 Transcription elongation factor GreA 0.39 Pf6N2E2_5508 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_5098 Transcription elongation factor GreA 0.38 PfGW456L13_1825 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_07475 transcription elongation factor GreA 0.39 AO356_17895 formyltetrahydrofolate deformylase — —
Paraburkholderia graminis OAS925 0.57 ABIE53_003003 transcription elongation factor GreA 0.38 ABIE53_000728 formyltetrahydrofolate deformylase low > 113
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS14185 transcription elongation factor GreA 0.38 BPHYT_RS02955 formyltetrahydrofolate deformylase 0.30 84
Ralstonia solanacearum PSI07 0.57 RPSI07_RS15260 transcription elongation factor GreA 0.35 RPSI07_RS15065 formyltetrahydrofolate deformylase low > 81
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS14135 transcription elongation factor GreA 0.35 ABZR87_RS14235 formyltetrahydrofolate deformylase low > 80
Pseudomonas sp. RS175 0.56 PFR28_00078 Transcription elongation factor GreA 0.39 PFR28_03439 Formyltetrahydrofolate deformylase — —
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04404 GreA/GreB family elongation factor 0.38 H281DRAFT_01917 formyltetrahydrofolate deformylase — —
Pseudomonas putida KT2440 0.56 PP_4722 Transcription elongation factor GreA 0.38 PP_1943 formyltetrahydrofolate deformylase low > 96
Dinoroseobacter shibae DFL-12 0.55 Dshi_3076 transcription elongation factor GreA (RefSeq) 0.34 Dshi_2111 formyltetrahydrofolate deformylase (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.55 Ac3H11_437 Transcription elongation factor GreA 0.36 Ac3H11_4485 Formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS02185 transcription elongation factor GreA 0.35 RALBFv3_RS02305 formyltetrahydrofolate deformylase low > 76
Castellaniella sp019104865 MT123 0.55 ABCV34_RS15540 transcription elongation factor GreA 0.35 ABCV34_RS06320 formyltetrahydrofolate deformylase low > 48
Ralstonia solanacearum UW163 0.55 UW163_RS15495 transcription elongation factor GreA 0.35 UW163_RS11420 formyltetrahydrofolate deformylase — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS13505 transcription elongation factor GreA 0.35 RR42_RS13800 formyltetrahydrofolate deformylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF4897 Transcription elongation factor GreA 0.35 GFF2737 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 90
Ralstonia solanacearum GMI1000 0.54 RS_RS07635 transcription elongation factor GreA 0.35 RS_RS09460 formyltetrahydrofolate deformylase — —
Azospirillum sp. SherDot2 0.54 MPMX19_02300 Transcription elongation factor GreA 0.37 MPMX19_04425 Formyltetrahydrofolate deformylase — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS06930 transcription elongation factor GreA 0.34 HSERO_RS07970 formyltetrahydrofolate deformylase — —
Variovorax sp. OAS795 0.52 ABID97_RS17070 transcription elongation factor GreA 0.35 ABID97_RS00100 formyltetrahydrofolate deformylase — —
Variovorax sp. SCN45 0.52 GFF374 Transcription elongation factor GreA 0.36 GFF3790 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 127
Rhodospirillum rubrum S1H 0.51 Rru_A2887 GreA/GreB family elongation factor (NCBI) 0.37 Rru_A0556 Formyltetrahydrofolate deformylase (NCBI) low > 58
Azospirillum brasilense Sp245 0.51 AZOBR_RS12900 transcription elongation factor GreA 0.38 AZOBR_RS21685 formyltetrahydrofolate deformylase — —
Magnetospirillum magneticum AMB-1 0.50 AMB_RS03610 transcription elongation factor GreA 0.36 AMB_RS18080 formyltetrahydrofolate deformylase low > 64
Agrobacterium fabrum C58 0.50 Atu2182 transcription elongation facto 0.37 Atu4315 formyltetrahydrofolate deformylase — —
Rhodopseudomonas palustris CGA009 0.49 TX73_021095 transcription elongation factor GreA 0.34 TX73_020890 formyltetrahydrofolate deformylase — —
Sinorhizobium meliloti 1021 0.49 SMc01218 transcription elongation factor GreA 0.38 SMc04154 formyltetrahydrofolate deformylase — —
Bosea sp. OAE506 0.48 ABIE41_RS11905 transcription elongation factor GreA 0.35 ABIE41_RS02615 formyltetrahydrofolate deformylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.43 DVU3245 greA transcription elongation factor GreA (TIGR) 0.39 DVU1540 purU formyltetrahydrofolate deformylase (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.43 DvMF_0383 greA transcription elongation factor GreA (RefSeq) 0.38 DvMF_0189 purU formyltetrahydrofolate deformylase (RefSeq) low > 51
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_0008 transcription elongation factor GreA 0.37 Ga0059261_1821 formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS04145 transcription elongation factor GreA 0.39 ABI39_RS19915 formyltetrahydrofolate deformylase low > 72
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS12565 transcription elongation factor GreA 0.39 HMPREF1058_RS06160 formyltetrahydrofolate deformylase — —
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS00805 transcription elongation factor GreA 0.38 HMPREF1181_RS11085 formyltetrahydrofolate deformylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS00130 transcription elongation factor GreA 0.48 ABZR88_RS14140 formyltetrahydrofolate deformylase low > 71
Bacteroides ovatus ATCC 8483 0.36 BACOVA_01643 prokaryotic transcription elongation factor, GreA/GreB domain protein 0.38 BACOVA_00222 formyltetrahydrofolate deformylase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.36 BT2565 transcription elongation factor greA (NCBI ptt file) 0.38 BT1381 formyltetrahydrofolate deformylase (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_0180 transcription elongation factor GreA 0.40 Echvi_1543 formyltetrahydrofolate deformylase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS23190 transcription elongation factor GreA 0.43 CA265_RS21155 formyltetrahydrofolate deformylase low > 88
Mycobacterium tuberculosis H37Rv 0.23 Rv1080c Probable transcription elongation factor GreA (transcript cleavage factor GreA) 0.32 Rv2964 Probable formyltetrahydrofolate deformylase PurU (formyl-FH(4) hydrolase) — —

Not shown: 10 genomes with orthologs for IAI46_01880 only; 2 genomes with orthologs for IAI46_14265 only