Conservation of cofitness between HSERO_RS08070 and HSERO_RS15630 in Herbaspirillum seropedicae SmR1

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08070 endonuclease IV 1.0 HSERO_RS15630 exodeoxyribonuclease III 0.40 2
Ralstonia solanacearum PSI07 0.76 RPSI07_RS19265 endonuclease III 0.63 RPSI07_RS15785 exodeoxyribonuclease III low > 81
Ralstonia solanacearum GMI1000 0.75 RS_RS04975 endonuclease III 0.63 RS_RS08025 exodeoxyribonuclease III low > 80
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS06080 endonuclease IV 0.65 BPHYT_RS12925 exodeoxyribonuclease III low > 109
Marinobacter adhaerens HP15 0.74 HP15_1285 endonuclease III 0.28 HP15_1776 exonuclease III low > 73
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS14195 endonuclease III 0.63 RALBFv3_RS01700 exodeoxyribonuclease III low > 76
Ralstonia solanacearum UW163 0.74 UW163_RS11660 endonuclease III 0.63 UW163_RS15010 exodeoxyribonuclease III — —
Paraburkholderia graminis OAS925 0.74 ABIE53_001423 endonuclease-3 0.65 ABIE53_002802 exodeoxyribonuclease-3 low > 113
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS09915 endonuclease III 0.64 ABZR87_RS13495 exodeoxyribonuclease III low > 80
Pseudomonas stutzeri RCH2 0.74 Psest_3118 endonuclease III 0.37 Psest_1187 exodeoxyribonuclease III low > 67
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.64 H281DRAFT_00456 Exodeoxyribonuclease III low > 103
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS05970 endonuclease III 0.67 RR42_RS07325 exodeoxyribonuclease III 0.57 7
Pseudomonas sp. S08-1 0.73 OH686_03910 endonuclease III 0.33 OH686_23775 exodeoxyribonuclease III low > 80
Pectobacterium carotovorum WPP14 0.73 HER17_RS10860 endonuclease III 0.30 HER17_RS11085 exodeoxyribonuclease III low > 75
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) low > 103
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS08185 endonuclease III 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.67 2
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_04085 endonuclease III 0.27 AO353_27875 exonuclease III 0.22 94
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.27 Psyr_2476 Exodeoxyribonuclease III low > 86
Rahnella sp. WP5 0.72 EX31_RS06590 endonuclease III 0.29 EX31_RS06330 exodeoxyribonuclease III low > 89
Escherichia coli Nissle 1917 0.72 ECOLIN_RS09110 endonuclease III 0.28 ECOLIN_RS09750 exodeoxyribonuclease III — —
Escherichia coli BW25113 0.72 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.29 b1749 xthA exonuclease III (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02093 Endonuclease III 0.29 OHPLBJKB_01983 Exodeoxyribonuclease III low > 73
Escherichia coli BL21 0.72 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.29 ECD_01718 exonuclease III — —
Escherichia coli ECOR38 0.72 HEPCGN_05910 nth endonuclease III 0.29 HEPCGN_05265 xthA exodeoxyribonuclease III low > 87
Escherichia coli ECRC62 0.72 BNILDI_16835 nth endonuclease III 0.29 BNILDI_16200 xthA exodeoxyribonuclease III low > 75
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS24560 endonuclease III 0.64 QEN71_RS05680 exodeoxyribonuclease III low > 153
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.27 Psyr_2476 Exodeoxyribonuclease III low > 86
Escherichia coli ECOR27 0.72 NOLOHH_18045 nth endonuclease III 0.29 NOLOHH_17415 xthA exodeoxyribonuclease III — —
Erwinia tracheiphila SCR3 0.71 LU632_RS11305 nth endonuclease III 0.28 LU632_RS12950 xthA exodeoxyribonuclease III low > 74
Enterobacter sp. TBS_079 0.71 MPMX20_02005 Endonuclease III 0.30 MPMX20_01864 Exodeoxyribonuclease III low > 85
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.29 EX28DRAFT_1753 exodeoxyribonuclease III low > 76
Escherichia fergusonii Becca 0.71 EFB2_02359 Endonuclease III 0.29 EFB2_02244 Exodeoxyribonuclease III low > 86
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_18345 endonuclease III 0.35 AO356_01850 exodeoxyribonuclease III low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Pseudomonas sp. RS175 0.71 PFR28_03349 Endonuclease III 0.35 PFR28_01207 Exodeoxyribonuclease III low > 88
Escherichia coli ECRC100 0.71 OKFHMN_27525 nth endonuclease III 0.29 OKFHMN_26900 xthA exodeoxyribonuclease III low > 80
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.29 B158DRAFT_1291 exodeoxyribonuclease III low > 40
Escherichia coli ECRC98 0.71 JDDGAC_02115 nth endonuclease III 0.29 JDDGAC_01475 xthA exodeoxyribonuclease III low > 86
Escherichia coli ECRC102 0.71 NIAGMN_00540 nth endonuclease III 0.29 NIAGMN_01165 xthA exodeoxyribonuclease III — —
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_05145 endonuclease III 0.31 CSW01_09315 exodeoxyribonuclease III low > 62
Escherichia coli ECRC99 0.71 KEDOAH_00580 nth endonuclease III 0.29 KEDOAH_01210 xthA exodeoxyribonuclease III — —
Pantoea sp. MT58 0.71 IAI47_10475 endonuclease III 0.28 IAI47_08990 exodeoxyribonuclease III low > 76
Serratia liquefaciens MT49 0.71 IAI46_11455 endonuclease III 0.29 IAI46_14290 exodeoxyribonuclease III low > 86
Escherichia coli ECRC101 0.71 MCAODC_17885 nth endonuclease III 0.29 MCAODC_18510 xthA exodeoxyribonuclease III low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3641 Endonuclease III (EC 4.2.99.18) 0.29 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) low > 78
Dickeya dianthicola ME23 0.71 DZA65_RS11025 endonuclease III 0.29 DZA65_RS10795 exodeoxyribonuclease III low > 75
Pseudomonas putida KT2440 0.71 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.34 PP_2707 putative Exodeoxyribonuclease III low > 96
Pseudomonas simiae WCS417 0.71 PS417_05655 endonuclease III 0.28 PS417_16980 exonuclease III low > 88
Pseudomonas fluorescens SBW25 0.71 PFLU_RS05740 endonuclease III 0.29 PFLU_RS18930 exodeoxyribonuclease III low > 109
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.64 Dsui_0044 exodeoxyribonuclease III low > 51
Klebsiella michiganensis M5al 0.71 BWI76_RS16385 endonuclease III 0.29 BWI76_RS11665 exodeoxyribonuclease III — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS05740 endonuclease III 0.29 PFLU_RS18930 exodeoxyribonuclease III low > 109
Pseudomonas fluorescens GW456-L13 0.70 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.34 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Dickeya dadantii 3937 0.70 DDA3937_RS10545 endonuclease III 0.29 DDA3937_RS10310 exodeoxyribonuclease III low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS10545 endonuclease III 0.28 HGI48_RS10320 exodeoxyribonuclease III low > 71
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.53 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) low > 74
Shewanella loihica PV-4 0.69 Shew_2072 endonuclease III (RefSeq) 0.31 Shew_2262 exonuclease III (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS01850 endonuclease III 0.52 LRK54_RS08625 exodeoxyribonuclease III 0.27 19
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_04675 nth endonuclease III 0.55 OKGIIK_15390 xth exodeoxyribonuclease III low > 52
Rhodanobacter denitrificans MT42 0.69 LRK55_RS01640 endonuclease III 0.52 LRK55_RS08390 exodeoxyribonuclease III low > 63
Variovorax sp. SCN45 0.68 GFF418 Endonuclease III (EC 4.2.99.18) 0.61 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) low > 127
Variovorax sp. OAS795 0.68 ABID97_RS17315 endonuclease III 0.61 ABID97_RS09955 exodeoxyribonuclease III 0.52 2
Shewanella amazonensis SB2B 0.68 Sama_1836 endonuclease III (RefSeq) 0.26 Sama_2139 exodeoxyribonuclease III (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO2514 nth endonuclease III (NCBI ptt file) 0.28 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.59 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) low > 90
Shewanella sp. ANA-3 0.67 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.28 Shewana3_1503 exonuclease III (RefSeq) 0.35 5
Lysobacter sp. OAE881 0.66 ABIE51_RS07560 endonuclease III 0.55 ABIE51_RS01755 exodeoxyribonuclease III low > 62
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.60 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Castellaniella sp019104865 MT123 0.61 ABCV34_RS08465 endonuclease III 0.62 ABCV34_RS03115 exodeoxyribonuclease III low > 48
Azospirillum brasilense Sp245 0.60 AZOBR_RS01565 endonuclease III 0.41 AZOBR_RS15540 exodeoxyribonuclease III 0.78 1
Azospirillum sp. SherDot2 0.59 MPMX19_02500 Endonuclease III 0.42 MPMX19_04331 Exodeoxyribonuclease 0.32 41
Magnetospirillum magneticum AMB-1 0.59 AMB_RS21105 endonuclease III 0.41 AMB_RS12755 exodeoxyribonuclease III low > 64
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.32 Ga0059261_3499 exodeoxyribonuclease III low > 68
Bosea sp. OAE506 0.57 ABIE41_RS03410 endonuclease III 0.38 ABIE41_RS15705 exodeoxyribonuclease III low > 77
Dinoroseobacter shibae DFL-12 0.56 Dshi_3023 endonuclease III (RefSeq) 0.36 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.55 PGA1_c29040 endonuclease III 0.35 PGA1_c11070 exodeoxyribonuclease III low > 62
Rhodospirillum rubrum S1H 0.53 Rru_A0153 Endonuclease III/Nth (NCBI) 0.36 Rru_A1784 exodeoxyribonuclease III xth (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03847 endonuclease III 0.41 CCNA_02090 exodeoxyribonuclease III — —
Caulobacter crescentus NA1000 0.51 CCNA_03847 endonuclease III 0.41 CCNA_02090 exodeoxyribonuclease III low > 66
Mucilaginibacter yixingensis YX-36 DSM 26809 0.41 ABZR88_RS16725 endonuclease III 0.35 ABZR88_RS19760 exodeoxyribonuclease III low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS00605 endonuclease III 0.34 CA265_RS16670 exodeoxyribonuclease III low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.48 Synpcc7942_2607 xthA Exodeoxyribonuclease III low > 38
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.25 MIT1002_01652 Exodeoxyribonuclease III low > 70
Mycobacterium tuberculosis H37Rv 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.36 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) low > 58

Not shown: 11 genomes with orthologs for HSERO_RS08070 only; 5 genomes with orthologs for HSERO_RS15630 only