Conservation of cofitness between HSERO_RS17110 and HSERO_RS13965 in Herbaspirillum seropedicae SmR1

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS17110 ribonuclease H 1.0 HSERO_RS13965 single-stranded DNA exonuclease 0.37 17
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS14220 ribonuclease H 0.61 BPHYT_RS12730 single-stranded DNA exonuclease — —
Paraburkholderia graminis OAS925 0.79 ABIE53_003009 ribonuclease HI 0.61 ABIE53_002771 single-stranded-DNA-specific exonuclease — —
Paraburkholderia bryophila 376MFSha3.1 0.79 H281DRAFT_04397 RNase HI 0.63 H281DRAFT_00488 exonuclease RecJ — —
Paraburkholderia sabiae LMG 24235 0.79 QEN71_RS04750 ribonuclease HI 0.63 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ — —
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS13580 ribonuclease H 0.71 RR42_RS06090 single-stranded DNA exonuclease — —
Ralstonia solanacearum UW163 0.74 UW163_RS15535 ribonuclease HI 0.65 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS02225 ribonuclease HI 0.65 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum GMI1000 0.74 RS_RS07595 ribonuclease H 0.65 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas sp. S08-1 0.74 OH686_03570 Ribonuclease HI 0.47 OH686_06955 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum PSI07 0.74 RPSI07_RS15220 ribonuclease HI 0.65 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS14175 ribonuclease HI 0.64 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_3338 Ribonuclease HI (EC 3.1.26.4) 0.47 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Acidovorax sp. GW101-3H11 0.72 Ac3H11_480 Ribonuclease HI (EC 3.1.26.4) 0.56 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Pseudomonas sp. RS175 0.72 PFR28_01554 Ribonuclease HI 0.47 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ — —
Caulobacter crescentus NA1000 Δfur 0.72 CCNA_03476 ribonuclease HI 0.20 CCNA_01450 single-stranded-DNA-specific exonuclease recJ — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_589 Ribonuclease HI (EC 3.1.26.4) 0.48 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Pseudomonas putida KT2440 0.72 PP_4142 ribonuclease H 0.47 PP_1477 ssDNA-specific exonuclease RecJ — —
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_24490 ribonuclease H 0.48 AO356_06345 single-stranded-DNA-specific exonuclease RecJ — —
Caulobacter crescentus NA1000 0.72 CCNA_03476 ribonuclease HI 0.20 CCNA_01450 single-stranded-DNA-specific exonuclease recJ — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1763 RNase HI 0.46 Psyr_1298 exonuclease RecJ — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1763 RNase HI 0.46 Psyr_1298 exonuclease RecJ — —
Pseudomonas simiae WCS417 0.72 PS417_12230 ribonuclease H 0.48 PS417_22855 ssDNA exonuclease RecJ — —
Brevundimonas sp. GW460-12-10-14-LB2 0.71 A4249_RS05650 ribonuclease HI 0.19 A4249_RS05895 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_23500 ribonuclease H 0.46 AO353_04320 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_4598 Ribonuclease HI (EC 3.1.26.4) 0.48 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS12920 ribonuclease HI 0.47 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS12920 ribonuclease HI 0.47 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ — —
Variovorax sp. SCN45 0.69 GFF1119 Ribonuclease HI (EC 3.1.26.4) 0.56 GFF6700 Single-stranded-DNA-specific exonuclease RecJ 0.54 62
Dechlorosoma suillum PS 0.69 Dsui_2482 ribonuclease HI 0.57 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas stutzeri RCH2 0.69 Psest_2073 Ribonuclease HI 0.44 Psest_1544 single-stranded-DNA-specific exonuclease RecJ — —
Variovorax sp. OAS795 0.69 ABID97_RS14740 ribonuclease HI 0.55 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10475 ribonuclease HI 0.57 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1063 Ribonuclease HI 0.42 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ — —
Azospirillum sp. SherDot2 0.68 MPMX19_01081 Ribonuclease HI 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ — —
Rhizobium sp. OAE497 0.67 ABIE40_RS04115 ribonuclease HI 0.23 ABIE40_RS08655 single-stranded-DNA-specific exonuclease RecJ — —
Magnetospirillum magneticum AMB-1 0.67 AMB_RS03905 ribonuclease H 0.21 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ — —
Sinorhizobium meliloti 1021 0.67 SMc00018 ribonuclease H 0.19 SMc00292 single-stranded-DNA-specific exonuclease — —
Agrobacterium fabrum C58 0.66 Atu0776 ribonuclease H 0.21 Atu1586 single-stranded-DNA-specific exonuclease — —
Marinobacter adhaerens HP15 0.66 HP15_1803 ribonuclease Hi chain A-like protein 0.43 HP15_766 bacterial RecJ exonuclease — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4259 Ribonuclease HI (EC 3.1.26.4) 0.54 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Rhodopseudomonas palustris CGA009 0.66 TX73_022115 ribonuclease HI 0.20 TX73_012960 single-stranded-DNA-specific exonuclease RecJ — —
Rhodospirillum rubrum S1H 0.66 Rru_A3054 Ribonuclease H (NCBI) 0.21 Rru_A2408 RecJ exonuclease (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.65 Ga0059261_3252 Ribonuclease HI 0.22 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ — —
Bosea sp. OAE506 0.64 ABIE41_RS23050 ribonuclease HI 0.21 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS07275 ribonuclease HI 0.42 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECOR38 0.63 HEPCGN_07910 rnhA ribonuclease HI 0.42 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03447 Ribonuclease HI 0.42 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia coli ECRC62 0.63 BNILDI_09355 rnhA ribonuclease HI 0.42 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ low > 75
Escherichia coli BW25113 0.63 b0214 rnhA ribonuclease H (NCBI) 0.43 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) — —
Escherichia coli BL21 0.63 ECD_00207 ribonuclease HI 0.42 ECD_02724 ssDNA exonuclease, 5 — —
Escherichia coli ECRC98 0.63 JDDGAC_13565 rnhA ribonuclease HI 0.43 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ low > 86
Escherichia coli ECOR27 0.63 NOLOHH_02315 rnhA ribonuclease HI 0.42 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 75
Escherichia coli ECRC102 0.63 NIAGMN_07820 rnhA ribonuclease HI 0.43 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC100 0.63 OKFHMN_09970 rnhA ribonuclease HI 0.43 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ low > 80
Escherichia coli Nissle 1917 0.63 ECOLIN_RS01170 ribonuclease HI 0.42 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC99 0.63 KEDOAH_18185 rnhA ribonuclease HI 0.43 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 0.63 MCAODC_00485 rnhA ribonuclease HI 0.43 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ low > 87
Escherichia fergusonii Becca 0.63 EFB2_03829 Ribonuclease HI 0.42 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Erwinia tracheiphila SCR3 0.63 LU632_RS01090 rnhA ribonuclease HI 0.41 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.4033.1 Ribonuclease HI (EC 3.1.26.4) 0.41 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Klebsiella michiganensis M5al 0.62 BWI76_RS05450 ribonuclease HI 0.40 BWI76_RS23805 ssDNA exonuclease RecJ low > 92
Shewanella amazonensis SB2B 0.62 Sama_1881 rnhA ribonuclease H (RefSeq) 0.43 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_07990 rnhA ribonuclease HI 0.40 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS16500 ribonuclease HI 0.22 LRK55_RS18310 DHHA1 domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS16775 ribonuclease HI 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF4046 Ribonuclease HI (EC 3.1.26.4) 0.43 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Shewanella loihica PV-4 0.61 Shew_2112 ribonuclease H (RefSeq) 0.44 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_11385 ribonuclease HI 0.43 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ — —
Pantoea sp. MT58 0.61 IAI47_15330 ribonuclease HI 0.43 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ — —
Dinoroseobacter shibae DFL-12 0.61 Dshi_0182 ribonuclease H (RefSeq) 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) — —
Serratia liquefaciens MT49 0.61 IAI46_04145 ribonuclease HI 0.44 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ — —
Pectobacterium carotovorum WPP14 0.60 HER17_RS05465 ribonuclease HI 0.43 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ — —
Rahnella sp. WP5 0.60 EX31_RS21190 ribonuclease HI 0.44 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2680 Ribonuclease HI 0.41 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ — —
Phaeobacter inhibens DSM 17395 0.60 PGA1_c00930 ribonuclease H 0.22 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01690 Ribonuclease HI 0.42 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Shewanella sp. ANA-3 0.59 Shewana3_2366 rnhA ribonuclease H (RefSeq) 0.44 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO2560 rnhA ribonuclease HI (NCBI ptt file) 0.44 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) — —
Enterobacter sp. TBS_079 0.59 MPMX20_00899 Ribonuclease HI 0.41 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ low > 85
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU0689 rnhA ribonuclease HI (TIGR) 0.20 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_2669 rnhA ribonuclease H (RefSeq) 0.22 DvMF_1134 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 51
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_00830 ribonuclease HI 0.24 CA264_17545 single-stranded-DNA-specific exonuclease RecJ — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1813 Ribonuclease HI 0.23 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS05225 ribonuclease HI 0.22 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS09645 ribonuclease HI 0.22 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ — —

Not shown: 2 genomes with orthologs for HSERO_RS17110 only; 10 genomes with orthologs for HSERO_RS13965 only